AMCG00000840 (LOC107714401,LOC107596066,LOC107661140,LOC107555914,LOC107741932,LOC107660638)


Basic Information

Item Value
gene id AMCG00000840
gene name LOC107714401,LOC107596066,LOC107661140,LOC107555914,LOC107741932,LOC107660638
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5039948 ~ 5048084 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000840
ATGTCCAGATCTAACAGCGTGAGTCCACCCGACTTCGGTGCTCCCGGACCGAGGGGAGGGACCGAGCACAGATCCGCCTGGGGCGAGTCCAGGGCCAACGGGTGCCCCTACTCCGCCAGATCCTCCAGCAAGAAGCTCACCAGGTCCAACAGCAGATGGAGGGAAGATGATGACTTGGACCGGCAGCCAGGAAGAACCACAACCACAGTGAGCCGGGTCAGCTTCAGGTCCAAGTCTGCGTGGCAGGACCATGGGGAGGAGGGTCGGAACAACAACAGGTCGACTCCGAGGCACACGGATGGAGAAGTGAGACCTAAATCCGTGGAGCTGGGGCTGGAGGACAGGAGAGGGAAGCCCAAACCCGACGAAGATAACATCACTCCCGAAGTCCACTTTTCCATGGTCGAGTGCTGCCTCGGCGTGATGCAGATCTTCAGATCCAAGAAGTTTCAGTCGGAGAAACTGGAAAGGTTGTACCAGCGTTACTTTTTCCGGCTCAACCAAAGCAGCCTGACCATGCTGATGGCCGTGCTGGTGCTGGTCTGCGCCGTGATGCTGGGCTTCCACTGCGCTGGACGGCTGGACAGTGTCACCTACGTGGTGGTCTTTTCGGTGGCCATCCTTCTCGTAATCATACTGATGATCGTGTGTAACCGGAATGGATTCCACCAAGACCACATGTGGATCGTCTGTTATCTGGTCATCctggtggtgctggtggtgcAGATCATTGGGGTGTTGCTAGTGGAGCCCAGAAGTGCCTCCGAAGGGATCTGGTGGACGGTCTTCTTCATCCACATCATCTACACCCTGCTTCCCGTGAGGATGAGGGCCGCCGTCATCACGGGGCTGATTCTGTCGGCTATACACCTGGCCATCTCATGGAAGTTAAACCAAATGGACATCTATCTATGGAAGCAAAAGATGCGGCGGATAAGGAAACCACTTTGTGGAGGTGCGCAGATCTCCCTTCGGAAGGGAATACTAGAAACTGCAGAGAGTAATTTGGCCCCGGTCCAGCTTTCGCAGGGTTTGTGGCGGCTGTAA

Function

NR:

description
PREDICTED: adenylate cyclase type 5-like

GO:

id name namespace
GO:0045471 response to ethanol biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0001932 regulation of protein phosphorylation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004016 adenylate cyclase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000840 True 1047 mRNA 0.56 2 5039948 5048084

Neighbor

gene id symbol gene type direction distance location
AMCG00000837 LOC107580446 coding upstream 5251 5025295 ~ 5034697 (+)
AMCG00000832 NA coding upstream 176100 4844092 ~ 4863848 (+)
AMCG00000831 tnfaip6 coding upstream 201068 4833357 ~ 4838880 (+)
AMCG00000834 itgb5,LOC106582337 coding upstream 216054 4819205 ~ 4823894 (+)
AMCG00000833 LOC106586391,LOC106582337 coding upstream 235606 4792109 ~ 4804342 (+)
AMCG00000841 adcy5,LOC107555914,LOC107660638,LOC107661140 coding downstream 33772 5081856 ~ 5115984 (+)
AMCG00000844 NA coding downstream 173913 5221997 ~ 5265705 (+)
AMCG00000845 NA coding downstream 268113 5316197 ~ 5332706 (+)
AMCG00000849 NA coding downstream 349241 5397325 ~ 5404570 (+)
AMCG00000847 NA coding downstream 378077 5426161 ~ 5441254 (+)
G126500 neb,LOC106518889,LOC106951376,LOC103134835 non-coding upstream 159445 4876867 ~ 4880503 (+)
G126368 NA non-coding upstream 794912 4244732 ~ 4245036 (+)
G126301 NA non-coding upstream 1309892 3725920 ~ 3730056 (+)
G126248 NA non-coding upstream 1366772 3670802 ~ 3673176 (+)
G126240 NA non-coding upstream 1383367 3652673 ~ 3656581 (+)
G126568 NA non-coding downstream 72961 5121045 ~ 5124330 (+)
G126569 NA non-coding downstream 78475 5126559 ~ 5126808 (+)
G126570 NA non-coding downstream 79230 5127314 ~ 5127656 (+)
G126572 sec22a non-coding downstream 80423 5128507 ~ 5130661 (+)
G126573 NA non-coding downstream 83634 5131718 ~ 5131991 (+)
AMCG00000734 NA other upstream 3225791 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 3341375 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 3433917 1599696 ~ 1606031 (+)
G125561 NA other upstream 4636357 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 413217 5461301 ~ 5465981 (+)
G127134 NA other downstream 3569115 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 5052199 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 6951580 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 7240866 12288950 ~ 12385042 (+)

Expression


Co-expression Network