AMCG00000797


Basic Information

Item Value
gene id AMCG00000797
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3638170 ~ 3651877 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000797
tataatttgaggaCACAACCTGTCCCggtatgtttttgtgtaaagCAGGATGAATGAAGATGTGTCCAGGAGACAAGCGCCTATTGCCGTGACTGACAGGACTTTGGCCGCAAAAATGAATTTCCACTGAAACTCAGTGTCTTTTACAAGCAGGTTAAACTGAGATTGTCAACTCCAGAGATACAGCCTCTTCAGTCAATGCGAGACGGGAGATGCTGCTGCTTGGATCTGCTAACTGGGATTATTTGATCTGATTTTATCTTGCttattaaaaatcaatgtattgatCAGATATAACATCAGGCTGCTGTCAGACACTGGGATTActtgtatagtattttaaacaacgttgtaataaacaatacactatAATATctgcatgtatttgtttcaaaacCAATCAGTGATAAGGATTTGTGTCTGTTCTCCACAAATGGGACTATTGTAATCTAAAATCACTGTGAAAATGCAGACATTGGTCTTGTTTGTATTACTGGAAGTTTGCTTACAGAGGGATGAGGTGCAATGCCATAAGCTTCTCCAGCTGCAGAAGAGGAATTCCTCTGAAGTGGGACTACACCAGGCAGAGTGTGAGGGGACGTGGGACGGTCTGAACTGCTGGCCGGCCTCTGCTGTTGGGAAGACTGTGGCCATTCCTTGTCCCCATTTCCTCGTTGTGATTACAGGGAAAGAAGGAGTGGTGTACAGGAACTGCACCAGAGATGGCTGGTCGCAGGCCTTCCCCCAGCACGAGATTGCCTGTGGATATGATTTAATACAGGAAGATCTTCATAATCATAACAACATTTCTGAAAATCCAAAGTACTTCCTGCATGTGAGAATCATGTACTCTGTGGGCTACGGCATATCTCTCGTGTCCCTGATCATAGCAATTGGCATTCTCAGTGTCTTCAGGAAGCTGCACTGCACGCGGAATTACATCCACATCCAGCTCTTCGTGTCCTTTGTTCTTCGAGCGCTGTCCATCTTTGTGAAAGACTTCGCTCTCTTCTCTGCCGAGGACATGTATAAGTGCCACGTCTACCCGGTGTGGTGTAAGATCGTGGTGGTGTTCTTTCATTACTGCATCATGGCCAATTACAGCTGGTTGATGGTTGAAGCTCTCCACCTCCACACCCTGCTggttttctccttcttctcggAGAGGAAATATTTCTGGGTGTATATCGTTTTTGGCTGGGGCTCaccaatgttatttattatagccTGGTCAATAGCAAAGAAATTACTTGAAGACATAGGgAGGCTTGCCAAATCCACCCTTCTGTTGATCCCTCTGTTTGGCGTCTACTACATCCTGTTTACGTTCTTTAATCACGATGTCAGGTCTTTACCTTGGTTATTCTTTGAACTCGCCCTGGCATCAATTCAGGTCCAGAGTGAGGTCCAGAGGAAGTGGAAGCGGTGGAGGCTGAAGCAGCGTCTCCATGGCCAAGCCCGGCCCCACCAGAACTCCATCAGCCACAGCGGGGGGGCGGTGACCCAGGAGTCCCTGCTGACACGGGACCAGAGGAGCCCCGGCCAATGGGAGTCCAGCCTGGTGTGACGACGCCGACCGCCGGCAGCTCTGGCACCTACAGACCGGGCAGGAGACCGTTGGAGAGGACTGTCCTGTTGATGGCATCACGGCAGTTGTGCAGCATCATGGCTGTCCCTTTCCTGCACTGGATGGATGTTAATCTAAGCaacaaaactatatttatcCAGATGCTAAACTGTGTATAAAGCTCTTTTTAATAAAGGGCAGCAGCAATGATGTTGGGGGGAAAAATGAATGGAGAAACTACTGCATGACATCATTGTGCATCCTCAACATGTTGTGAAGAACAGAAAATATGACGGCAGTGTGGCACAGCACAGGGCTTCATACCAAACCATTCCCACTGGATCGACGGGTAAATTTGAACATGGAATGATAAGAATTCCCAGAAGAAGATTCTCATAAactgtatttctatttttctttacttcatGAAAGTCCTTCAGGCTCTGGACACTGAACCAGTAGAAAGGGAGAAACTGTGAGCATCATTAGCagtcatgctttaaaaaaacaactggcGTCAACACTTTTTGATCTATTACCCGAGCACCTTGAGCTCTGTTTTGTATTCTTCAGAAGTACTGCAGGATTGTAGCTGGGCTGTGCAACTGGGATCACTTTGTCAAGAACCGGACTGCGGCTCTCGTTCCTCGTAACCAGATATCCAAGGAAGAAGTTAAATAAGTCCCAAGAGCTCATATAGAAAGaccgaaaaagaaaaaagaaaagcttatatattgcatatttgtttatttgttagaTTATTTTCCTTGTGAAATATGATCTATGATACTCATTGAGAGATATAAACCCAGGGTATTGATGTGTATCCTTAGCGTTTCAGGCTGCAAGGTTTCTACAGCAGAAGATTATATTCATATGTTTCTTTAGTATAAGTATATTTTAgttatgtttataaatatatatatatatatatatatatattatgtataaataatatatttattctttattttaaatggcaaataaaTCATGTCTCTCTTTAGACCTCAGAAGTGGTATTACTAGAATTAAGTTCTATAATTGTACAATATAGCAAATATTTGTAAGAGTTCGACaaattgctgttgttttttttattcaatgacgaatgtgaaattgtatttgttttattattttttaatcatgtttaaCATCACCCACTAAACCATGCCAGAGGtttctgtttattatataagatgatataaagtataatatttcTAATGAACTGATTTTACAGCTCTGgccatttttaatgttatttctcaGTCCAGACGTTAATAAATGCAGTCTTActctttaaatattattgtattattggaCTGCCTGtttcataaacatttatttacactgtttcACAGTAACTGTGGTACCTACATGTCCAAATCATTCCTGCttctaaattattttcaagGCAGTAGAAAGCACAAAGTGAAAATCAGGCAATTATGATATCTCTTGTTCTGTATTTCATATATTACAAATTTATCTCCAGATTGCATGCCAGCAGTAGTCATGCTTTCTGAAGTGACGTGGCCAAACCAAAAGGCCTACCTAGTGATTTATGCATCACTTACATAAttacaagagaaaacaaacctgAGCAGTGCACACTTCTGGGAAACAAATTTGACCCTGCTTTAGTTATAGTAACTAAATTCCTACTTTTTTGTGGCAATTTGTATTGATTCACTTTTATTAGGCTTCAattcatacttaaaaaaaaatctgtattggtCACATACATAATCTAGAATGAACGCGGATTAAAATGTCTCAATTTATTTGTCCATTTCCTACTGTGCTCTTTTACTCCAGATACCATTGTGATGGGTGCaacaacagaacagaaataaataatggcaCACGTTTAATACAAAAGATGACTTGGGTTACAGATGTGTTGTCATATGCAGTCGCAAtcagaaatgttaaaaaaaaaattgaaaatatctatttaaaagtaattcatATTCCTATAAATGAGCCTCCATATCTCCTACATTTCCAAAAAGCAATACAGTATGTAAAGTCCTGCATTAATTAACAGGCAGTCTCTTAATTGTGGAGATCATCAGATTGTGAATGCCAGTTTGTGGAGAAAGCTTCTGAAGAATAATATGCCAACTTGAACAGATCCCAGATGTCACAGAAAAGGTGAAActgttcaattcaattcagtggTTTCCTGAAGTTTATGAAGGTACCCATTACATGCACAAGCAGGTTTGTAGATCTATCGGCCATGTCTCTCTCACAACGAGAGAGAGATCTGTATTGCACAATCCACAGACACGTGACATAAGTCATTGCATGTTTTGTAAAGGTGTAGTCTCGTGGACGTACACAGTACATATATGTGTGCTGCGTGTCCAGAGCGAGGGGAGGATTGCACTAGTATTTTCCTCGCTCTCCCGTGGGCAGCAGGACCATGTTGTGGATGTGATGCCCACTCATCCCGTtgatgaagaggaggaagacTGCGGTGAACTGACACCAGAAGGTCAGGGTGAAGCCCAGGAGGCTGGCCTGGCTCCTCAGCAGCAGGACGAAGCCCAGCAGCCCGGCGGCCGCCAGCACGGCGGAGAGGAGGACCAGCACGGACCCGAAGGCCCACCTTCTCCTGGCGTCCTGGCCCTCGCACACCTGCGACATGACCAGCAGCTCCAGGCCGAAGATGGCCGCCACCACCGCGAATGACACCACGGTCCTGCAGAAGACGAGCCGCACCGGGAGGCCCTCGATGGCCGCCTGTGTGAGGTCAGTGGTGCAGTTGGGCTGGGCGCCGTCCTCTGTGGTGCAGAAGTACCAGAGTCCAAACATCTTCCCGTCGGAGAGCAGCCAGTGCCCGTCGCACACCGCGATGGAGGACAACACGATGGCCATTGTGATGCACAGGACGATCAGGCCGCGTGTCACAGTCTCCAGAAATTGCATTTGTGGTTTCGGGCCGGGATGCACGCCTGGATTCTGGaTTTTTATAGCTGTCATAGTGGTGGTCTTTGCCTGCTGAGCAGTCTTCGAATTGAGGAAAACCAGCAGGAGAAACGTGCAAATGAGGAGAGCAGACTCGAGTCAAAGGTTCAGTGATAGAGAGCTG

Function

GO: NA

KEGG:

id description
K04588 SCTR; secretin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000797 True 4664 mRNA 0.43 11 3638170 3651877

Neighbor

gene id symbol gene type direction distance location
AMCG00000798 NA coding upstream 46028 3583180 ~ 3592142 (+)
AMCG00000790 NA coding upstream 62262 3569413 ~ 3575908 (+)
AMCG00000793 NA coding upstream 90932 3533139 ~ 3547238 (+)
AMCG00000791 NA coding upstream 115817 3517722 ~ 3522353 (+)
AMCG00000792 NA coding upstream 133205 3490741 ~ 3504965 (+)
AMCG00000799 NA coding downstream 4990 3656867 ~ 3660538 (+)
AMCG00000806 c1ql2,LOC104939125,LOC102789465,LOC100698439 coding downstream 34382 3686259 ~ 3698536 (+)
AMCG00000805 NA coding downstream 110942 3762819 ~ 3763343 (+)
AMCG00000808 ccdc93 coding downstream 256777 3908654 ~ 3928160 (+)
AMCG00000812 NA coding downstream 350249 4002126 ~ 4047678 (+)
G126215 NA non-coding upstream 79746 3555566 ~ 3558424 (+)
G126068 NA non-coding upstream 554583 3081746 ~ 3083587 (+)
G126054 NA non-coding upstream 569707 3010243 ~ 3068463 (+)
G126050 NA non-coding upstream 752986 2870916 ~ 2885184 (+)
G126044 NA non-coding upstream 871631 2766255 ~ 2766539 (+)
G126240 NA non-coding downstream 796 3652673 ~ 3656581 (+)
G126248 NA non-coding downstream 18925 3670802 ~ 3673176 (+)
G126301 NA non-coding downstream 74043 3725920 ~ 3730056 (+)
G126368 NA non-coding downstream 592855 4244732 ~ 4245036 (+)
G126500 neb,LOC106518889,LOC106951376,LOC103134835 non-coding downstream 1224990 4876867 ~ 4880503 (+)
AMCG00000734 NA other upstream 1824013 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 1939597 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 2032139 1599696 ~ 1606031 (+)
G125561 NA other upstream 3234579 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 1809424 5461301 ~ 5465981 (+)
G127134 NA other downstream 4965322 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 6448406 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 8347787 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 8637073 12288950 ~ 12385042 (+)

Expression


Co-expression Network