AMCG00000827


Basic Information

Item Value
gene id AMCG00000827
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4728576 ~ 4751344 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000827
CACAGATGTCACCCAGACTGGATTCCACGGCAGCTCTGTAGACGAAAccttttatgttcatttttgaTCGCTGCTTCTCTTGACACGGAGAAATGTCAAATCTTGAACTGTTTGCGTTGTCTTTTCGTACGGATCACAAAAGgtACTAATTATGAAGTGGACAGTCATGTAGAGATTTGACACCACCAGCTGACACTTTATGATCACATTTGTTTCATGATGGAGGGCCCGCCATATGGCTGGTCTGAGTCCAGCAGGCAAAGTGTCGGGGATGTGTCTGTCTTACTGGAGACCGGCAACAGAAAGAGCGAAGCTGGGCACGTCCAAGAGCTGTTTCATGAGGACGCACAGGGATCTCAGAGTCACCCCAAACCCTGGTGGAAAGTGAAGTTGTTCGTGTGGGAACCAGTGCTGTTTGGGACCTGGGACGGGGTCTTCACCACGTGCATGATTAATATTTTTGGGGTCGTCCTGTTTCTGCGTACAGGGTGGCTAGTGGGCAACACGGGTGTTGTACTTGGCATGGTCCTGGTGTCCCTGGTGGTGCTGGTTGCTGTGGTGACGGTGATGTCAGGAATAGGCGTGTGCGAGCGCTGCAGCGTTGGCAGCGGCGGTGTTTACGCCATGATCTCCACGGTCCTCGGAGGGAGAGTGGGAGGCACCGTTGGCCTGCTGTACGTCTTTGGCCAGTGTGTTGCAGGTGCGATGTACATCACTGGCTTTGCAGAGTCCATCGCTGAGGTGCTGAACCTCACTAGTGTCTGGGCGGTTCGGGGGATATCCATCGGCGTGCTGCTGGCCTTGCTGGGAATCAACCTGGCTGGGGTCAAATGGATCGTGCGCCTCCAGTTGCTGCTGCTGGCCTTGTTGGCCATCTCCACCTTGGACTTCGTTGTGGGAACCTTCTCGCACTTGGACCCAGACCATGGTTTCGTTGGGTATTCAGAAGACCTTCTCTATAACAACACCCTGCCGGACTACACGCCCGGGGAGTCCTTTTTCACTGTGTTTGGGGTTTTCTTTCCCGCAGCCACAGGTGTGATGGCCGGCTTCAACATGAGCTCAGACCTCCAGAAGCCAGACTCCAACATCCCAGTGGGGACGCTGGCTGCGGTCGGCACCTCGTGGTTCCTGTATTTAGTCTTTGTCTTTCTGCTGGGAGCCATTTGCACAAGGGAGGCGCTACGCTATGATTTCTTGATAGCAGAAAAGgtTTCACTGGTGGGGTTCCTGTTTTTGCTTGGGCTCTACATTTCCTCCCTAGCGTCCTGTATGGGTGGTCTGTACGGAGCACCCAGAATCCTTCAGTGCATCGCTCAGGAAAAGGTTATACCACTCCTTGGATTCTTAGGGCAAGGGAGAGGTCCAAATAAAACCCCAGTGGCAGCGATCTGTTTGACCAGCCTCATCACCATGGCCTTCGTCTTCATAGGCCAAGTGAACATCTTGGCCCCCATTGTCACCATCAACTTCATGCTCACGTACAGCATCATAGACTACTCCTATTTCTGTGTCGCCATGAGTTATGACCTGCAGATGAAGCGAGAGAGCCGCTGCCCGGGGGAGGATTCCTCCCCGAATGCCGGTAAACCTTTAATCCTTGCCAGGCATCCCGGATATGGAACTGAAGGCATCGCGGAGGGCCAGGGAAACGGGACCTTACTGGAGTTCACCAAGGACATGGACCAGATCTTTCACTCGCCCAACCCAGAGATGGCGCATCGCGAGccagaggaggaggacagcACTTTGGGCCACAAAGGCAAAGGCAGGAAGTCCAGAAAGGCGGCCAAGCAAATGCTGATGGATAGCTTTCGGTTGCAGTTGAATGGGAGCTCGGAGAGAGAATACACCGAGACCCCAGGCACAGACGTGTCGGATGATGGTGTAGCTACTAATGCGACACTTAATCTTCTTGAGGGACAGGGCTTAACGGGAGAGAGTTGCACAAGTCAGGGTCCACAGCTGGTGCGAGACGATGACCAGCCCAGTTTGGAAAAAGAGACATCTTCTCTTCAGCGACTGACTTCCATAGAACTCCTTGAAGCAGATTCAATGGTGAAGCAAAAACTTCAGAGACTGGAAATCCAACAAATGCCAGCATCGGTTTACTCCGCTTTCTGCAACCACTGGGTTTCCTTAATTGGTgCCATAGCTTCTGTTGGGATTATGTTTGAAATACAATGGGTCTACGCCTTCGTCAACATCGGTATGGCCACGATTCTCTACTTCTACATTGGGCAAGCGAGTCCAGGTCTGCCAACAGGAGCAGCTGCAAATTTCAGCTTTTTCAAATGGATCAAAACGTCTCTGAAGACCATGGGCAGGAGGGGGGCTGCGCTGCAGGATCAGATTGTTGTGACACCCTCTTTCGCCGGCGTTGGCATGGAGACCCAACAGCTGACGGAGGAGAATGCAGACTTCGCCTCACGAGACCGATACCACCATTCTTCCATCATCAGCGGAGAAGAATTAACTCGCCAGCTCAAATGAGAAATGAGCAATACATCTGCGTTgattattttctcttaaatgGATTGTTCAACTCGAGAGCGTTGGGTTTAATGtgatttacactgtaattatactAATGGTAAACAATGGAACATTTTTAGATTGACTTTATTTGTTTGGCAAAGTGGAGATTCAGATTTGATCACGTTTAACATTCCAACAAGAACAGACCAACTGTGCCAGAGCATGTCTTGCTTGGACATGTACCTCTGCCCCTGTGGTTCAAGTAAAACATGATGTCTATCTCTGTTTACTGTTGTGTtccttaaaatacaattcataataactcaaatcacagaatttgaaaattatctttatttattgaattgagaTGAAGCTGAATATTCAAGAATCCTCCATCCTCTTGAGGAAAGGGCACAGATTTTCTCGCTCAAGAAGTGTTTTGAAGTTGTTGAAAGCAGG

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K14428 SLC12A8, CCC9; solute carrier family 12 (potassium/chloride transporters), member 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000827 True 2937 mRNA 0.50 14 4728576 4751344

Neighbor

gene id symbol gene type direction distance location
AMCG00000828 NA coding upstream 8029 4710631 ~ 4720547 (+)
AMCG00000830 NA coding upstream 19955 4708098 ~ 4708621 (+)
AMCG00000829 snx4,LOC107660619,LOC107741918,LOC107555933,LOC107673751,LOC107714137 coding upstream 25311 4684695 ~ 4703265 (+)
AMCG00000822 LOC106574436,LOC106575256 coding upstream 61160 4651982 ~ 4667416 (+)
AMCG00000823 LOC104959882 coding upstream 85797 4636292 ~ 4642779 (+)
AMCG00000826 NA coding downstream 1523 4752867 ~ 4772009 (+)
AMCG00000833 LOC106586391,LOC106582337 coding downstream 40765 4792109 ~ 4804342 (+)
AMCG00000834 itgb5,LOC106582337 coding downstream 67861 4819205 ~ 4823894 (+)
AMCG00000831 tnfaip6 coding downstream 82013 4833357 ~ 4838880 (+)
AMCG00000832 NA coding downstream 92748 4844092 ~ 4863848 (+)
G126368 NA non-coding upstream 483540 4244732 ~ 4245036 (+)
G126301 NA non-coding upstream 998520 3725920 ~ 3730056 (+)
G126248 NA non-coding upstream 1055400 3670802 ~ 3673176 (+)
G126240 NA non-coding upstream 1071995 3652673 ~ 3656581 (+)
G126215 NA non-coding upstream 1170152 3555566 ~ 3558424 (+)
G126500 neb,LOC106518889,LOC106951376,LOC103134835 non-coding downstream 125523 4876867 ~ 4880503 (+)
G126568 NA non-coding downstream 369701 5121045 ~ 5124330 (+)
G126569 NA non-coding downstream 375215 5126559 ~ 5126808 (+)
G126570 NA non-coding downstream 375970 5127314 ~ 5127656 (+)
G126572 sec22a non-coding downstream 377163 5128507 ~ 5130661 (+)
AMCG00000734 NA other upstream 2914419 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 3030003 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 3122545 1599696 ~ 1606031 (+)
G125561 NA other upstream 4324985 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 709957 5461301 ~ 5465981 (+)
G127134 NA other downstream 3865855 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 5348939 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 7248320 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 7537606 12288950 ~ 12385042 (+)

Expression


Co-expression Network