AMCG00000831 (tnfaip6)


Basic Information

Item Value
gene id AMCG00000831
gene name tnfaip6
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4833357 ~ 4838880 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000831
ATGCTAGTGTTCAAACTCATCTGGGCCATTTGTTTCCTCTTGGAAGAAACACACGAATGGGGTTACAAGGATGGAATACTACACAACTCAATTTGGCTGGAGCAAGCAGCCGGAGTTTACCACAGGGAATCACGCAAAGGGAAGTATCAGCTGAATTACAAAGAAGCCAAGGCGGTGTGCAAGTACGAAGGGGGACAGTTGGCCACTTACAACCAGCTGGAAGCGGCCCGCAAAATAGGTTTCCACGTGTGTGCGGCCGGGTGGTTTGATAAAGGCAGAGTGGGGTATCCCATTGTGAAAGCTGGGAGCAACTGTGGATTCGGGAGAGTGGGAATCATTGACTACGGCTACCGGCTCAACAAGAGCGAGAAGTGGGATGTCTATTGCTACAACCCTACCGCCAAGGAATGTGGCGGCATCCTGACCGAGCAGAAGCGGGTCATACAGTCTCCAGGCTACCCAGATGAATATGAAGACAAGCAGATATGCTACTGGCACATCAGGGTTCGCTACGGCCAGAAAATCATGCTGAAGTTCCTCGATTTTGATTTGGAGGATGACACTTCCTGTCTGGCGGACTATCTAGAAATCTACGACAGCTATGATGATGTATCTGGTTTAACAGGAAGATTCTGTGGAGATGAATTACCAGAAGACTTCATTAGCACAggaaATGTTATGACTTTAAAATTTCTGACTGATTCATCTGTGACGGCTGGTGGATTCAAAATTGAATATAATGCGATAGATCCTCCCTTCAGTAACAGCTCCTATAGCGAAACCACAGGCTTGCTGACAAATGAC

Function

symbol description
tnfaip6 Predicted to enable hyaluronic acid binding activity. Predicted to be involved in negative regulation of inflammatory response. Predicted to act upstream of or within cell adhesion. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in corneal neovascularization. Orthologous to human TNFAIP6 (TNF alpha induced protein 6).

NR:

description
PREDICTED: tumor necrosis factor-inducible gene 6 protein

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005540 hyaluronic acid binding molecular_function

KEGG:

id description
K19018 TNFAIP6, TSG6; tumor necrosis factor-inducible gene 6 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000831 True 804 mRNA 0.48 6 4833357 4838880

Neighbor

gene id symbol gene type direction distance location
AMCG00000834 itgb5,LOC106582337 coding upstream 9463 4819205 ~ 4823894 (+)
AMCG00000833 LOC106586391,LOC106582337 coding upstream 29015 4792109 ~ 4804342 (+)
AMCG00000826 NA coding upstream 61348 4752867 ~ 4772009 (+)
AMCG00000827 NA coding upstream 82013 4728576 ~ 4751344 (+)
AMCG00000828 NA coding upstream 112810 4710631 ~ 4720547 (+)
AMCG00000832 NA coding downstream 5212 4844092 ~ 4863848 (+)
AMCG00000837 LOC107580446 coding downstream 186415 5025295 ~ 5034697 (+)
AMCG00000840 LOC107714401,LOC107596066,LOC107661140,LOC107555914,LOC107741932,LOC107660638 coding downstream 201068 5039948 ~ 5048084 (+)
AMCG00000841 adcy5,LOC107555914,LOC107660638,LOC107661140 coding downstream 242976 5081856 ~ 5115984 (+)
AMCG00000844 NA coding downstream 383117 5221997 ~ 5265705 (+)
G126368 NA non-coding upstream 588321 4244732 ~ 4245036 (+)
G126301 NA non-coding upstream 1103301 3725920 ~ 3730056 (+)
G126248 NA non-coding upstream 1160181 3670802 ~ 3673176 (+)
G126240 NA non-coding upstream 1176776 3652673 ~ 3656581 (+)
G126215 NA non-coding upstream 1274933 3555566 ~ 3558424 (+)
G126500 neb,LOC106518889,LOC106951376,LOC103134835 non-coding downstream 37987 4876867 ~ 4880503 (+)
G126568 NA non-coding downstream 282165 5121045 ~ 5124330 (+)
G126569 NA non-coding downstream 287679 5126559 ~ 5126808 (+)
G126570 NA non-coding downstream 288434 5127314 ~ 5127656 (+)
G126572 sec22a non-coding downstream 289627 5128507 ~ 5130661 (+)
AMCG00000734 NA other upstream 3019200 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 3134784 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 3227326 1599696 ~ 1606031 (+)
G125561 NA other upstream 4429766 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 622421 5461301 ~ 5465981 (+)
G127134 NA other downstream 3778319 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 5261403 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 7160784 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 7450070 12288950 ~ 12385042 (+)

Expression


Co-expression Network