AMCG00000806 (c1ql2,LOC104939125,LOC102789465,LOC100698439)


Basic Information

Item Value
gene id AMCG00000806
gene name c1ql2,LOC104939125,LOC102789465,LOC100698439
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3686259 ~ 3698536 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000806
ATGGGCCTCGTTCACAGCAATGCTGAGAGGAAGCGACTGGTTGCTGCTGTAGTTGGCATCGTCATGGTGTTGGTTCTCATTATTGCGATACCACTGCTGGTGCAAAGTCCCCAGACTGCGGCTCACTATGAGATGCTGGGCACTTGCAGGATGATCTGCGATCCTTACAACCCCAAGCCCAGTGCCACCGCCGTGGAAGTCATGCAGGACTTGAGTGCCATCCCTCCGCCTCCGTTTATTCAAGGGACTAAAGGGGAGCCGGGACGGCCGGGGAAGCCGGGGCCGAGAGGTCCTCCTGGAGAACCCGGTCCGCCGGGTCCAAAGGGACCGCCTGGAGAAAAGGGGGATTCGGGAAAGCCTGGGTTCCCCGGGATAGTTTCGGGAACCGCCAGGACTGACACTGGAGCCCTTAGCACAGCAGTGACTGGTCCCAAGATAGCTTTCTACGTGGGTCTGAAGAACCCCCATGAAGGATATGAAGTTCTCAAGTTTGACGACGTCGTCACCAACCTGGGGAACCATTACGACCCGGCGACGGGCAAGTTCACCTGCCAGGTGTCCGGGATCTATTTCTTCACCTACCATGTCCTGATGAGAGGTGGCGACGGCACAAGCATGTGGGCAGACCTCTGCAAAAATGGACAGGTGCGGGCTAGTGCCATCGCCCAGGACGCCGACCAAAACTATGACTATGCCAGCAACAGCGTGGTCCTGCACCTGGACTCTGGAGACGAGATCTACGTCAAACTGGACGGTGGCAAAGCCCACGGGGGGAACAACAACAAGTACAGCACTTTCTCTGGTTTCATTTTGTACCCCGACTAA

Function

symbol description
c1ql2 Predicted to be located in extracellular region. Orthologous to human C1QL2 (complement C1q like 2).

NR:

description
PREDICTED: complement C1q-like protein 2

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K23284 C1QL; C1q-related factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000806 True 825 mRNA 0.57 3 3686259 3698536

Neighbor

gene id symbol gene type direction distance location
AMCG00000799 NA coding upstream 25721 3656867 ~ 3660538 (+)
AMCG00000797 NA coding upstream 34382 3638170 ~ 3651877 (+)
AMCG00000798 NA coding upstream 94117 3583180 ~ 3592142 (+)
AMCG00000790 NA coding upstream 110351 3569413 ~ 3575908 (+)
AMCG00000793 NA coding upstream 139021 3533139 ~ 3547238 (+)
AMCG00000805 NA coding downstream 64283 3762819 ~ 3763343 (+)
AMCG00000808 ccdc93 coding downstream 210118 3908654 ~ 3928160 (+)
AMCG00000812 NA coding downstream 303590 4002126 ~ 4047678 (+)
AMCG00000816 NA coding downstream 600995 4299531 ~ 4306351 (+)
AMCG00000814 slc35f5,LOC106581698 coding downstream 631832 4330368 ~ 4349297 (+)
G126248 NA non-coding upstream 13083 3670802 ~ 3673176 (+)
G126240 NA non-coding upstream 29678 3652673 ~ 3656581 (+)
G126215 NA non-coding upstream 127835 3555566 ~ 3558424 (+)
G126068 NA non-coding upstream 602672 3081746 ~ 3083587 (+)
G126054 NA non-coding upstream 617796 3010243 ~ 3068463 (+)
G126301 NA non-coding downstream 27384 3725920 ~ 3730056 (+)
G126368 NA non-coding downstream 546196 4244732 ~ 4245036 (+)
G126500 neb,LOC106518889,LOC106951376,LOC103134835 non-coding downstream 1178331 4876867 ~ 4880503 (+)
G126568 NA non-coding downstream 1422509 5121045 ~ 5124330 (+)
G126569 NA non-coding downstream 1428023 5126559 ~ 5126808 (+)
AMCG00000734 NA other upstream 1872102 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 1987686 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 2080228 1599696 ~ 1606031 (+)
G125561 NA other upstream 3282668 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 1762765 5461301 ~ 5465981 (+)
G127134 NA other downstream 4918663 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 6401747 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 8301128 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 8590414 12288950 ~ 12385042 (+)

Expression


Co-expression Network