AMCG00000837 (LOC107580446)


Basic Information

Item Value
gene id AMCG00000837
gene name LOC107580446
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5025295 ~ 5034697 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000837
GCCGCAATTTCCTGCTTCGGAGCGACGGGAGGAGATCAGCGAGTCCCAGCGAGAGACATGGCAGCACCCGCTCCCGGGGCCGGCAAAGCGACGCACAACGATGCGTCCCACAAGCGCAAAAAGGGGCCGGGGGCTCTGGCAACCGCCTACCTGGTCATCTACAATGTGGTCATGACGGCAGGGTGGCTGGTCATAGCTGTTGGACTGGTCCGTGCATATCTTGCCAAAGGCAGCCATCACGGCCTGTATTACTCCATAGAAAAGCCCCTGAAGTTCTTTCAGACGGGGGCTCTCCTAGAGatattacactgtgctgtagTAACGGAAATTATCCGCTACTCCTTCTACACATTCAGCCTTCTCAACCATCTTCCATACCTCATTAGATGGGCCAGATACACTCTCTTCATCGTTTTGTACCCCATGGGTGTCACCGGAGAGCTGCTGACCATATATGCCGCTCTGCCCTACGTCCAGAAGACAGGGTTGTATTCGGTGACACTGCCGAACAAATACAACTTCTCCTTCGACTACTACACATTCCTCATCCTGACAATGGTCTCTTATATTCCCCTTTTCCCCCAGTTGTACTTTCATATgatgagacagagaaagaaagtgttGGGACCAGCAGAGGACTACAGTAAAGTGGAATAAATCCGGCGGCGCCCCAGACGGAATGATTAATACAAAGTAGACGACCGCagaaaagattacattttaaatgttgcctGACAAATTTAATATCTGCTCATCAAAAATGAACCCAAATGTCtcaaatggggggaaaaaataataggGCCAGGATGATTACTAACACAGTACTCGTTTGTAAATGAACTTTTAAATATTGGGAtgttgcattttgaaataaaagatGAGATGCTTGTTTCTAGAAGATGAGAACATGCAAGTATTATGATAACCAACATGCTTACAATGTGATAatggtaaaattaaaataaatacacttaatATGAATGTAACATCTGGTGTTAGTTGGCAGAGTCACTTAGgatactgaaaaaatatagaatttcTTAGTTCTACGAAACCAGTCGGTAATCATTCTGTATTATTCCTAAGAACCCTTATATTCGTTAGCAGTGTacgtaaaaaatgtaattaagaacaCTGCTAGTTTGCTTTTCCCATCATTGACTGTTTTGTAAGGCTGGAGCAATTGATTTATgggtaatatatttattaatcaatgtGATGAAAGAGCAAAATCTAAAATTCAGCAGATTCTGTGGAGTGTTGTGCAACATTACtagcaaacaataaataaatatacagcaaCGTATAAATACGTGAGATCTCACACCATCAGTGTTTGTGTATCCCAGCTGAAGGGAAAAAAACGAATTGGTTCAAAGGAAGTGTGTTCAAATTGTACACAGAATCAGGGAAAGTGATTTGAAGGTAGCAGAGAAAGACACATCTTTGCAAAGAATCacattaataattgaattaaatgcaaagatattaaccaaaacaatataattaattgatgCACTGGCTCAGCCTTACTGTTTTGCTCATGAGGGAAAAAATCCatattctataaaaaaaaacaccacttttTGAGTTCATTTTAATAGGGGTGAGGACAGGTTAAAAGTATGCATATTGTAATGTTcataaattgaattattcagCAGAAACCAAGCTTACAGGGATATCTCCCCAACGGTTCCAGATCTATTTTCATAGTAAAATAACGTTAAGCTTGTTTCGCACATATTATTATACTACTGTTTCATCGTTGATCTGTTTAAACTGGAATTGCAATCTTGACCGTGAATTGTTTACCTGTTTCCCATCAATCTTGTTTATATTTCTTAGTTCAGCAAAATTACCTGattatataattacatgaaATTAACGTAGCAACACATAAGACTAAGCATACAATAAACGTAGCAGTGTAATATAGAGTTTTGTACAATTAAATAAGCCTTAATAGactttttgtgtatattttttcgATTAATTTATTGAACTTTAAAGCTTTACCTCGTTAGTGATGATAAACCGAACCCATTTAATCCAAGTGAAACCTGTGCACTGAACATTATGGGAAAAGGGGTCTGGCTAATCCAGTAATAAagtttgtgtttgcattgctacagttcatgcattttattatataattaaagcaCTGAGTAGCTAGAACTACTAAACCGTTAAGAAACAGAAAGCCTCGACCAAACTAGAAACCAAGGTGAATCAGATGAACTCCTTTTGGAGTCACGCATTTCCAGTCATTCAAATCCAGTAATAACTGCAGAAAGATCTGAAGGGAGTGTAGTTGAATGCATGTCATCTGCTCTTTAGTTGGTTGTAAAGAGGGACCAAGAACAGGGTAATGTTTTATAGAGCGTCTAAGCTTAGTATGGGTTCCGTTTACagcatttatattcatattgcCTATGCTAGCATTAGAGAGAGTTTTGTACAGTTTTGACATATCAGGCTCAAATAACTGCCACAGTTTTGTACGGTTTTCCTGCTCTACTGgtcaaattaattattgatttataaatagctaaccaacaaacaaacactagcTTTACACAGTTAGGCTTGGAAATTGTAACTGTTTTAGCTATGGCttctttttagtttaattaagagtatcttttaatattttatagtacTTTAATAGTGTTTGCATATTTTTAGTTCAATTGTTTTGCTGgacttttgtattttacaaaatcatACTGATGCTAAGGATTggtcatttgaaatgcattttaatcctAACTTTACATGCACTTATTTACAGTTCTCCTAATTCAGATATTGACTCTGTGTGTTATTCTGTCATGATGCAGTGACTTCATCATTCTGTCTttaaaagtacaatacaaatcGTGTTGCAGGTGATCTTCAATATCTTTATCACCGTAAATATTGGTAAGAATatgtaacaaacaaataataataataataaaatccttaTAATGAAGCCAAGGTGTTCCTGAAACAAAATCCTTTTATTATCTAGAGCATAATAAAATCGATGTTGTACTTTATCAGTGTAGTTGGTTTGTACCGTGTTGTTTTCCCTGATAAACAGTGCGTTGTTTCTTGAAGGGTCCTCTCTGTTATTTTCAGTCTTTCCTGCAAGAGTTTTCAATGAGAAATTGCAAAACTTGGCTGAATTGCATGGTGTCTGGTTTTCCCTTGCTGGAATTTATGACAGTTACTTCACAGTAGCAGGTTGGTATTGCAAGGTTAGGAGAAATGTCTCgcatagatttaaaaaaaaaaactttgcaaatattgtataatgtatCAGCATGGCCATGGGTTTAGCAAAATTGAAACATGTATATGACTttcaaatacagtgcagttctgtGTAACTTTGCatgtcaacagaaaaaaaaaatcaccttgtGTCCCAATATGGCACTATTGGGGGGAGAAAAAGCACGTAACATTTTACTTGGATTCAATTTAACAAGGTTGGGCTTTTTGATACAAACCTTTTGCATGGGACCATTATCTTCAAAATATGAGACCAGACTTTGTATAATATAGcaagtaatataatatatatttgcaataaaCTCTTAATACAGGAAGCAAAA

Function

NR:

description
PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2-like, partial

GO: NA

KEGG:

id description
K10703 HACD, PHS1, PAS2; very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000837 True 3605 mRNA 0.37 6 5025295 5034697

Neighbor

gene id symbol gene type direction distance location
AMCG00000832 NA coding upstream 161447 4844092 ~ 4863848 (+)
AMCG00000831 tnfaip6 coding upstream 186415 4833357 ~ 4838880 (+)
AMCG00000834 itgb5,LOC106582337 coding upstream 201401 4819205 ~ 4823894 (+)
AMCG00000833 LOC106586391,LOC106582337 coding upstream 220953 4792109 ~ 4804342 (+)
AMCG00000826 NA coding upstream 253286 4752867 ~ 4772009 (+)
AMCG00000840 LOC107714401,LOC107596066,LOC107661140,LOC107555914,LOC107741932,LOC107660638 coding downstream 5251 5039948 ~ 5048084 (+)
AMCG00000841 adcy5,LOC107555914,LOC107660638,LOC107661140 coding downstream 47159 5081856 ~ 5115984 (+)
AMCG00000844 NA coding downstream 187300 5221997 ~ 5265705 (+)
AMCG00000845 NA coding downstream 281500 5316197 ~ 5332706 (+)
AMCG00000849 NA coding downstream 362628 5397325 ~ 5404570 (+)
G126500 neb,LOC106518889,LOC106951376,LOC103134835 non-coding upstream 144792 4876867 ~ 4880503 (+)
G126368 NA non-coding upstream 780259 4244732 ~ 4245036 (+)
G126301 NA non-coding upstream 1295239 3725920 ~ 3730056 (+)
G126248 NA non-coding upstream 1352119 3670802 ~ 3673176 (+)
G126240 NA non-coding upstream 1368714 3652673 ~ 3656581 (+)
G126568 NA non-coding downstream 86348 5121045 ~ 5124330 (+)
G126569 NA non-coding downstream 91862 5126559 ~ 5126808 (+)
G126570 NA non-coding downstream 92617 5127314 ~ 5127656 (+)
G126572 sec22a non-coding downstream 93810 5128507 ~ 5130661 (+)
G126573 NA non-coding downstream 97021 5131718 ~ 5131991 (+)
AMCG00000734 NA other upstream 3211138 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 3326722 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 3419264 1599696 ~ 1606031 (+)
G125561 NA other upstream 4621704 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 426604 5461301 ~ 5465981 (+)
G127134 NA other downstream 3582502 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 5065586 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 6964967 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 7254253 12288950 ~ 12385042 (+)

Expression


Co-expression Network