AMCG00000804


Basic Information

Item Value
gene id AMCG00000804
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3553047 ~ 3656561 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000804
agagGCCAGGAAGCGGCAGCAAACACGCCTGTGCAACGGTCATAGCGAGTGGGCCTCCTGTCAACGGCAACTGAAGGAATAATGTCCCAGgctGACTTTGAAAAAGCTGCGGAGGAGGTGAAGAACCTGAAAACAAAGCCTTCTGACGCGGAGGTGCTGGAGATCTATGCTTTATACAAACAGGCCACGGTGGGGGATTGCAACATAGcACGCCCGGGTTTGTTTGACTTGTCTGGGAAAGTGAAATGGGACGCCTGGGACGCACGGAAAGGCATGAGCAAAGAGGAGGCGATGAAGACGTACATCGAGAAAGTGGAGGCGTTGAAGGCGAAATATGGGCTGTAAAGACTTGTTGACTGGAACAAGCACGTCCGTTAAGCCATGGTACCTGAACGCAGTGAAACCATCTGGTCAGCGTTCTGCCGTAAACCTACGATGCCTTAAAACAGTGGCGGCCGAGACGCGTGACGTGATCAAGGCCGAGCGTCTCGTTGAGATTGTGGTGTCTGCGACCAGAGACCGAAAGACCATCAACCAGCAGTTTCTACACGGAAATTCAAAACTGGTTCTTGTTGTACTGTTTGGTTTAAACCGATAAAGTAATTTCATagtattttgatgtttttgagtatttttttttggtctggAATATTATTTGACATTAAATTCCTGTGAGAAACAGGAATCGAGTGACTCCACGAACCATGAGAACGGGAGCTTGTTGACTCTTGTGTAGTAGCATCTGGGAAATGGGAAATGGGAAACATCACACATTTTAACtagtatttgaaatattaaattattattttatacgtATTAGTATGAGAGATCAGTGCTTGTATTGCATGACATTCAACACTGATTATACACACCTACCCATAAGAAAACAGTTTTAGACTTTGTTACTGAAGTaagattgaaatgcatttctgcaGCAACTGGTTTCAAATTAAACCATCTTCGATGCTTTCTAAAATCAGTCTCATTATGTACTGCACAAACAGATTTGATTTGGCACGGAGTCAATCTATTCAAAGGGTTGGGTTTCAGATAACGGGGTGGGTTTTGAGGCCGTGAGGAAGGTCAAGAAACACACCCTTCATTAATCACCTGCTGACATCACAAATTCAATCATG
>TU158313
gtgttttttagagGCCAGGAAGCGGCAGCAAACACGCCTGTGCAACGGTCATAGCGAGTGGGCCTCCTGTCAACGGCAACTGAAGGAATAATGTCCCAGgctGACTTTGAAAAAGCTGCGGAGGAGGTGAAGAACCTGAAAACAAAGCCTTCTGACGCGGAGGTGCTGGAGATCTATGCTTTATACAAACAGGCCACGGTGGGGGATTGCAACATAGcACGCCCGGGTTTGTTTGACTTGTCTGGGAAAGTGAAATGGGACGCCTGGGACGCACGGAAAGGCATGAGCAAAGAGGAGGCGATGAAGACGTACATCGAGAAAGTGGAGGCGTTGAAGGCGAAATATGGGCTGTAAAGACTTGTTGACTGGAACAAGCACGTCCGTTAAGCCATGGTACCTGAACGCAGTGAAACCATCTGGTCAGCGTTCTGCCGTAAACCTACGATGCCTTAAAACAGTGGCGGCCGAGACGCGTGACGTGATCAAGGCCGAGCGTCTCGTTGAGATTGTGGTGTCTGCGACCAGAGACCGAAAGACCATCAACCAGCAGTTTCTACACGGAAATTCAAAACTGGTTCTTGTTGTACTGTTTGGTTTAAACCGATAAAGTAATTTCATagtattttgatgtttttgagtatttttttttggtctggAATATTATTTGACATTAAATTCCTGTGAGAAACAGGAATCGAGTGACTCCACGAACCATGAGAACGGGAGCTTGTTGACTCTTGTGTAGTAGCATCTGGGAAATGGGAAATGGGAAACATCACACATTTTAACtagtatttgaaatattaaattattattttatacgtATTAGTATGAGAGATCAGTGCTTGTATTGCATGACATTCAACACTGATTATACACACCTACCCATAAGAAAACAGTTTTAGACTTTGTTACTGAAGTaagattgaaatgcatttctgcaGCAACTGGTTTCAAATTAAACCATCTTCGATGCTTTCTAAAATCAGTCTCATTATGTACTGCACAAACAGATTTGATTTGGCACGGAGTCAATCTATTCAAAGGGTTGGGTTTCAGATAACGGGGTGGGTTTTGAGGCCGTGAGGAAGGTCAAGAAACACACCCTTCATTAATCACCTGCTGACATCACAAATTCAATCATGTATTCAATAAACTTAGGGTTTTGATGcta
>TU158314
gtgttttttagagGCCAGGAAGCGGCAGCAAACACGCCTGTGCAACGGTCATAGCGAGTGGGCCTCCTGTCAACGGCAACTGAAGGAATAATGTCCCAGgctGACTTTGAAAAAGCTGCGGAGGAGGTGAAGAACCTGAAAACAAAGCCTTCTGACGCGGAGGTGCTGGAGATCTATGCTTTATACAAACAGGCCACGGTGGGGGATTGCAACATAGcACGCCCGGGTTTGTTTGACTTGTCTGGGAAAGTGAAATGGGACGCCTGGGACGCACGGAAAGGCATGAGCAAAGAGGAGGCGATGAAGACGTACATCGAGAAAGTGGAGGCGTTGAAGGCGAAATATGGGCTGTAAAGACTTGTTGACTGGAACAAGCACGTCCGTTAAGCCATGGTACCTGAACGCAGTGAAACCATCTGGTCAGCGTTCTGCCGTAAACCTACGATGCCTTAAAACAGTGGCGGCCGAGACGCGTGACGTGATCAAGGCCGAGCGTCTCGTTGAGATTGTGGTGTCTGCGACCAGAGACCGAAAGACCATCAACCAGCAGTTTCTACACGGAAATTCAAAACTGGTTCTTGTTGTACTGTTTGGTTTAAACCGATAAAGTAATTTCATagtattttgatgtttttgagtatttttttttgGTTATTGTTTACACAGATGATATTGATAGAAAACTGATCAATAAAGCGCTCCCTTTGATCAAAAGCCTGTGGGATTGCTTATTGTTTTGAACGAAGTCTAGAAGTACTGCTGTATAGCGGGCAAATGGACAGGGATGCACAATCTTGTTATGTTTGTCTAAGGATTTTAGAGCAActgtctaataaaataattttgacaTCCCTTCAAACTTCTACAACCTTTTTGATCATGAACgagaaagtaaaatatataatatcagtAATCATCATGAGTATAAATAGCAGGTTTGCAACTATGAAAGATACTTGCAAACCTGTCGTCTTCCTTTTTTTCTATATTGTTGAGCACTTATGTATTCATAACAATGTCGTTTTTCTTGCTTTTAGAAGATCTTGTTGTGAAACGCACTGTAATCCAAACCCTGACCTGTGTGTCTGGTCTGTTTCAACCTTTATCCACAGTAGCCCTACCAAAATTGGTACTTTGTCATAACTCAATTAGTTAAAAATAGCATTCTAGCATTGGGACAGCACTACTATGGATGAGGACCAGCATAGGAATGACTTGaactagaacataagaaaatgtacaaatgagaggaggccattcgacccatcgtgcacCCAACTGTCATATAAAATGTAGTATACTGTGGAAGAATATTTTGCTTAATtagagtgacattttaaatacatttgttagttttgtgttcaaaatacaatattgatttATGTGCCCACAATTAATCAGACACTGAAGAACCCacgtttattaataataatatgatttaagTGTTATGGTATGCTCTGTACTTTTGCATGCTGGTAATACTGaggatttatatttaatattatcgGCCTTTCCCCACTCTCTCCcagtttattattgtatatatggGTCTGGACGACATTCTGTTGATCATGCTTTCTGTCCTGCAGAAGTTTTGGCTTCATAAACacattgttgtatttgtaattgctGCAGATGTGCTAATTTCTTAGCATAACCATTGCCAGGCGGAATGAAGACTATATGGATTTAACTTCCTGACTATTGCAGTACAATAGAAACTACTCCACCTTCAGCTGCTTATTATTTCCCACTGTGATAAGCTGTAACAAATTAAGTGCTTGAAAGAATCTGTTTGAAACTGCCTCGTTACCTCTTCTGAGAGGCTGTTTGAGGGATTTCCCCAATTGCACTCTCTCATGTATTCACCAATAAAATCAGCC

Function

GO:

id name namespace
GO:0000062 fatty-acyl-CoA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000804 False 1136 mRNA 0.44 4 3652686 3656552
TU158313 False 1174 TUCP 0.44 4 3652657 3656561
TU158314 True 1883 lncRNA 0.40 5 3553047 3656561

Neighbor

gene id symbol gene type direction distance location
AMCG00000794 NA coding downstream 35837 3511119 ~ 3517210 (-)
AMCG00000788 NA coding downstream 238922 3276258 ~ 3314125 (-)
AMCG00000784 NA coding downstream 315411 3233421 ~ 3237636 (-)
AMCG00000785 LOC106586374 coding downstream 347436 3181479 ~ 3205611 (-)
AMCG00000778 hspe1,LOC107690609 coding downstream 429247 3122208 ~ 3123800 (-)
AMCG00000802 NA coding upstream 5686 3662247 ~ 3667451 (-)
AMCG00000807 NA coding upstream 63852 3720413 ~ 3745555 (-)
AMCG00000811 insig2,LOC106582059 coding upstream 234462 3891023 ~ 3894951 (-)
AMCG00000809 htr5a,htr5ab,LOC107684958,LOC107550720 coding upstream 273716 3930277 ~ 3933300 (-)
AMCG00000810 ddx18,LOC107673737 coding upstream 278236 3934797 ~ 3941315 (-)
G126275 NA non-coding downstream 70 3550840 ~ 3552977 (-)
G126037 NA non-coding downstream 994798 2557991 ~ 2558249 (-)
G126005 NA non-coding downstream 1032827 2427941 ~ 2520220 (-)
G126020 NA non-coding downstream 1090559 2460715 ~ 2462488 (-)
G125875 NA non-coding downstream 1725305 1822252 ~ 1827742 (-)
G126296 NA non-coding upstream 17720 3674281 ~ 3676927 (-)
G126369 NA non-coding upstream 588168 4244729 ~ 4245041 (-)
G126428 NA non-coding upstream 980806 4637367 ~ 4637640 (-)
G126429 NA non-coding upstream 981397 4637958 ~ 4638285 (-)
G126430 NA non-coding upstream 984497 4641058 ~ 4641341 (-)
G126096 NA other downstream 403795 3131714 ~ 3149252 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 412558 3133876 ~ 3140489 (-)
AMCG00000771 nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546 other downstream 503031 3044167 ~ 3050016 (-)
G126089 NA other downstream 511083 3036931 ~ 3041964 (-)
G126017 NA other downstream 1095164 2451868 ~ 2457883 (-)
G126427 NA other upstream 979535 4636096 ~ 4636516 (-)
AMCG00000838 cacnb4,LOC108434427 other upstream 1300577 4957138 ~ 4982651 (-)
G126700 NA other upstream 1916144 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 3033007 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 3973354 7629915 ~ 7645722 (-)

Expression


Co-expression Network