AMCG00000823 (LOC104959882)


Basic Information

Item Value
gene id AMCG00000823
gene name LOC104959882
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4636292 ~ 4642779 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000823
ATGGCGGCCGGGCCGAGCCGCTGCTGGGGGCTGCGGTGGGCTTTGGGACGGATCTGCATCTTGTCTCTGTTGCTTCCGCTCGCCAGCTGTCACACCTGTAAGCACCGTGTGCCCGACTCGTCCGAGGATAAGCTCTTTCCTCAAGCAATTGATTACTTACAGAAGGCATTTCAAGTTCGGAAGCAGAGCGGACCAATTTTGCTAAGCAGACAATGTTCGACCAATCAGTATCTGCGGAAGAAAGATGACCCCCACAGATACTGCCAGGGAGCGTGTGCAGAGACCACCCGTTGCGGACCCGTCGCTGTGCCAGAAGACCACTTGCAGCAATGCAAGATGTGCAACGCGACGGGGAAGCCATGTGGTGCTGCCGGACCACCCGACGGGCCGGGGATCCTGGAGGCCGACTTCCTGCTGTACGTGAGCGCGCTGACGACGAAGCGCTGCGGGCAGGAGAACATCGTAGCGTACGCCGCCTACTGCCAGCTGGAGGCCGAGGTGGACAGGCCTATAGCGGGATACGCAAACCTCTGCCCAGCCATGATCTCGACACATCCTCAGGACTTTATCGGCATGCTGTCCACTGTGAAACACGAAATCATTCATGCACTGGGTTTCTCAGCTGGGCTTTTTGCGTTTTATCACGATGATGATGGGAAGCCCCTGACACCGAGATATGCAAGTGGATTACCGCCATTCAACGAGAGTCTGGGCCTGTACCAGTGGAGTGAGAAGATCATACGGAGAGCCACCAGGCTGTGGGACATCCGTGGCGACAGGATGCTAAGGCATGAAGTGTCCCTTCTGGTCACGCCGCGTGTGGTTGAAGAGGCAAGGAGGCACTTCGACTGTCCGATCCTGGAAGGCATGGAGCTCGAGAACCAGGGCGGGCTGGGAACCGAGCTCAATCACTGGGAGAAGAGGCTGCTAGAGAACGAAGCCATGACTGGATCTCACACGCAGAACAGAGTGTTTTCCAGGATTACGTTGGCGATAATGGAAGACACGGGGTGGTACACGGCCAACTACAGCGTGGCAGAGAGGCTCGACTGGGGCAGAGGGATGGGCTGTGACTTTGTGATGAAGAGTTGCAGGTTCTGGATTGACAAGCAGCGACAACTGAATCAGACTGTGGCGCCATACTGTGACGCTCTGAGGAGTACACCACTGAAGCTGACCTGCCGGCAGGACCAGATGGCCGTGGCAGTGTGCAATTTACAGAAATACCCCAAGATTATCCCGTTGGAGTATCAGTACTTTGATCGCATCCCTGACGTACCTGTGCCGGAGTTGCCGTATTACGGTGGCTCTGTGGAGATAGCGGACTACTGCCCTTTCAGCCAGGAGTTCAGCTGGCATCTCAGTGGAGAATATCAGCGCAGCTCGGACTGCCGGCTCTCAGAAAACCAGCCAGATATGTCCAGAAATTACGGTGCCGAGGAGTATGGCCCCCAGTCAGTGTGTCTTCTCCAGAAGTCTGCTTTTGTCATGGCGCAGTGCATCAGGAGTATGGTCTATCCCGACTGGGGGAGCGGCTGCTATAAGGTAACGCCAGACAAAGACGAGGGGGTCTCCTGTTCTATCCAAGGGCTGACCGTCTGGGTGCAGGGCCACGCGTTTCTGTGCAGCCGTGCGGGTCAGGTGCTGCGCGTCAATGTCGCGGTGAGAGGCTGGGTGTACACCGGGACCCTCCTCTGCCCATCTTGCTCCGACTTCTGCAGCATGTGCCCCCCCGATCGAGACCCTCCTTTCTTCAACAAGTCCAGAAGCGTTCCCATAgatccgtgctccagctcatccagctTGGTGGTGACTCTGTGGCTGCTTCTGGTGAACCTCATCCCCCTCATCGCTGGGTTCTTCCTGTGCGCGTGGAACTGA

Function

NR:

description
PREDICTED: leishmanolysin-like peptidase, partial

GO: NA

KEGG:

id description
K13539 LMLN; leishmanolysin-like peptidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000823 True 1881 mRNA 0.57 15 4636292 4642779

Neighbor

gene id symbol gene type direction distance location
AMCG00000819 NA coding upstream 237233 4398586 ~ 4399059 (+)
AMCG00000815 NA coding upstream 269346 4351378 ~ 4366946 (+)
AMCG00000814 slc35f5,LOC106581698 coding upstream 286995 4330368 ~ 4349297 (+)
AMCG00000816 NA coding upstream 329941 4299531 ~ 4306351 (+)
AMCG00000812 NA coding upstream 588614 4002126 ~ 4047678 (+)
AMCG00000822 LOC106574436,LOC106575256 coding downstream 9203 4651982 ~ 4667416 (+)
AMCG00000829 snx4,LOC107660619,LOC107741918,LOC107555933,LOC107673751,LOC107714137 coding downstream 41916 4684695 ~ 4703265 (+)
AMCG00000830 NA coding downstream 65319 4708098 ~ 4708621 (+)
AMCG00000828 NA coding downstream 67852 4710631 ~ 4720547 (+)
AMCG00000827 NA coding downstream 85797 4728576 ~ 4751344 (+)
G126368 NA non-coding upstream 391256 4244732 ~ 4245036 (+)
G126301 NA non-coding upstream 906236 3725920 ~ 3730056 (+)
G126248 NA non-coding upstream 963116 3670802 ~ 3673176 (+)
G126240 NA non-coding upstream 979711 3652673 ~ 3656581 (+)
G126215 NA non-coding upstream 1077868 3555566 ~ 3558424 (+)
G126500 neb,LOC106518889,LOC106951376,LOC103134835 non-coding downstream 234088 4876867 ~ 4880503 (+)
G126568 NA non-coding downstream 478266 5121045 ~ 5124330 (+)
G126569 NA non-coding downstream 483780 5126559 ~ 5126808 (+)
G126570 NA non-coding downstream 484535 5127314 ~ 5127656 (+)
G126572 sec22a non-coding downstream 485728 5128507 ~ 5130661 (+)
AMCG00000734 NA other upstream 2822135 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 2937719 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 3030261 1599696 ~ 1606031 (+)
G125561 NA other upstream 4232701 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 818522 5461301 ~ 5465981 (+)
G127134 NA other downstream 3974420 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 5457504 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 7356885 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 7646171 12288950 ~ 12385042 (+)

Expression


Co-expression Network