AMCG00000808 (ccdc93)


Basic Information

Item Value
gene id AMCG00000808
gene name ccdc93
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3908654 ~ 3928160 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000808
ATGACCCACACATGACATCACTTCCCGTCCATCATGGCGGCCACCTCGGTGTTCCAGCGGGTGCGGACCGGGTCCAGACTGGGAGCCCAGTACGACCAGGACGGCAACATCATCCAGGTGGAGACCCGGGAAGATGAAGAACAGAATATTAAACTGGCGGAGATCCTGGAGCTGCTGTTGGCTGCTGGATACTTCAGGGCTCGAATCAAAGGGCTGTCTCCATTTGACAAGGTGGTGGGAGGGATGACCTGGTGCATCACAACCTGCAACTTTGATATCGACGTTGATTTGCTTTTCCAAGAAAACTCGACGATTGGTCAGAAGATAGCACTGACTGAGAAAATTGTCTCCGTTTTGCCGAAAATGAAATGTCCCCATCGCCTGGAGCCCCATCAGATCCAGGGCCTTGACTTCATTCACATCTTTCCCGTTGTGCAGTGGCTGGTAAAGCGTGCCATTGAAACCAGGGAGGAGATGGGAGATTATATTCGCTCCTATTCGGTGTCGCAGTTTCAGAAGACTCACCGCATCCCAGAAGAGGTGTATAAACCCCAGAGGAAATACAAGAGACAAGTCGGTGCTGAGGAGCTGGCGGACGAAGAGTCCCGCGTTCATTCCACGCTCCTGGAGTACGGGAGGCGCTATGGATTCAGCAAACAAGTCAGGCAAGACAAAGCCGAAGACAAGAAAGTCCCCTCCTCACAAGGATTACCACCTGGGATGACTGAAGTCTCCGAAGAGGAGGACCTTCAAGCAGCTGAAGAGcTTCGCATTAAGACGTTGATGACGGGAATGGCGGTGATGGCAAGCGAGGAGGGGAAGCTGACCGCCAGCACGGTGGGGCAGATAGTGGGACTGCAGTCGGAGGAGATCAAGCAGATTGCGTCCGAATACGCCGAGAAGCAAATCGAACTCTCAGCCGAGGACCGCCCTGAACGCTTCGGACCGGCCCAGCAGCACCGCAGACTGGTGGCGTCTCTCAACAAGCAGATCCAGCAGAAAACGAAGCAACTGGAAGAGcTCCAAGCGAAACACTCGGAAGTTCAAGCAGGCTGTGAGGAGGCGAAAATCAAGTTGACGGAGGCTACAAAACTCACAGAGAGTTTGGAGAAGGAACTTTCTGCTTTAGAAGAGGTCGAATCTCAAGCTGATTCAAGtGTCCTACAGAAACTGAGAGCCTTGGTTGCTATGAATGAAAACCTTAAAACCCAAGAGCAGGAATTCCGCACTCACTGCAGGGAGGAAATGACTCGTCTCCAGCAGAGCATCGAAAACCTGAAAATCGAGTCGGGAGACGACACGGGAGAAGACAAGgAACGAAACCAGCTCATAGAAAAACAGTACAACACCGACCGAGAGAAGCTACAGAAGATCCGGATGCTTCTGGCCCGCAGGAATCGGGAAATTGCTATACTGCAGCGAAAGGTTGACGAGGTGCCAAGCCGGGCTGAGCTAACCCAGTATCAGAAGAGATTTATTGAACTCTACGGTCAGGtggCAGCAACACACAAGGAAACCAAACAGTTCTTCACACTGTACAATACGTTGGATGACAAAAAGGTCTTCCTGGAGAAAGAGGTTAACCTGCTGAACTCAATCCATGACAACTTTCAGCAGGCCATGGCGTCTTCTGGAGCGAAAGAACAGTTTCTACGACAGATGGAGCAGATCGTAGAGGGCATCAAACAGAACAGAATTAAgATGGAGAAGAAGAAGCAAGAGAACAAAATGCGCCGCGATCAGCTAAACGACGAGTATCTGGAGCTGCTGGAGAAGCAGAGGCTGTACTTCAAGACGGTGAAGGACTTCAAAGAGGAGTGCAGAAAGAACGAGATGCTTCTCTCAAAATTGCGAGCCAAGGGGGCGTCTTAGACAACACTGTATATGTGAGCAACGTGTTTAGTGTCAAAGATTGTTTTCTACACATAGTCTATTGTAAAGTTTTTCTCAATGTAACCAAGAGCTCTTAAACCTGATCTGTAAACTAAACTCAGCTGTTTCCTGTTAGTTCATAGAGGACATTGAATCCGTTCTCATTCTCTCCCACATCTGTCATCGGAGCAAAACATCTGCCCAGAGCGCGATCACACACTAATAATGCCTGTATCGTCTGCCGTGAGCTCGTGCCCGCAGATTGGGTCCGCTACTCTGCTTAAGGTTAATTATGGTGAATGAAtttgctaattaaaatgttccacGTAATTGTGCAACAACAATGAGGTA

Function

symbol description
ccdc93 Predicted to be involved in Golgi to plasma membrane transport. Predicted to be located in early endosome. Orthologous to human CCDC93 (coiled-coil domain containing 93).

NR:

description
PREDICTED: coiled-coil domain-containing protein 93 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000808 True 2223 mRNA 0.50 22 3908654 3928160

Neighbor

gene id symbol gene type direction distance location
AMCG00000805 NA coding upstream 145311 3762819 ~ 3763343 (+)
AMCG00000806 c1ql2,LOC104939125,LOC102789465,LOC100698439 coding upstream 210118 3686259 ~ 3698536 (+)
AMCG00000799 NA coding upstream 248116 3656867 ~ 3660538 (+)
AMCG00000797 NA coding upstream 256777 3638170 ~ 3651877 (+)
AMCG00000798 NA coding upstream 316512 3583180 ~ 3592142 (+)
AMCG00000812 NA coding downstream 73966 4002126 ~ 4047678 (+)
AMCG00000816 NA coding downstream 371371 4299531 ~ 4306351 (+)
AMCG00000814 slc35f5,LOC106581698 coding downstream 402208 4330368 ~ 4349297 (+)
AMCG00000815 NA coding downstream 423218 4351378 ~ 4366946 (+)
AMCG00000819 NA coding downstream 470426 4398586 ~ 4399059 (+)
G126301 NA non-coding upstream 178598 3725920 ~ 3730056 (+)
G126248 NA non-coding upstream 235478 3670802 ~ 3673176 (+)
G126240 NA non-coding upstream 252073 3652673 ~ 3656581 (+)
G126215 NA non-coding upstream 350230 3555566 ~ 3558424 (+)
G126068 NA non-coding upstream 825067 3081746 ~ 3083587 (+)
G126368 NA non-coding downstream 316572 4244732 ~ 4245036 (+)
G126500 neb,LOC106518889,LOC106951376,LOC103134835 non-coding downstream 948707 4876867 ~ 4880503 (+)
G126568 NA non-coding downstream 1192885 5121045 ~ 5124330 (+)
G126569 NA non-coding downstream 1198399 5126559 ~ 5126808 (+)
G126570 NA non-coding downstream 1199154 5127314 ~ 5127656 (+)
AMCG00000734 NA other upstream 2094497 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 2210081 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 2302623 1599696 ~ 1606031 (+)
G125561 NA other upstream 3505063 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 1533141 5461301 ~ 5465981 (+)
G127134 NA other downstream 4689039 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 6172123 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 8071504 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 8360790 12288950 ~ 12385042 (+)

Expression


Co-expression Network