AMCG00000777 (coq10b,LOC107690612)


Basic Information

Item Value
gene id AMCG00000777
gene name coq10b,LOC107690612
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3133876 ~ 3140489 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000777
ATGGCGAGGGGCTGCGGCAACCTGAGGAGGGCTGTAGCGGAGTGTCTCAACCGGCTGCCGGTCACAGGAGAGGGAGCCCCCCGGAGTGGCGTCAGGTCTGTGGGTGTTGTTGAATATATCGCgAGCGTTCCCAGCCAGCGGCGCCACTTGGAGCCCATCCAGCAGCCCAGCACACTGCCGCTCTGTACCTACCCAGCGTGGCACGCAAGGACACAATGTGCCGACACTGTGTGCACGCTCTCCGGGTACCTGTCCTCGTGTGGCATCCTGATGACCCAGGGGGTGCCCCTCCTGGCGCTGCCGCCCAGCCGCCCGGTCCTGCTGTGCAAACGCAGCTTCCTGAACCTGGCAGCGCCCTTCATCAACAAGAGGAAGGAGTACTCGGAGCGACGCATCATCGGGTACTCCATGCAGGAGATGTATGACGTGGTGGCCGGCGTGGAGCAGTACCTGCACTTTCGCTCCGAGGTGATCTCCCGCCGGACAGGCTTCTGCAAGGCGCACCTGGAGGTGGGCTTCCCCCCCGTGGTGGAGCGCTACACCTCCCTCGTCACCACGGTGCGCCCCCACCTGGTCAAGGCTAACTGCACGGATGGGAAGCTCTTCAATCACCTGGAGACGGTGTGGCGCTTCAGTCCCGGCATCCCAGGCTACCCTCGCACCTGCACCCTGGACTTTGCGATCTCCTTCGAGTTCCGCTCGCTGCTGCACTCCCAGCTGGCCACCGTGTTCTTCGATGAGGTCGTCAAGCAGATGGTGTCTGCGTTTGAGCGGCGGGCGGGCAAGCTGTACGGGCCGGAGACGTGCATCCCCCGAGAGCTGATGTTCCATGAGATCCACCACACATAGCCCCCGAGGGTGGGGTGGGTTGTGGTGGTAATGGGTGCTGCGCCTGGGCCCAGACCACCACAATTCCCTTACCCAGCACCCCACTGCGGCTGCATGCCTCTTTAGGCCTTGCAGTCTGGTCCCCTGGGCGCCCTGTGTCCAAGTGCCTCAGATTTTTGCACACTTCTaatctccccaccccccaatctTCTCAACAAGGCGTGTGACCTCGCTGGACGGACATCGGTGGGTCCAGACAGGTACTGGAACGGTCTTTGGTGTTGCTTACCACTCAGTGGATGGTCACAAGAGATGGGGACCCCAAACCCCAGTCTGCGGGTTTGATCTCACCAGAGCACCAGTGGACCCTAAAACCACGTGTCTACATGGACGACGGAAGGGGTTAGACAGTAGGTCCGCACCCATCGTCTGTAACAGGCTTGGGGTATGTTTGAGACCCAAGAAGGGATTTTTGATAGTGGCTCCGGTAGGTGTTTGAaactacaaattacaaattaattgtgtgtgtgtatccgaTGCTTCTCACCGATGTGTGTACAGTCTGTAAACCGAGTTCTTCtatcacgtgtgtgtgtgcgcgtgctcTATGCGTGGAGGCCGAGCTGAAGTGGCCGCATGTTTCCTCTGATCCGCAAACCCGCGGCTTCGGAAATCTGCGGTGACTGAATCGCACAACGCAGCTTTTGAAACCGCGGACGGACCGGATTCGGACATCCTGAGAGGGAAGGGAGTAGGGGATGAGAATTGTTGCATAAGAAGTGTGTAGTATTATTGTATTCAATGTGGTTTTATACTTCTGCCTGAGTTTTATAAGCCTTGTGTGCACGCGCTGTCTCCGTACACTTCAGGG
>TU158101
NGTGGTGGCCGGCGTGGAGCAGTACCTGCACTTTGTGCCGTGGTGTAAGCGCTCCGAGGTGATCTCCCGCCGGACAGGCTTCTGCAAGGCGCACCTGGAGGTGGGCTTCCCCCCCGTGGTGGAGCGCTACACCTCCCTCGTCACCACGGTGCGCCCCCACCTGGTCAAGGCTAACTGCACGGATGGGAAGCTCTTCAATCACCTGGAGACGGTGTGGCGCTTCAGTCCCGGCATCCCAGGCTACCCTCGCACCTGCACCCTGGACTTTGCGATCTCCTTCGAGTTCCGCTCGCTGCTGCACTCCCAGCTGGCCACCGTGTTCTTCGATGAGGTCGTCAAGCAGATGGTGTCTGCGTTTGAGCGGCGGGCGGGCAAGCTGTACGGGCCGGAGACGTGCATCCCCCGAGAGCTGATGTTCCATGAGATCCACCACACATAGCCCCCGAGGGTGGGGTGGGTTGTGGTGGTAATGGGTGCTGCGCCTGGGCCCAGACCACCACAATTCCCTTACCCAGCACCCCACTGCGGCTGCATGCCTCTTTAGGCCTTGCAGTCTGGTCCCCTGGGCGCCCTGTGTCCAAGTGCCTCAGATTTTTGCACACTTCTaatctccccaccccccaatctTCTCAACAAGGCGTGTGACCTCGCTGGACGGACATCGGTGGGTCCAGACAGGTACTGGAACGGTCTTTGGTGTTGCTTACCACTCAGTGGATGGTCACAAGAGATGGGGACCCCAAACCCCAGTCTGCGGGTTTGATCTCACCAGAGCACCAGTGGACCCTAAAACCACGTGTCTACATGGACGACGGAAGGGGTTAGACAGTAGGTCCGCACCCATCGTCTGTAACAGGCTTGGGGTATGTTTGAGACCCAAGAAGGGATTTTTGATAGTGGCTCCGGTAGGTGTTTGAaactacaaattacaaattaattgtgtgtgtgtatccgaTGCTTCTCACCGATGTGTGTACAGTCTGTAAACCGAGTTCTTCtatcacgtgtgtgtgtgcgcgtgctcTATGCGTGGAGGCCGAGCTGAAGTGGCCGCATGTTTCCTCTGATCCGCAAACCCGCGGCTTCGGAAATCTGCGGTGACTGAATCGCACAACGCAGCTTTTGAAACCGCGGACGGACCGGATTCGGACATCCTGAGAGGGAAGGGAGTAGGGGATGAGAATTGTTGCATAAGAAGTGTGTAGTATTATTGTATTCAATGTGGTTTTATACTTCTGCCTGAGTTTTATAAGCCTTGTGTGCACGCGCTGTCTCCGTACACTTCAGGGCACAAGACTCGTGTCCATGTGTTGTGGATTTCTTTGGAAAGTGAAGAAGTTGCTGTGGAAGACTGATACCCAAACTGTAAACCCCTcacttgttgtttttccctttttatttttttaaatatagtgtatattgttcataatttatttagtttattaaaaacacatgtacataatTATATAGCACAGATTAAGCTGGTTAAACACTTTCtttattaacttttcttttGGTGTAATTgaggtttttaatgtttataagTCATGGATGGAGACATGCATCCTGATTGCACGgtttaataaactatttttcTATTAAAGTA

Function

symbol description
coq10b Predicted to enable ubiquinone binding activity. Predicted to be involved in cellular respiration and ubiquinone biosynthetic process. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Orthologous to human COQ10B (coenzyme Q10B).

GO: NA

KEGG:

id description
K18588 COQ10; coenzyme Q-binding protein COQ10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000777 True 1699 mRNA 0.59 7 3134193 3140489
TU158101 False 1606 lncRNA 0.52 3 3133876 3135913

Neighbor

gene id symbol gene type direction distance location
AMCG00000778 hspe1,LOC107690609 coding downstream 10076 3122208 ~ 3123800 (-)
AMCG00000776 NA coding downstream 30645 3083455 ~ 3103231 (-)
AMCG00000775 NA coding downstream 55333 3065810 ~ 3078543 (-)
AMCG00000770 NA coding downstream 77997 3052881 ~ 3055879 (-)
AMCG00000765 NA coding downstream 596008 2520235 ~ 2537868 (-)
AMCG00000785 LOC106586374 coding upstream 40990 3181479 ~ 3205611 (-)
AMCG00000784 NA coding upstream 92932 3233421 ~ 3237636 (-)
AMCG00000788 NA coding upstream 135769 3276258 ~ 3314125 (-)
AMCG00000794 NA coding upstream 370630 3511119 ~ 3517210 (-)
AMCG00000795 NA coding upstream 404800 3545289 ~ 3568649 (-)
G126037 NA non-coding downstream 575627 2557991 ~ 2558249 (-)
G126005 NA non-coding downstream 613656 2427941 ~ 2520220 (-)
G126020 NA non-coding downstream 671388 2460715 ~ 2462488 (-)
G125875 NA non-coding downstream 1306134 1822252 ~ 1827742 (-)
G125845 NA non-coding downstream 1556530 1575361 ~ 1577346 (-)
G126275 NA non-coding upstream 410351 3550840 ~ 3552977 (-)
G126296 NA non-coding upstream 533792 3674281 ~ 3676927 (-)
G126369 NA non-coding upstream 1104240 4244729 ~ 4245041 (-)
G126428 NA non-coding upstream 1496878 4637367 ~ 4637640 (-)
G126429 NA non-coding upstream 1497469 4637958 ~ 4638285 (-)
AMCG00000771 nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546 other downstream 83860 3044167 ~ 3050016 (-)
G126089 NA other downstream 91912 3036931 ~ 3041964 (-)
G126017 NA other downstream 675993 2451868 ~ 2457883 (-)
AMCG00000741 gtf3c3,LOC104966512 other downstream 1302566 1829544 ~ 1831310 (-)
AMCG00000731 NA other downstream 1362851 1762029 ~ 1771025 (-)
AMCG00000804 NA other upstream 412558 3553047 ~ 3656561 (-)
G126427 NA other upstream 1495607 4636096 ~ 4636516 (-)
AMCG00000838 cacnb4,LOC108434427 other upstream 1816649 4957138 ~ 4982651 (-)
G126700 NA other upstream 2432216 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 3549079 6689568 ~ 6733817 (-)

Expression


Co-expression Network