AMCG00000793


Basic Information

Item Value
gene id AMCG00000793
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3533139 ~ 3547238 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000793
ATGCAATCCATTGTGGATGAGGACTCCCCTCCATGGTCTGCCAGCTGGAGAGAACACCTTCACATTGGCTGCTGCATAGAAGACATCTACTGCCAGAGCCTCATCAAACCAGGAGCCTCAGTTATGATCTTGCATGCTGATGTGTTGGACAGAGGCGGGCAGAGATGGACACAAAGGCTGTTCCCTGTGGATGGTGAACAGCATACAGCAACAGGCAAACCAGCTCCAGTGATAGGGGCTGTGGCACTAAAGTCTCGAGGAGTTGCCTGGATTGTTGATGTGGAAGACGAACTGATCCTGGGCCTCGATTTTCTGCCTGCTACTCAATTCTGCCTGGACCTGGGCCAAGACAGACTGATAATAAGGGCCCCAAGGACAGCAGTTTCACATCAGGCAATGGCAGAGCTGTGTGAGCGGGGCAGCCGCTGCCTGAGTGAGGAACAAGCGGGAGCAGTGCGCCACCTAGTGGAGGaattttgtgatgtttttccaCAAAGTGTAGATGACAGTGGGCGCAAAGGCCCTCTTGAGGTTGCACACTGCTCTCCTGGAGTCTGTGTCGTGAAACCTGGGGCCGACAGCGTGAATGACATGTTTACAGGGGAGGCGGCCAGAATCTGTGATGATGGCCTCGCCTGGCTTCAGGCGTCCTTTGGCATTGACATACCGATCACACTGGTCCTGCAGCAGTTGACCGGCTGCTCTGAGGAGAGCTGCTGCCAGACCCCCAATATGCTTCAGATCCTCATTGGACGCGTTGACCACAACATCAACGGGACTGATGTCATCGTTAATACTATATCTGAGGACTTAGACCTCAGTAAAGGAGCCGTCTCCAACGCCATTTTACAGGCAGCAGGTTCATCGCTACAAACTCTGGTCCGGCAAGAGGCCGCAACGTCCCCCTTTGACCAAGGAGACGTGGTGATAACTAGAGGATGCGGTCTGAAGTGCAGCATGGTGTTTCATGCTATCTGCCCCTTTTGGGACCAAGGAAAAGGCAAATCAGAAGATttgTTGAAAGGCATCGTCAAGGAGTGCCTGAAACAAGCTGAGCAGCGGAAACAGAGCTCCGTGTCCTTCCCGGCCATCGGCACCGGAAACCTGGGATTCCCAAAGCCCCTGGTGGCCTCCTTAATGCTGGAGCAAGTCCTGAGGTTCAGCCAAAAGTGGGACCCCAAACGTCTGCAGGAAGTGGTTTTTATAGTACATCCCAGTGATGTGCAGTCTGTGAGGGTAAGAAGTGATCCTTTGAACAATCCTAGgatttCACTTCAGAGTTCAGAAAGCAGCCCCACGGACGCCAGACACCAGTCAAGCACCATGCTGGCCCCACACAACCGGGAACTGATCTTGACACCTACTCTGGGTGTGTACTGCATGACGATTGGAGGGTTGACCCTTGAGGTGTTAACAGGAGACATCACCAAGGAGACTACTGATGTGATCGTCAATTCATCCAACAACACGTTCACTCTTAAATCAGGACAGGGGGGTACAAGTCCCTCTCGCGTGGCAGATGCGATGATAAGCGCAGTGGTGGATTTCGTGAGTAAGAGGAAGGCGGGGGAGTGTCTGCGGAGCGTGAGGATAGTGATCTTCCAGGCCGTCATGTTATCTGAGTTCCATAAGAGCCTGCAAGCCAGAGAAGGCACTGCCCTGCCAGAGCAGAAGTCTGTGTTCTCGAGAGTCAAGAGTGCTTTATATTCCCTTGTAGGGAGCAgttcagaaacaaaagaaaatgaagaatttGTCATGATGGGTGAAGAGTTCGAGCCGGCCGTGTTTCAGATCTGTGCTGAAAGGAGCCAGGACATGGCCAGGGCCAAAGACTGGATCAAAGAGCTTATTATCAAAGAACAGACTGAAGAAACCATCAATGACAAGTGGATCGCTCTTCTCTCTCGGGAAGATTTGCACAAGATTCAGGACCTTCAGAAGACGCTGCAGGTCAGCATTAAGGTGGAGAGCCGGGGCCCAGAGTCCTCTATTCAGCTGGCAGGGCTGACGCGAGACGTGCTGAAGGCCATGACTGAGATCCAGGTGATGATCAGGAAGGTTGAGAATAAAGAGACCCAGAAACGCGAGGCGGCCGTGGTTAGCACCTTGGTGGAATGGCAGTACGAGGACAGCGGCAGCTTTGTGCCTTTCAACAGCCTCGCAAACCTCACTCTGGAACAggcttttgaaaacaaagaagCTCGGGTCAAAATCAAGATTGATAGAAAGAATTATACAGTTTCGTTGAGCAGGAGTGTGGCAGTAGATGACTTCAAcaaaaagataaagataaaaagAGTCGTATTGACAGATGAATCTCTCGGAAACCTTCCAACCCACTGGAGTGATATGAAAGGGTCACAGACAGTACAGGTGCAGATCCAGACAGGCACTCCTGAGTATCAGGATGTGGAGCAGGAATTCAGGAAGACTTGTCCAAACAACATACTGAAGATTGAAAGAATCCAGAACGGCTCATTGTGGCACAGTTACCAGATCAGAAAGAAGCACCTGGACGAAAAGAACGGCCACACTAACAACGAGAGACGGCTCTTCCATGGCACCTGCCCAACGACACTGAGTCAGATCAACACGCACGGCTTCAACCGCAGCTACGCAGGAAGAAATGCTGCTGTCATCGGGAATGGAACCTACTTTGCAGTTGATGCGAATTACTCTGCAAGCAACACTTACTCCAAGCCCGATGCCCAAGGACTGAAATACGTGTACTACTCCAGGGTCCTCGTCGGAGAGTTTACCACCGGAAGAGCTGGCCTGATCGTGCCCCCTGCCAAGACGTCTGCGGATCCTGCAGATTTATATGACAGTGTTGTAGACAATCCGGCAAATCCGAgggtgtttgttattttcaatgacGTGCAGGCTTACCCAGAGTACCTGATCACCTTCCGCTGA

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000793 True 2916 mRNA 0.51 12 3533139 3547238

Neighbor

gene id symbol gene type direction distance location
AMCG00000791 NA coding upstream 10786 3517722 ~ 3522353 (+)
AMCG00000792 NA coding upstream 28174 3490741 ~ 3504965 (+)
AMCG00000789 LOC102295795,LOC102199121,LOC101478098,LOC102798094 coding upstream 50597 3437283 ~ 3482542 (+)
AMCG00000786 NA coding upstream 147240 3378438 ~ 3385899 (+)
AMCG00000787 NA coding upstream 159892 3314868 ~ 3373247 (+)
AMCG00000790 NA coding downstream 22175 3569413 ~ 3575908 (+)
AMCG00000798 NA coding downstream 35942 3583180 ~ 3592142 (+)
AMCG00000797 NA coding downstream 90932 3638170 ~ 3651877 (+)
AMCG00000799 NA coding downstream 109629 3656867 ~ 3660538 (+)
AMCG00000806 c1ql2,LOC104939125,LOC102789465,LOC100698439 coding downstream 139021 3686259 ~ 3698536 (+)
G126068 NA non-coding upstream 449552 3081746 ~ 3083587 (+)
G126054 NA non-coding upstream 464676 3010243 ~ 3068463 (+)
G126050 NA non-coding upstream 647955 2870916 ~ 2885184 (+)
G126044 NA non-coding upstream 766600 2766255 ~ 2766539 (+)
G126036 NA non-coding upstream 974882 2557992 ~ 2558257 (+)
G126215 NA non-coding downstream 8328 3555566 ~ 3558424 (+)
G126240 NA non-coding downstream 105435 3652673 ~ 3656581 (+)
G126248 NA non-coding downstream 123564 3670802 ~ 3673176 (+)
G126301 NA non-coding downstream 178682 3725920 ~ 3730056 (+)
G126368 NA non-coding downstream 697494 4244732 ~ 4245036 (+)
AMCG00000734 NA other upstream 1718982 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 1834566 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 1927108 1599696 ~ 1606031 (+)
G125561 NA other upstream 3129548 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 1914063 5461301 ~ 5465981 (+)
G127134 NA other downstream 5069961 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 6553045 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 8452426 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 8741712 12288950 ~ 12385042 (+)

Expression


Co-expression Network