AMCG00000833 (LOC106586391,LOC106582337)


Basic Information

Item Value
gene id AMCG00000833
gene name LOC106586391,LOC106582337
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4792109 ~ 4804342 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000833
GGCAGCAGACATGGTGTGGTGTTGGTTGTCAgtgattttgtgatttgtgtgcAAGGTCTCAACATGTGCTCCAGTGGAAGCGCCGCCTCTTGTGAAGAGTGTCTGCTCATCCATCCGGACTGTGCCTGGTGCGCCCAGGAGgAGTTCGGGAGGGCAAGGACTATCACATCCCGGTGCGACTATAGTCCAAACTTGTTGAAGAGGGGCTGCGAGAAGCGCTTCATCGAGAGTCCAAGCAGCAAAATGACCGTGTTGAAGAACCAGCCGCTGAGTTCCAAAGGGTCGGGACCCACCCAGTATGATGTCATTCAAATAATGCCTCAAAAGATTGCCCTGAATCTGCGGCCTGGTGACCAGACCTCGTTTGAAGTGCAGGTTCGGCAGGTGGAGGACTACCCGGTGGATCTGTACTACCTGATGGACCTGTCTCTGTCCATGAAGGACGATCTGGACACTATCCGCAACCTGGGCACCAAGCTGGCGGAGGAGATGAAAAAACTCACCAGCAACTTCCGTCTGGGATTTGGCTCTTTTGTCGACAAGAACATCTCCCCGTTCTCGTACACGGCGCCCAAGTACCAAGACAACCCCTGCAATGGATACAAGCCGTTTCCAAACTGTGTTCCCTCTTTTGGTTTCCGTAATCTTCTCTCCCTGACTGACAAAGTGGACCGCTTCAACGAGGAAGTCCAGAAACAGATGGTTTCTCGAAACCGGGATGCACCTGAAGGGGGATTCGATGCAATCTTGCAGGCTGCAGTGTGTAAGGAAAAGATCGGCTGGCGGAAGGAGGCTTTCCACTTGTTGGTTTTTGCCACAGATGATGTCCCTCACCTTGCCCTGGATGGCAAACTGGGTGGACTGGTCCAGCCCCACGATGGCCAGTGCCACTTAAACGAGAAGAACGAGTACAGCGCCTCGACAAAGATGGATTATCCGTCTCTTGCACTCCTGGGAGaaaaactggcagaaaacaatATCTATCTCATCTTTGCTGTAACAAAGAGGCTGTATATTATTTACAAGAACTTTACAGCATTGATACCGGGTACTACTGTAGAAATTCTCGACAACGACTCCAAGAACATAATACAGCTGATTGTCAATTCCTATAATAACATACGCTCTAAACTGGAACTGACGGTCTGGAATCATCCGGAAGACATCTCCTTGTCTTTCACCGCCACATGCCAAGATGGCAAGCCTCTTCCGGGACTCAGGAAATGTGGGGACCTCAAAATAGGAGACACGGTATCTTTCAACGTATCCGTGGATGCCAGGACTTGCCCTGCActaaacaccaagcacaaattCACCATCAAGCCCGTGGGCTTCAAGGACACCCTGGATGTGACTGTGGACTACACCTGCACCTGTGGCTGCACCGCCGACACCGAGACCAACAGCAGCAAGTGCAGCAGCATCGGCACCTACGAGTGCGGCACCTGCAGGTGCGACCCCGGGTACCTGGGTGCCCGGTGCGAGTGCCAGGAGGGTGAGGCCAGCAACCTGTACCAGACCATGTGCCGCGAGGCCGAGGGGAAGCAGATCTGCAGCGGACGGGGGGAGTGCAGCTGCAACCAGTGCCTCTGCTACGAGAGCGAGTTCGGCAAGATCTACGGCACGTTCTGC

Function

NR:

description
PREDICTED: integrin beta-5-like isoform X1

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06588 ITGB5; integrin beta 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000833 True 1632 mRNA 0.53 9 4792109 4804342

Neighbor

gene id symbol gene type direction distance location
AMCG00000826 NA coding upstream 20100 4752867 ~ 4772009 (+)
AMCG00000827 NA coding upstream 40765 4728576 ~ 4751344 (+)
AMCG00000828 NA coding upstream 71562 4710631 ~ 4720547 (+)
AMCG00000830 NA coding upstream 83488 4708098 ~ 4708621 (+)
AMCG00000829 snx4,LOC107660619,LOC107741918,LOC107555933,LOC107673751,LOC107714137 coding upstream 88844 4684695 ~ 4703265 (+)
AMCG00000834 itgb5,LOC106582337 coding downstream 14863 4819205 ~ 4823894 (+)
AMCG00000831 tnfaip6 coding downstream 29015 4833357 ~ 4838880 (+)
AMCG00000832 NA coding downstream 39750 4844092 ~ 4863848 (+)
AMCG00000837 LOC107580446 coding downstream 220953 5025295 ~ 5034697 (+)
AMCG00000840 LOC107714401,LOC107596066,LOC107661140,LOC107555914,LOC107741932,LOC107660638 coding downstream 235606 5039948 ~ 5048084 (+)
G126368 NA non-coding upstream 547073 4244732 ~ 4245036 (+)
G126301 NA non-coding upstream 1062053 3725920 ~ 3730056 (+)
G126248 NA non-coding upstream 1118933 3670802 ~ 3673176 (+)
G126240 NA non-coding upstream 1135528 3652673 ~ 3656581 (+)
G126215 NA non-coding upstream 1233685 3555566 ~ 3558424 (+)
G126500 neb,LOC106518889,LOC106951376,LOC103134835 non-coding downstream 72525 4876867 ~ 4880503 (+)
G126568 NA non-coding downstream 316703 5121045 ~ 5124330 (+)
G126569 NA non-coding downstream 322217 5126559 ~ 5126808 (+)
G126570 NA non-coding downstream 322972 5127314 ~ 5127656 (+)
G126572 sec22a non-coding downstream 324165 5128507 ~ 5130661 (+)
AMCG00000734 NA other upstream 2977952 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 3093536 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 3186078 1599696 ~ 1606031 (+)
G125561 NA other upstream 4388518 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 656959 5461301 ~ 5465981 (+)
G127134 NA other downstream 3812857 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 5295941 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 7195322 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 7484608 12288950 ~ 12385042 (+)

Expression


Co-expression Network