AMCG00000828


Basic Information

Item Value
gene id AMCG00000828
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4710631 ~ 4720547 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000828
CTTGCAAGAATTAAAGtggtgttttatttgattacagtgaagatgatgatgaggatTCTTAGAACATAAAGTTTtaaatcgagaggaggccattcaccccgtcgtgctcgtttggtgtctattaattaagtgatccaaggatcctatccagtctgtttttgaatgtccccaaattgtctcttcagccacatcgctggggcgtttgttcagattgtgacgcctctctgtgtgaagaagtgtctcctgttttctgtcttgaatgccttgcagcccaatttccatttgtgtccccgggtgtgtgtgtccctgcagatctggaaataTTCCTCTTATTTAATTTAGCTCATGTCCAGGACAACTCACATTCAATAGTGAATTAAAAACTGTACAGTGCTGAGATgcatattataaacaaaaatgcaaagtataaaaaaaaagcaaagagtTTTAGAGAGAAACACAATACTGTGCCAGATACAGCAATATAACTAGTGAAGTGcctgaatataaaacaattataacttTTTAAGATGCATGTTATTTTATCATTACTGATAGAATTTCTCATGTGGGttgttaaaaacattacatggaCTCTATGGAATAGAAAATGGGCAGTGTGTTATAATTGGGCTTCATTGTGCACTTTAGGAATATCGTTAATCAGTAATACCAGTCCCATAACAATCGTTAAATGGAACTGCGTGgaatttgaacatttaaatggGCTTTCTCATAAATTTAGAAGCCAAACAATGACACCAACAAATAAACTGAGTGTTACTGTAGCTGACAGGTTATTGTATAAAAACATGACTGCACAGATGCTTATGTTAATCAGAGACAGTGGCATAGCTTGACTAGTTTCCAGGGGaggcataattaaaaaaataactgatttcaGTGATCAGGTTTGAGATGCATAAGTgatgttatgtgacagtaagtATGTTAGtagctggggacaataaaagcaGGATTGTTAGTCTCCCTGATAGTATAAGTATATGTATGTTGGAAGCAGTGAGAATACAGCAGTATGTATGTAACAGTACTACACTttactacagtatattacactacactCTACAACACTGCACGAGCACATTGCAACACTTTACTACACTACATTGTGTAAAAGCACAGCAATAactgcactacagtatattacattaCACTGATGTTTCTAACAGTACAGTACTGCGAACAGCTGAACTGATCATATAGTGGTAACGTACCCAAGTAAGTCTTTTTATgtagggtgatcagtgccaaaattaagatgcatGCATTCATAATCGCGTGCATCTTTATTTTGGCACTTATCACCTTCATATCATTTTACCCACATCATAGGCAAATATGAGCCCAACATAGAAAGCACAGTCAAAGTGTTGTACAGGATGGCCAGAAAGTGCCATACAGATACAATAAAATGCCATATGGTTGTAAATAGTATCATTCACCCCTAACAAGATGTTAAACAAGACCAAAAGAAATGCCATATGGGAGTAAAAAGTCATGCCCGTCCACAAATGTCATACAGGACCTGCTTATTTTAGCACCACactggtctgtgtgtatgtgttagtCAGTGTATCCTGGCTTcattgcaaattacattttaagttttaatccgcaaaaaacattacttttggATGAtatcatgaaataaaaaaaataagaactaaCAGCCGATTGTGTACGAGGTAGAATCACTaagttttctctttctcctaAAACAACAGTGACTTGGTTGAgctgttttgactgcagtggcAACTCGCAATAGAACTGGTCCAGGGGTGAACGAGGCATGATTATGATTTAGCAATGTGGTCACGCAGAACACAAGGGCGATGTgaacataatataatacatgCCATTTAAGCTTGAGGTTTTCATATTGCATTGTGCAGTCACTCTGTGGTCGCTGGTGTACATGACTGCTCTTTGTCCCGATATCTTCACTAAACTGAGTCTGCACACAAAGTTCTGCTGACTGAGTTTCCTTACAGAAATAGGTCAGAAGTAGTAGAAGTAGTGTATATGGTTATGCATACCAAGGGAATGTGCCACCTTCTTCTTAAAGAACAAATggtaataaatgaataatgttgGATAGTATCGGGTACAAAACCAAAAGGAACATATTTCATATAAACTAAAACACTTTTCAGTTTCATATGTGTAGGGCAATCACTATGTTAGGAGTAGGTGATTGTCTAAATCAGATAAAAGGAGAAGAAGATGATCTATGCAAGATAAGTTCTAgcacaagcaaaaaaaaagcacctCCTGTACAGGCAGTCAGTGTCACAAAAGTGTCACAGAGGACAATGTCATTTCAAAAGTATTTCTGCCTAATCTGTGGCCCATTTGAACTATATAGTAATTATACCTGCGTATCATGTCACCACTTTCCTTCAGAAAATGACCCAGGTCAGAAGTGCAACTGTGTCAGACTCCAGCTCAGCTCAATGCATCCCCTTTCCCGTTGCAGAAAGCAGACGAAACCGAAGGGAGGGGCTGTGTTGCACATTTGCACAGAAAAcccagcaaaaaaaacaaaataaaaataaataaagccaccgcagcagcagcacacagtCTACACTGCACTTCCATCCGAGAAGTTCAcctcccacaatgcaccgcgGGCAGGGCGCTCCGGAGCTGGAATGCTGTTGCTGTCACAGGGAGCCTCGGCGGAGAAACTTTTGCAGCCACAACATGACTCCGAGACGGCGCTGATCGCCCCGGCGAGACCCTGGTCCTGAACTGCAGAGTGCTGTTTTTGAGGATGAACCTCGACGAGAAGCTGGAAGGCATCCTTCTGAAATGCAGCAGCGTGGCGGGCATGCAGGCGTCCCGGGGGCTTGGTGCTCCGGAGGCGGCGGAGGTGGAGCACGGCGCGGGGTTGGGGCCGGCCCTGGGCGACCGGGGCATGACGCACGACGACCTACTGGTcgacgaggacgaggacgatGACGAGCACCTGCAGGCCGGCCGGCTCCCGCAGCACGAGCTCATCCCGCACCACGACGAGCTCATGGTCCACGAGGAGACGGTGAAGAACGATGAGGAGGAGCACGAGATGCACGAACGGCTCTCCCACGAACTGCACTACGCCATGCACTTGCCCGTAAGCGtcaaacaggaaataaagcTGGCAGAGGAAGCGATGCAGctgaaaaaggagaagaagCAGGCGAGAGAAATGGCTGATTgtcagaaaaagaagaaaagaaagcagcGTTCTCCTGCTAAGATTCTTACCATTAATGAAGATGGTTCTCTGGGACTTAAGAGCCCCAAGTCCCATGTTTGCGAGCACTGCAACGCTGCCTTTCGAACCAACTACCATTTACAGAGACATGTCTTCATCCATACAGGTGAAAAGCCATTTCAGTGCAGCCAGTGCGATATGCGTTTCATCCAGAAGACCGATCGTGTGCTCAAACACAAGCGGATGTGCCACGAGAACCGGGACAGGAAGGCAATCAAAGCTGCGGCTAAAGCTGGTCTGCTAGGAAGCGAGGAAGAGTTAGGCTTCTCCTTGCCTCCAAAGGAAAGTTCCCTGCCAAAGAAGAAGCGACAGAAGACTGGTGACAAGTCGAGGACGTCGGCGACGCTTCCGGAGAAAGACCTGCACAGCGAGGAGAAGCTGGAACCGAAGGCCGGTAAGAACGACTACCTGCCTCTGTACGCGATTGCTTCCAAAGTGAAAGACGAATACATGGTGGCGGAGTACTCTGTAGAGCTGCCTCACTCGTCCCTCGGTGGCAGGCACTTGGGTGAGTCGTCCTCGGAGGAGATGAACCCGACCAAATTAGTCCTGAAGAAAGTCCCCAGCAAGAGGAGCCAGAAGCAACCTCTGGAGCAAAGCCAGAACATGGCCGCCTTGTCTTCGTTCGAGGATGGAAAAGTCGCCAAGTACACTTTCGAGCTCGTGGACAAGCAAAGCCTTCTAGACACGGAGAGTAACACGGACATGGACCAGGTAGACGCCCTTCAGGAGGGCCCAAGCAAACCAGTCGCCAGCAGTACGAACTATGACGACGCCATGCAGTTCTTAAAGAAGAAAAGGTACCTGCAGGCGGCGGCCAATAACAGTAGGGATTATGCCCTCAACGTGGGCACCATAGCCTCCCAGCCCTCCGTCACTCAGGCAGCCGTGGCCAGCGTCATCGACGAGAGTGCCACTGCCTCCATCCTGGACGCTCAGACCTTAAACGTtgagattaaatcaaaccaCGACAAGAATGTTATTCCTGACGAGGTCCTTCAAACCTTGCTGGATCACTATTCCAACAAGGCCAATGGCCAGCCCGAGATATCCTTCAGTGTGACCGACACGGAGGTGACCTCGAGCATATCCATCAACTCCTCGGACGTCTCCGAGGTGAGCCAGGCGGAGACGATCGGGCCGAACTCCCAGGCCCCCTCGACGGAGAAAGCCAGCATGCTCCAGGAATACTCCAAGTTCCTTCAGCAAGCCTTGGAGAGAACCAGCCAGAATGATGCCTATTTAAACAACCAGAGCCTTACCTTTGTGACCGAGAGTCAGAGTCTTTCCAACCAGCCTTTGTTTTCCACCATGGATAAACCGTACGCTTTGACGAACCGCTTCCGGTCGGGGATGAACTCTCCTCTGAGGTCCTCCTCGGAGAAATCCCACTTCGGGCTCATCGTCGGAGACTCGCAGCACTCATTCTCGTTCTCGGGGGATGAGACGAATCATTCTTCGGTCTCCCCTGCGGAAGACTTCCTCGAGCAGGTAACGTCATCGAAGAAAAGCGATTCCCAGGCGATCCACCAGGCCTTTCAGATTGGCACCTTCGAGCAGAATTTCCGGTCCCAGTTCGGGAGCTCTCGGTCTGGAATCTCTTCCCAGTTCAATACTGCCAATGGACAAGTGAGTCTCCGTGGACCTGGGTCCAGCACAGACTTCGCAGAGTTCTCTCTGGTTAACGTCACAGAGAGTAGACCACAAATGTCTTCTTCACCAGATGCCACAACCAGCCAAACCTTTGGCTga

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K24370 ZNF148; zinc finger protein 148

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000828 True 5041 mRNA 0.47 6 4710631 4720547

Neighbor

gene id symbol gene type direction distance location
AMCG00000830 NA coding upstream 2010 4708098 ~ 4708621 (+)
AMCG00000829 snx4,LOC107660619,LOC107741918,LOC107555933,LOC107673751,LOC107714137 coding upstream 7366 4684695 ~ 4703265 (+)
AMCG00000822 LOC106574436,LOC106575256 coding upstream 43215 4651982 ~ 4667416 (+)
AMCG00000823 LOC104959882 coding upstream 67852 4636292 ~ 4642779 (+)
AMCG00000819 NA coding upstream 311572 4398586 ~ 4399059 (+)
AMCG00000827 NA coding downstream 8029 4728576 ~ 4751344 (+)
AMCG00000826 NA coding downstream 32320 4752867 ~ 4772009 (+)
AMCG00000833 LOC106586391,LOC106582337 coding downstream 71562 4792109 ~ 4804342 (+)
AMCG00000834 itgb5,LOC106582337 coding downstream 98658 4819205 ~ 4823894 (+)
AMCG00000831 tnfaip6 coding downstream 112810 4833357 ~ 4838880 (+)
G126368 NA non-coding upstream 465595 4244732 ~ 4245036 (+)
G126301 NA non-coding upstream 980575 3725920 ~ 3730056 (+)
G126248 NA non-coding upstream 1037455 3670802 ~ 3673176 (+)
G126240 NA non-coding upstream 1054050 3652673 ~ 3656581 (+)
G126215 NA non-coding upstream 1152207 3555566 ~ 3558424 (+)
G126500 neb,LOC106518889,LOC106951376,LOC103134835 non-coding downstream 156320 4876867 ~ 4880503 (+)
G126568 NA non-coding downstream 400498 5121045 ~ 5124330 (+)
G126569 NA non-coding downstream 406012 5126559 ~ 5126808 (+)
G126570 NA non-coding downstream 406767 5127314 ~ 5127656 (+)
G126572 sec22a non-coding downstream 407960 5128507 ~ 5130661 (+)
AMCG00000734 NA other upstream 2896474 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 3012058 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 3104600 1599696 ~ 1606031 (+)
G125561 NA other upstream 4307040 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 740754 5461301 ~ 5465981 (+)
G127134 NA other downstream 3896652 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 5379736 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 7279117 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 7568403 12288950 ~ 12385042 (+)

Expression


Co-expression Network