AMCG00000824


Basic Information

Item Value
gene id AMCG00000824
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4669268 ~ 4683641 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000824
TTCGCATGCAAGCAGGGAAAGGGCTGGACGTTTTGATTTTTTGCTATTGTTACTATCCGGAGAATGGGGTACTGCTGGACGTTCACAGCTGCAACATCTGTCCTGATCCATTCTTTCTatgttCACGTTCTTGCCTTTACACACATCAACAGCAACTTCTGTAAATGGTGCGACTATTCCAGACCACAGTGTGAGGAGAATATCTGCTCCACGAACTGCTCCATCGGCTCGTTCTGTTCCCAGGCGGACGAGATCTGTGTGGCCATAtgGAGGCAGGACAACGGGAACGTGAGTGTCCGGACGCTGTGCCACCATCCCCAGCACGCGCTAGAGGACATCGTGCTGTCCAATTACTCGAGCAGCGAGTGCCGGATGGTGCAGCAGTCCTCTGATGAAGGCACTGTGTACATCTGCGCCTGTGTGAATGAGCATGAGTGCAACGACAAGCTGATATTTGAAAAGGGCTTCAACGGGTACTCGAGGTTACAAAGCAAGGATATCATTCCTGTGGTAGTGATCAGCCTGCTCCCACCTCTCTTGGTTGCCATCATAGCCACCATGGCATTTTACCTTTACCGCACCCGGCAACAGAACAAACATCCCAAAGACTGGTCTCCCAAACGTACCCATTACCAGTCCCTGGACATCCCAGAGAGCAGGCACAATGGGGAGTACAATGGGAAGCTGGGAGGCATCATTGACGACGGCCACTCGGATATCTCCTCCACGTGCGCCAACAACATCAACCACAACACGGAGCTGCTGCCCATTGAGCTGGAAGCGATGGTGGGAAAAGGCCGCTTTGCCGAGGTCTGGAGGGCCAGGCTGAACCACAACGCCTCGGGCCAGTACGAGACGGTGGCCGTCAAGATTTTCCCCGCGGTGGAGTACTCCTCCTGGAAGAATGAGCGCAAGATCTTCTCGGACATCAACCTCAAACACGAGAGCGTGCTGCAGTTCCTCACGGCCGAGGAGAGGGGCAGCGGGGTACAGAAGCAATACTGGCTCATCACGGCCTACCACAGCCTGGGAAACCTGCAGGAATACCTGACCAATCACGTGCTCAGCTGGACAGAGCTGCATCTGATGGCCGGGTCAATGGTTCGAGGTGTGGCCCACCTCCACAGTGACTACACGACCTGCGGGGTGCCCAAGATCCCCATCGCCCACCGCGACCTCAAGAGCACCAACATCGTGGTGAAGAACAAGACAGAGTGCGTTCTGTGTGACTTCGGGCTGGCGCTCAGACTGGATCTCTCTCTCACGGTGGATGACTTTGCCAACAGTGGGCAGGTCGGTACTGCTCGCTACATGGCACCAGAGGTCCTAGAGTCTCGTGTCAACCTAGAGGATCTGGAGTCCTTCAAACAGATGGACGTGTACTCCATGGCCCTGGTCTTATGGGAAATGTCATCGAGGTGTGATGTCATAGGGGAGGTGAAGAGCTATGAGCCGGCGTTCGGCTCCAAGGTCTGCGAGCAGCCGTGTGTGGAGAGCATGAGGGACCTGGTTCTCCGGGATCGGGGCCGGCCGGACATTCCCAGCAACTGGCAGATACATCAGGGCATGAAGTTCCTGTGTGCGACTATCCAGGAGTGCTGGGACCACGACCCCGAGGCCCGACTCACGGCCCACTGCGTGCAGGAGCGCTTCTCTGCGATGGGGCAGGAGCAGAGCGAGGACAtcctgaacaacaacaacagccaccCCCGCTTCCCCGCGGGCCCCGAGCAGAGGAAACCAGCGAGTAGCGACGTCCAGAAACCCTCGGCCCTTGACGGGATTGCGACTGTGCAGCTTGTGACCGAGGTGTAGAGGCCAGCGAAGAAATCGGAGCGCTGTGGGGCTCGTTCCCAGGATGTGCACTTCTGTGTAGTCAGACCTCAGGAGTGGTTTAAACTTTGAGATATCCTGGACCCGTTGGATGGAGCAGGGCTGAAGATGTGGACAAGATACTGCTTCACGAAAAAAAAAGAGCTGGTCTCTTTTTATGATGTATCTCAGATATTCTATCGCTGTGCATTTATGAACATTTTATATCACTGAAGACTTTTTCATTGCTCTCAGATACAGAAAGagtgggatttttatttttaaagagatgtGATCATTGTTCTGCATGATACGATTCTTTAAAGCAGAATTTAACCACTCTAACCGAAGCCCCCTTTGAagtaaacagaacaaaagcagtttaaaaaggATATTGcatcaatatattaaatgtgaaatgtaccAATTGAGgctttacttttttattacttGTAATCTTATAAAAGACCTATCATAACTATAGTATAAGACCCAGTATAACTATAGTAAAAGACCCATTATAACGAGCTAGATTTCTCTTTGCCTCACATGAACACACAGTTTCCCAGGCAGCTGTGTGGTCTGGCCTGTCTTGGCTCTGGCCTGAAGCACTCCCAAGAATAGAAAGACAAAATATGGCTATGGTGTCTTCTTTGGATATTGAGCTTGATTAATCCCGGgctcttgcaaaaaaaaaaaaaaggcaaatttgTCAAAGAAACTACAATAAACAAAAGCCACATCATCTCAAGACGAAACCAAAGGAATAAACAGCTGCTTCTCACATTGTTTTTAACCAATAGTTCCACGTCTCTGCTGAAACAATGCCTGCTTTTGAAATCTAACACATTCACTTGATCGGTCTTTTCATTTGTAACCGAggagttttgttgtttttcagggtCATTTGTCTTAACTTGGTGCGTTTGATTCCGAAGGTCTGCAGTCTTTTACGCGCCTGTGTGCTCTACAGTGTTTATAGCACTAGAACATATCATATGGCcatgtaaaaatatacagtcCATCCCCCTGTATAAACAAAGTTTAACTTCCTAAAGCAAAGCGACCATTTTCTACATGTGTGGGTCGTCACCTCTGAATTGGGTTTCTTGTTATGGAAGCCCTTTATAAAGACTATAGATTTGTTTTGGTCGAACAATTCTAAGGATAGCATGAAGGAAAGATCTGGAGATGGATAGCATTTAAAagatgattttaattttgttccaCGGTCTTTTAAATTGAGTCTGTATGATCCGCAGGTGATATAGTTTGAAATCAACTACATTGTAGTAGAATTGAGGAATGAGAAACGCACATTGCAattcaacagaaaataactAGACCGGAttaaattctgaaatgaaaaactcaacaacaaaaaaaaacatttacaagaaaAGGCTTTTGGTCTGTACAGCACATGCAAGTTACATTTGACTGATCTCTGCCAAAGCGCTGTCTTTTATAGTAGCCATCACGCTGATTTAAATCATAAAGGCATTAGTTGGGCCCGCGTTAATGCAGCTCTTTAGATATCGCGCTGTTACCATCCGGAAAACAGACCTCTGTGTGTAACGCAATTTCACTCTGCTAGTCATTTGAAAAGTCATGTGATTGATGCTGCTTCCTAACTGGCTTTGAGTCACAAAAAACAGGGCCCTGTAATTCAGATTTACTATCGGAAGGTTAATAAATTAGCCCTATTAAACGTCGGTTAAAATCAGGTCAAGTCACATATTTACTCTCTTATTAGCCAATAAGCATGGCTGAATAGTTACTGattggcatatatatatataccttgtttttttccccctcaaatGCCCTTTAGTGTGGACAATATAAGCTGATTTATGAATGGCATAATCATAATGGAtaattcatcatcatcatcaatctTTAATATTTGTCcatacctatatatatacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000824 True 3752 mRNA 0.47 7 4669268 4683641

Neighbor

gene id symbol gene type direction distance location
AMCG00000825 LOC107714772,LOC106574437,LOC104928565,LOC106575257 coding downstream 18155 4646961 ~ 4651113 (-)
AMCG00000820 NA coding downstream 204524 4429747 ~ 4464744 (-)
AMCG00000821 NA coding downstream 265127 4401739 ~ 4404141 (-)
AMCG00000817 NA coding downstream 281548 4380615 ~ 4387720 (-)
AMCG00000818 actr3,LOC107660280,LOC106575261,LOC104923131,LOC101155832 coding downstream 342691 4317018 ~ 4326577 (-)
AMCG00000836 NA coding upstream 180559 4864200 ~ 4938788 (-)
AMCG00000835 arl5a,LOC107555355 coding upstream 260576 4944217 ~ 4954174 (-)
AMCG00000839 NA coding upstream 330728 5014369 ~ 5024891 (-)
AMCG00000842 sec22a,LOC107722877 coding upstream 437466 5121107 ~ 5132844 (-)
AMCG00000843 pdia5,LOC107596065,LOC107555900,LOC107661141,LOC107660642 coding upstream 454316 5137957 ~ 5174410 (-)
G126432 NA non-coding downstream 25802 4642680 ~ 4643466 (-)
G126430 NA non-coding downstream 27927 4641058 ~ 4641341 (-)
G126429 NA non-coding downstream 30983 4637958 ~ 4638285 (-)
G126428 NA non-coding downstream 31628 4637367 ~ 4637640 (-)
G126369 NA non-coding downstream 424227 4244729 ~ 4245041 (-)
G126445 NA non-coding upstream 19498 4703139 ~ 4708851 (-)
G126476 NA non-coding upstream 89940 4773581 ~ 4777784 (-)
G126554 NA non-coding upstream 330227 5013868 ~ 5034697 (-)
G126563 NA non-coding upstream 432413 5116054 ~ 5119036 (-)
G126631 NA non-coding upstream 688608 5372249 ~ 5372459 (-)
G126427 NA other downstream 32752 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 1012707 3553047 ~ 3656561 (-)
G126096 NA other downstream 1520016 3131714 ~ 3149252 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 1528779 3133876 ~ 3140489 (-)
AMCG00000771 nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546 other downstream 1619252 3044167 ~ 3050016 (-)
AMCG00000838 cacnb4,LOC108434427 other upstream 273497 4957138 ~ 4982651 (-)
G126700 NA other upstream 889064 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 2005927 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 2946274 7629915 ~ 7645722 (-)
G127292 NA other upstream 4735355 9418996 ~ 9419325 (-)

Expression


Co-expression Network