AMCG00000834 (itgb5,LOC106582337)


Basic Information

Item Value
gene id AMCG00000834
gene name itgb5,LOC106582337
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4819205 ~ 4823894 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000834
GAGTGCATTGAGTGCCGTCTGTTTAACTCCGGGAGACTTGCTGACAACCAGACCTGTCAGAGACAATGCAAGGATGAGATCATCACAGTGGACACTCTGAGAACTGATGACCCAAATGCAGTTCTTTGCctgtataaaactgaaaacGATTGTGTGATGAAATTTACCTACTCTGAACACGCCAGTGGCCAGTCAATCCTTGCCGCACTTAAAGAGCCAGAGTGTGGAGCGGCTCCAAATGCCATGACGGTCCTGCTGGCCGTTGTAGGCAGTATTCTGCTGGTTGGCATCGTACTCTTGGCTATCTGGAAGATGGTCATCACTATCCATGATAGGCGAGAGTTTGCCAGGTTTCAGAGCGCCCGCTCCAGAGCCAGATATGAGATGGCCTCCAATCCTCTGTACAAGCAGCCGATCTCGAGCCACGCGGTGGAGACGATGTTCAACATGCGCAGTAAGTCCTACAACGGTGCGGTCCACTGATTTCTGACAGAAGAAATGGCAAAATATGACTGGACCAAAGAGAGGACAAGACACCGGAAGATAATGACCGTGCAATATTGACCAGCAGACCTATTCATCTGCAAAGGATACATAATGGACTAACCAAGCAATCAAGGGATGAGCGAGCTATCTGCAGACTACAAGATGAActtgtggatttattttccagCGATGTCTGAATGGTCTGATCCATGTATTGACCAGAAACTTGCCAATATTTTGCTTCCGCAGCAGATGAACATATTGAACTCTGTTTACTGTGCTACTTTTTAGACTGGATTGAGGGGGGTATAATTCATGTGATGGACTTTGCTACTTGGAAATGATGGGTGAAGACACCGTTCAAGTATTTttgtaaagatttgtttttgtttttctatagaGAGAAGACTGTACTATGAATCATGGGAATCGGTCATTATTTTGCCAGTCCTGcataaaagacatttaaatacacttttgCAATTTATATGAATTGTACAAATAATAGGCTGTCattttctatatgtatatatatttttgtttgtttttaaccatgAGGGTACTTGCCCATTCAACAGCAGAACGAACTATGCATTTTTACTTAACTACagaaaattattcattttttaaaaaacatcaagAACTCTTAAATTTGATAGAAgtacaaaacatatacatattttattggtGATTAGATCAGCATTCTGGTACTAATGTAATGAGAGTGGTTTGCTGACCCAGATTTGCACAAGAGACATTACGGACAGAAGAAAGATAAATGCAAGGTGTCATTTGCGGGGTCGTTTGCTTGAACATGTatctatgaaataaatatgaatatttaagaGATTTGTGCtttgaatgctttgaaatggggttgtttgaaatgaaatgtaaacaaaatgcagatCAGACGCTGTTCCTGTAACATCTCAACTGAGGCCTTCTTATCTGGTATGTAGACTTAGTGTGTTGGGGGTTGGGGCAGGGAATAGTGATTTCTGATCTGTgactaatgtgtgtgtgtgtatatacacccTGTCAAACGCATACACCAGGGTCTGCAGTATTGCCTTACTACATCCTGGGTATCTTCCTACCAGACTGGGATTCAACTCTGTGGTTGCTGCAACTTGGAAAATCATTGTACTCTAgaaattaaagcttttttttattgttttcactctctttattcaaatattggagtttttttgataaagaactaaataaaaaaacagtggatatatatatatatatatatatatatat

Function

symbol description
itgb5 Predicted to enable integrin binding activity. Predicted to be involved in several processes, including cell adhesion mediated by integrin; cell-matrix adhesion; and integrin-mediated signaling pathway. Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Predicted to be active in cell surface and focal adhesion. Is expressed in margin. Orthologous to human ITGB5 (integrin subunit beta 5).

NR:

description
PREDICTED: integrin beta-5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000834 True 1755 mRNA 0.40 4 4819205 4823894

Neighbor

gene id symbol gene type direction distance location
AMCG00000833 LOC106586391,LOC106582337 coding upstream 14863 4792109 ~ 4804342 (+)
AMCG00000826 NA coding upstream 47196 4752867 ~ 4772009 (+)
AMCG00000827 NA coding upstream 67861 4728576 ~ 4751344 (+)
AMCG00000828 NA coding upstream 98658 4710631 ~ 4720547 (+)
AMCG00000830 NA coding upstream 110584 4708098 ~ 4708621 (+)
AMCG00000831 tnfaip6 coding downstream 9463 4833357 ~ 4838880 (+)
AMCG00000832 NA coding downstream 20198 4844092 ~ 4863848 (+)
AMCG00000837 LOC107580446 coding downstream 201401 5025295 ~ 5034697 (+)
AMCG00000840 LOC107714401,LOC107596066,LOC107661140,LOC107555914,LOC107741932,LOC107660638 coding downstream 216054 5039948 ~ 5048084 (+)
AMCG00000841 adcy5,LOC107555914,LOC107660638,LOC107661140 coding downstream 257962 5081856 ~ 5115984 (+)
G126368 NA non-coding upstream 574169 4244732 ~ 4245036 (+)
G126301 NA non-coding upstream 1089149 3725920 ~ 3730056 (+)
G126248 NA non-coding upstream 1146029 3670802 ~ 3673176 (+)
G126240 NA non-coding upstream 1162624 3652673 ~ 3656581 (+)
G126215 NA non-coding upstream 1260781 3555566 ~ 3558424 (+)
G126500 neb,LOC106518889,LOC106951376,LOC103134835 non-coding downstream 52973 4876867 ~ 4880503 (+)
G126568 NA non-coding downstream 297151 5121045 ~ 5124330 (+)
G126569 NA non-coding downstream 302665 5126559 ~ 5126808 (+)
G126570 NA non-coding downstream 303420 5127314 ~ 5127656 (+)
G126572 sec22a non-coding downstream 304613 5128507 ~ 5130661 (+)
AMCG00000734 NA other upstream 3005048 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 3120632 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 3213174 1599696 ~ 1606031 (+)
G125561 NA other upstream 4415614 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 637407 5461301 ~ 5465981 (+)
G127134 NA other downstream 3793305 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 5276389 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 7175770 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 7465056 12288950 ~ 12385042 (+)

Expression


Co-expression Network