AMCG00000778 (hspe1,LOC107690609)


Basic Information

Item Value
gene id AMCG00000778
gene name hspe1,LOC107690609
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3122208 ~ 3123800 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000778
ATGGGGGAGGGGGCTCTGGCTGCCTCGGCGTTCAGAAAGTTCCTCCCGATGTTCGACCGTGTCCTGGTGGAGAGGTTCGCCGCAGAGACGGTGACCAAGGGTGGGATCATGCTGCCGGAGAAATCCCAGGGCAAAGTGCTGCAGGCCATGGTGGTGGCGGTGGGGCCTGGCAATGTGAACAAGGATGGCAATCTGCAGCCGGTCTGTGTCAAGGTGGGAGAGAAGGTCCTGCTGCCCGAATACGGAGGAACGAAAGTGTCGCTGGATGACAAGGAGTACTTCCTGTTCCGCGATGGGGATATCCTGGGAAAATACGTGGAGTGAAGCCCTCGCTCGTGACCAGCTGTCCCATTCCACCATCAagagcgaggaggaggaggagctctgtgttgtatttgtattgcgttctgttttttctatttcattcaaatgtaaatactaATTTTCTtttgtcataataataaaattgactATTGAACCCTGGGATAGGGTGTGATTCTGAGTCTTGTCAGGTGTGTTATT

Function

symbol description
hspe1 Predicted to enable chaperone binding activity; metal ion binding activity; and unfolded protein binding activity. Predicted to be involved in chaperone cofactor-dependent protein refolding. Predicted to act upstream of or within protein folding. Predicted to be active in mitochondrial matrix. Is expressed in several structures, including alar plate midbrain region; digestive system; midbrain; pectoral fin; and segmental plate. Orthologous to human HSPE1 (heat shock protein family E (Hsp10) member 1).

NR:

description
PREDICTED: 10 kDa heat shock protein, mitochondrial isoform X1

GO: NA

KEGG:

id description
K04078 groES, HSPE1; chaperonin GroES

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000778 True 522 mRNA 0.52 4 3122208 3123800

Neighbor

gene id symbol gene type direction distance location
AMCG00000776 NA coding downstream 18977 3083455 ~ 3103231 (-)
AMCG00000775 NA coding downstream 43665 3065810 ~ 3078543 (-)
AMCG00000770 NA coding downstream 66329 3052881 ~ 3055879 (-)
AMCG00000765 NA coding downstream 584340 2520235 ~ 2537868 (-)
AMCG00000763 NA coding downstream 722853 2394089 ~ 2399355 (-)
AMCG00000785 LOC106586374 coding upstream 57679 3181479 ~ 3205611 (-)
AMCG00000784 NA coding upstream 109621 3233421 ~ 3237636 (-)
AMCG00000788 NA coding upstream 152458 3276258 ~ 3314125 (-)
AMCG00000794 NA coding upstream 387319 3511119 ~ 3517210 (-)
AMCG00000795 NA coding upstream 421489 3545289 ~ 3568649 (-)
G126037 NA non-coding downstream 563959 2557991 ~ 2558249 (-)
G126005 NA non-coding downstream 601988 2427941 ~ 2520220 (-)
G126020 NA non-coding downstream 659720 2460715 ~ 2462488 (-)
G125875 NA non-coding downstream 1294466 1822252 ~ 1827742 (-)
G125845 NA non-coding downstream 1544862 1575361 ~ 1577346 (-)
G126275 NA non-coding upstream 427040 3550840 ~ 3552977 (-)
G126296 NA non-coding upstream 550481 3674281 ~ 3676927 (-)
G126369 NA non-coding upstream 1120929 4244729 ~ 4245041 (-)
G126428 NA non-coding upstream 1513567 4637367 ~ 4637640 (-)
G126429 NA non-coding upstream 1514158 4637958 ~ 4638285 (-)
AMCG00000771 nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546 other downstream 72192 3044167 ~ 3050016 (-)
G126089 NA other downstream 80244 3036931 ~ 3041964 (-)
G126017 NA other downstream 664325 2451868 ~ 2457883 (-)
AMCG00000741 gtf3c3,LOC104966512 other downstream 1290898 1829544 ~ 1831310 (-)
AMCG00000731 NA other downstream 1351183 1762029 ~ 1771025 (-)
G126096 NA other upstream 7914 3131714 ~ 3149252 (-)
AMCG00000777 coq10b,LOC107690612 other upstream 10076 3133876 ~ 3140489 (-)
AMCG00000804 NA other upstream 429247 3553047 ~ 3656561 (-)
G126427 NA other upstream 1512296 4636096 ~ 4636516 (-)
AMCG00000838 cacnb4,LOC108434427 other upstream 1833338 4957138 ~ 4982651 (-)

Expression


Co-expression Network