AMCG00000832


Basic Information

Item Value
gene id AMCG00000832
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4844092 ~ 4863848 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000832
GTGGGGTGAAAGGTCAGCAGCATTTCGACGTGCGCTGTTTAGTTTGGCGCCAGCGTTTTCGCGGGGATACCAGGCGAGAAAGTCTGGGAAGGTGCACCTACcgaaaagatatatattttgtattcacaaaCGGATTGTAGCCGTTAATGGTCTCTTTTCTATTGCGTGGTGAGATTACGCCAGTTTTACCGAGTTCACAGGCCGCAGGGTGTGAGGATGATGGCTACGGTCCACGCCACAAGCTCCAGCCTCCTTCCTCTCCTCGAGTCCCTGGAGGACTCCTCGGTGTGTCTCACAGAGCAGACGGATGCTTACCTGACCATTGCTAAccGTATAAGCGGAGAAGATGGAAGACAGTTTATTCCTGCAGTTGTAAAGCACTTTTCAAGGCTTGGTAAAGTTTTTAAGGCGCACATTTCAAGTCCGAATTCGGATCTCAGTCAAGCAGCACTTCAGGCCTTGGGCTTCTGCGTTTTCCACAGCAGTATTGTTTCTGCGTTGCCAGcaaGCTATGTGGAGGAACTGCTTTCGGCTCTTAACTCCATTGCTATCAAATCCActgataaaaacacatgcacaaggGCACTTTGGGTGATTTCTAAACAAAACTTTCCACCTGAAGTAATTGCAAGAAAGGTACCGGATATCCTGAAAACATTAGAAACCATGCATGCCAGGGAAGATGTACAGTCTGTGGTAATGGAACATGAAGCACTCAATGTTATAATAAGGTTGTTGGAGCAGGCGCCCGCTCAGATGGGGGAAGGAGCGGTCCGGTGGGCCAAGCTGGTGATCCCCCTAGTGGTCCATTCGGCCTCCAAGGTCCGTCTGCGGGCCGCTGCCGCCCTGGAGATGGGCGTGCCTCTGCTCATCGAGAAGCAACAGGAGGTGGCTGCCGTCACGGAGCCCTTGATGGCCACGAAGCTGATACCAGAGCTGCAGAAACTGTTTTCGACCAAGAATGAGACCAATGTGCTGAAACTCTGGCCCCTGTTTGTGAAGCTGTTGGGAAAGTCCCTTCACCGCGGAGGACCCTTCATCAACTCCCTCCTGCACTTAGAAGAGCTGGGTTTCCGCAGCAGCTCCCCGGTCGTCAAGAAAATCGCCTTCATCGCCTGGAAGAGTTTGATTGACAACTTCGCTTTGAATCCGGACATCCTGTGCAGCGCTAAGCGTCTGAAACTGTTGATGCAGCCCCTCAGCTCTATCCAAGTGAGGACCGAGTCTCTGACCCTCACAAAACTGGAAGTGTGGTGGTACCTGGTAGTGAAACTGGGGCCACACCTTGCAACTAACTTTGAACAGGTGGGGATTCCTTTGGTCCAGAGCACGATCAGTGCTGAGCCTGCGGTGCCACCAGCCACACCGGCCAGAACCACCTCAAACCTGAACAACAGTGTGGGCCCGACTACCCCGAAAACAGGTCCGCACAGCTTCTCCAGCCCCGCCTCCACCCCCCGCATGACGCTGAACAGCAGTGTTCACCTCTTGCCCGCCTATCCCTCGATTCAGATGCTGGGCCTGGAGATGCTTCTGCATTTCCTCGTCGGCCCGGAGATCGGCGCGGTGGCCGCACCGCACAAACTGCACATCAACCTGGAGCCTCTCTTGCATCCCCTGCTCCCCAGCCCCTCTTTTTTCACCAAGCACTCTGCCGTGCTGATCAGTGCAGTGAGAGACGGCTTTATTGCGATCGGCAAAGAAGCTCCAGATGCTTTGCTCACTCTTATCTGGAAGAATTTGATTGGCCTGGTGACGGGGGCAATAGAGACGGCGGGTAACAAGAAGGAGAGGCAGGGCTCGGAGGTGTTGACCCTCCTGATGCAGGCCTTGCAGTCTATCATCAACTCGGAAGCACTTCCAGCTCAGCGGGCGTTGGGTCTTCTGGAAGCCACGGTGAAAGGAATACCACAGAAGATATTGGGGTCTCCTGCCTACCAGGTAGCCAATatggatgttttaaatGGCACGCCGGCACTTTTCTTGATTCTCTTGTTCCATCACAATAGCCTGCTGGAAGCCTTTTTAACGGACGAGAGGTTTTTCCTTTCCATGGAGACCCTGGTCAGCTGTGGTCTCTCCGGCCCCACATCCCCACTGGCCTTCAGCGAGTCAGTACTGAACGTCATCCACCAAAGTGCTAACCTGGTGCCGAACAAAGAGCATCTCTGGAGGATGTGGAGCATCGTAGTCAACCCTCTGACTGAAAGTATCACACAAACCAATGAAGTGAACCAAGGGGATGCTTTGGAGCACAATTTCACTGCAGTCCACAGTGCCCTGATGTTGCCCATTACACACCTCCTCACGGTCAATGGATTCCCACATGTGACTATGAAAGCCCTGCTGCGGACGTGGTCCGAGCTCTACAGGACCTTCGCTCGCTGCTCTGCTCTGGTGGCCACTGTGGAGGAGAATGTGTGCTGTGAAGAGCTGTGCACCAAGATGGTGTTGGGCCTGGGCCAGGAGGCTCTTTCAAATATGTCTACATTGGAAGCAGTTGCTAACATTCTCATGGTCATTATTGAGTGTGTTGACTTCTCCCCTTACACACCCAAgtttcaacagaaaaacaaatCACCGCACACACCCCTGAGCTGGACGCGGAAGAAAAACAAGGCCCTGGGAAATATGACCACCTTTCTGAAGCTCCTAGCACAGTCTGTAGAGGCTTTTCACTCCCAGGAATCTCCCGAGACCAAATCAGACGCCCCTTCAAATTCGATGCTTGCAGTTGGCAGCGTCCTTATCGGTGTCATGTCCACGTTATTTAGCAACCTGTCTCTGTGTACTGCCATCCAAGAGGCCCTCTCCTCCCTGGTGGCTCCTCTCACGGTCTTCTATGACAAGATGTCCAAgcCTCAGAATGAAGTGCCAAAGTTCTACACCAGTCTGTCACACAagCTGGAGAAGTTACTGGGGGAGATCCTGACCTGCCTACAGACGCGCTATTCCATGGCCTATGACGATGAGTTGCTGGCGCAGCTTGCACCCCTGCTGGCTGTGCTGTTCCTTCACAAGAACAAGCAGGTTCGCAACCTGGTGGCCCAATTCTGGAACGTGACGTTCTCGAAGGCTCCCACTCTGACCTACCCACAGCAGCTCAAGGTGGTGTTGAGCCAGGTGAAACAGAAGATCCCAATTATCCTGCCCGGCTTTGAAGCGGTGATCGTACCTGATGATTATAATGGACCATACTCGGATGCTAGTGAATGTTCCCAACTGGAAACAAAACTCAGCGGGGTTGAAGTGAAATCTCTCGGAAAACGGGATTCTTTGCTTGCCAGAGCCGACGAGTTAAAGGAAAGGAATTCTACAACCAAACCTGTCGCTGTGAAGCTGGACTTCGGTTCTGCTAAACTCCCTCCCAGAGAAGTCCTGTTAGAAGAGGAGAAGTCTGTGGATTTCGTATTTATTCCCCCTGAGACAAAGCAGCGGGTCCTCACTGAGCACCAGAAAGAAGTCCTGAGGACGAAAAGGGTTGATATTCCAGCCATGTACAACAATCTCGACGCCTCTCAGGACACAACTCTGTTCACTCAATACAGTCAGAGCCAGGATGACTCTATGGAAAAATCATCTTCAGAGAAGAAGGCAGAGGAACCTGCAAAACCAGTGGTCAGTTCTGAGCTTCCCGAggaaaaaatggaaatggaagaaGCCCCTGAAGTGCACGAGTTGAACACTGAGGTGAATGAGGAGAAAGCGGACCGAACTGCAACTTCTGAAATGGACACAGCTGAGGAACTGCTGTCGAAATCTGTGGACGTTTCCCTGGAAGCAAGCAAAGCAGGAGAGGATGCAACCATGGAAACGGAGGAGACCAGTGCCAATATCAGCAACGCCTCGGCCTCTTCCGACATAGTGTCGGGGACGCCCCAGAAAACCTCCAGCCGTCGGCAGTCATTCATCACTCTGGAGAAATTCAGTTCAGAGGGAAGGACGTCCAGTCCTGTGAGCGTCGGGAAGTTTTCGGGTTCAGTTACCAGGGGCTTAAAGTCTGGAAGCCAGGAGGTCGTTGAGACTGTAACAAAAGTGTTTTCCCCACAGCAGAGCCCCACTGCCGAGGTGGAGAAGGAGGCTTCTGCCGAGACGCCAGTGTCTAGACGTGGGCGCCGGAAAAACAGCAAACTCGATTCTTCAAAACCCGAGAAGAGTGTGGAAGACGAGACAGAAAAGCAGCCAGCGAAGCCGGAAGTGGAGGAACCAGAAGTCCATCAAAGTAATGTTACTGTAGAAGAAGATGAGGAAGACTGTATCCCCGACACACAGTCTCAGCTGGTAATGCCTGATGCAGAGGGTTCAGCGGtagaagagcaggagaaaacGAAGATGTCGCCAAAAGATGAAAGCCCATCTGCCGAGTCCAAGGAGAACACCCCTCCAGAAGAAGAGTCTGATGACCAGCAGGGCGAGTCCCAATCCTCTCAGAGCCAGTCCAGCCAGAGCGAACCCCGACGCTCCTCAAGACGTCGAAGCAAGCCCTTACGCCCAGGGGAGTCTGCAGAGAGCCCCGACAGCGTTGCTAAGGCCAAGCAGAAGAAGATAATTTCGAAGGGCAAGGAAGATGGCTCTGTGGAGAAGAAGGCTTCCGAGACTGAAGTACACCAAGCTGAGGAGCAGAAGGCCTCTTCCCCGGCTGCCAGTCAAACCGAAGCTCAGTCACAGGGCCAGAGTGCCAAGAGGAAATCCGCTGCATTGGATGTACAGGAGCGGGTGACAAGGAGTGCGACTTCGGCCGCTGCGGTTGAGGCAGAAGCTTCACAAACCGATGACTCCCAGGCAGGGGCTAAAGACGCCTCTCAAGGTCGGGCCAGGTATCGGACGAGGCGGTCCTCCCAAGGTTTACTGTCCAGCATAGAAAATTCAGAGTCAGACGGTTCTGAGACCCGTGAAGAAAACCAGAAGGTGAGAAAGAATGCGAAAAAGAGAAAGCACAACAAACTTGTGAGCGAGAGCCCTCCCTCGGATGAACCGGCTGCGGAGAGTTCAGCGCAGGTCCAACCCATGGAAATGGACAGCGAGGTTGAAAAGGAAAATGCGGACCTTTTACCAGTTCCCGAGCCCGAAAAGGCAACGGATGCCAGCACAGTCACAGAGCCTTCAGGCCACCTTGATGCGGGCGAGACTTTGAAGTATGAGGAGGCTTCAGTAGAACAGGACGATAAAACGCTCGTCTTGACTAAGGCTCCCGAGACCGAACGTACGATGGAGGAAAAAGATCCCCTCGAAAATGCCGCTTCTGCAATGGCGGGGAGCGTCAGCACTAAGACTGTGGTTGAGGATTCTTCTACAGAGGTCTCTGATAGCAGTCAAACCACGGGGAAGATCCACCATTTGCACATGTGTCCTCACAGCAAGCGTGGCCGTGGGCGCAGGCGGTTCAAGGGCTGCAACTGCAGGGCAATGGCAGCCCAGCAGCAAGAGAATGACCTTTCTGATTCACAAGCTTCAGAAAAGCAAGAGCTAGATTTGTTGGGAGAAAAAGTCTCTATGGACCATAAAAATCTTGTTTCTGAAACTCCCTCAATGGTCCTTGACTGTAATGATGCGTTGGTTGGGCAAAACACAGTTAGCAATGATGATAGTGTGTTTGAACCAGATGAAGTTAGCACCCCTACGCTGCCAAATGGTCCAGTCCTGTTTACTCCTTCTGTAAGCACTCTGAGTTCAGTGGGCGAATCGGAAGAGGAGTCCGATTCGCACACATTAGTGCAAGTGCAGGAAGAAACGGAGTTGGAAACCGTTGACCTCGGGAAACCTGAAAGCTGCGAGCTGGCTGCGGTTTCAGAAGAGGAGACCGCTGAAAACCACGTGGTCGACATGGATGAGGACAAACTACAGTCTGAAAATGACCTGGAGGAAGAAAGGTCTCCTGAGCCGAGGGAGGAACACCAGCTGGGTTCCCAGGAGAAGGATGGTGGTCAGCAGACTGAACAACATCTGGAGCAGGCAGTGATCGAGGACATTGCAGTATTGAAAGAGCAAGACCAACCAGATGAGCTTGTAGAAGAGCCGTTGGAAGCAAACCAGGTCGAAGCTGTTGAAGCCCCACTAACTGATGCAGATGAAGCCCTGCTAACCGATGCTATGCTTGCTGAGGTTCTGCCCGAGGAGTCCCCTGTATCTGAACAGACCACTGTAGGAGGCACGTGTTTGGACTCGCCCCCCAAACGAAAGGATTTGGATGCTGCTGTCGGACTGGAGGTGGGTCAGAGCCCCAGCAGCTCAAAGCCACGTGGGGTTTGGTCTCCAACAGCTTCTCCTTCCACGAGCATCCTCAAGAAAGGGCAGAAGAGGTCCCTGGAGGATGACACACCTTCCCCTCTGCAGAAGGCTCGGCGCGTGTCCTTCGCCAACCCCATCCATCAGCACGAGCTGGCTGACGACATCGATCGCCGCAGCCCCGTCGTCCGGCCCTCGTCCAACAGCTCCCCGAGATCCAAGAACAACACCGTGGCGTTGTCCTCTGCGACACAGCAGAAGTTCATTACAACTCCAACAAAGGGCCTATTGAGCCTCAGCCCTCGCAACCTCCGCAGCCCAGGATTCAGGAGCTCCAAGAAATGCCTGATATCAGAAATGAGTAAAGAACCGAAGCCGATCCCCAAGGATTGCGTCTATCCTGCTTTGGTCAGTTGTTCGGCTCCTGTGGAGGCTGTCCTGCCACAGCTGACTTCTAATATGTGGCCGCGGGGTTTTGGACAGCTCGTCCGAGCCAAGAACATTAAGACGGTGGGAGATTTGAGTGCTCTCACCCCCACCGAGATCAAAACTCTCCCTATACGCTCGCCAAAGCTGTCCAACGTGAAGAAAGCCCTGAAAATCTATCACGAACAACAGAAAATGACCTCAGAGCCTGAAGAGAGGGAGACCTCACCCCTCGACAATGAGGAAGAGAAGGTCGTAGCAGATGTGGCTGAGGTGGAAAGCAAGCCCGTGGACCTTCTGTCCGAGATCCAAACGTTGAGAAGTCATTTGACCGAGGAGGAACTTGGAAGATGCTCCGGCAGCCAGCTGGTCCTGATGCACGAACAGTTGAGCGACATGATGAAGAATATCGTTGTGAACCTACAGTCGCGAGTGTCCAGCCCCCACGAGGAGAGCTCGCCTTGACCGCACGGTGACCCCTGCCCGCTGAACTGGTTTTGATCTTTGTTTGTTAGGATGCATATCCTCGGCTTGAATGGAGTTGCCCATTCCACCTCAAgagttgcattttaaaatatattaaataacaaactCTGGAATTCACTTCACTTAAGGACTTTATGGTGACTTTTGTCAAGTTCTACCCAAACCTCATTGTGTTGTATCGACATGTACCGATATGAGGGATAAGGCTTATGGACCATGGATTTTAAAGCACTCACACTGGATGTGGATAGATTGTGCAGTTTCTTTTTAGATCCTTGTCAATTAACTGCAGCATCTTTTTAAAACTACTGTACATGgtgtgttcttttttaaataaagcagtaaGTTTCTTAGTCTATTGGGTGACGGTGTGCTCCTATTCAAAATGTCTTGTGTACTTCTACATGGGATACTTCTCATGGTTAGACctgttttattttgccatttgtgGTTAAC

Function

GO: NA

KEGG:

id description
K11138 RIF1; telomere-associated protein RIF1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000832 True 7593 mRNA 0.52 36 4844092 4863848

Neighbor

gene id symbol gene type direction distance location
AMCG00000831 tnfaip6 coding upstream 5212 4833357 ~ 4838880 (+)
AMCG00000834 itgb5,LOC106582337 coding upstream 20198 4819205 ~ 4823894 (+)
AMCG00000833 LOC106586391,LOC106582337 coding upstream 39750 4792109 ~ 4804342 (+)
AMCG00000826 NA coding upstream 72083 4752867 ~ 4772009 (+)
AMCG00000827 NA coding upstream 92748 4728576 ~ 4751344 (+)
AMCG00000837 LOC107580446 coding downstream 161447 5025295 ~ 5034697 (+)
AMCG00000840 LOC107714401,LOC107596066,LOC107661140,LOC107555914,LOC107741932,LOC107660638 coding downstream 176100 5039948 ~ 5048084 (+)
AMCG00000841 adcy5,LOC107555914,LOC107660638,LOC107661140 coding downstream 218008 5081856 ~ 5115984 (+)
AMCG00000844 NA coding downstream 358149 5221997 ~ 5265705 (+)
AMCG00000845 NA coding downstream 452349 5316197 ~ 5332706 (+)
G126368 NA non-coding upstream 599056 4244732 ~ 4245036 (+)
G126301 NA non-coding upstream 1114036 3725920 ~ 3730056 (+)
G126248 NA non-coding upstream 1170916 3670802 ~ 3673176 (+)
G126240 NA non-coding upstream 1187511 3652673 ~ 3656581 (+)
G126215 NA non-coding upstream 1285668 3555566 ~ 3558424 (+)
G126500 neb,LOC106518889,LOC106951376,LOC103134835 non-coding downstream 13019 4876867 ~ 4880503 (+)
G126568 NA non-coding downstream 257197 5121045 ~ 5124330 (+)
G126569 NA non-coding downstream 262711 5126559 ~ 5126808 (+)
G126570 NA non-coding downstream 263466 5127314 ~ 5127656 (+)
G126572 sec22a non-coding downstream 264659 5128507 ~ 5130661 (+)
AMCG00000734 NA other upstream 3029935 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 3145519 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 3238061 1599696 ~ 1606031 (+)
G125561 NA other upstream 4440501 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 597453 5461301 ~ 5465981 (+)
G127134 NA other downstream 3753351 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 5236435 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 7135816 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 7425102 12288950 ~ 12385042 (+)

Expression


Co-expression Network