AMCG00000842 (sec22a,LOC107722877)


Basic Information

Item Value
gene id AMCG00000842
gene name sec22a,LOC107722877
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5121107 ~ 5132844 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000842
CGTAAACACAGCCGCCTGTCTGCAGAGGGATACGGGGATGAAATGTAACCCATAATAAGCAATGCGACGCCTTTTTTCTGGGACAAAACTCCGTCCAGAGCACCCGTCATCGGCACCATTTTAATACCCGGTCACATTCAGGTGGGCAGTGTCAGAGATTGACGATGTCCACAGTCCTGTTTGCTTCGGTGGTCCGGGTGCGAGATGGTCTCCCTCTGTCTGCATCCACTGATTATGAGCAGGATAAAGGATTGCAGGAGAGTAAGAAATACCTGAAAAACCTCTCCAAAAAACTAAGCCAGTTTCCTGACAGGTGTATGCTGAAAGCTGGACAGTACAACATCAATTTTACAAGTTCTTTAGGGGTCAGTTATATGATGGTGTGTACAGAGAGCTATCCCAATGTCCTGGCCTTCTGCTTCCTGGACGAGCTGCAACGAGAGTTTATCGTTTCGTACGACACAAAGCGGATAAACAGTGCTGTTCGACCGTACTCCTTCATTGAATTTGATAATTTCATTCAGAAGACCAAACAGCGGTACAACAGCCCTCGGTCCCTGTCAACGAAGATTAATCTCGCCGACATGCAGACGGAAATCAAGCTCAGACCGCCCTACCAGCTCACAGCTGCAGATGTAGGGACCGTCAATGGATTTTCACACCCGTCGCCCACCAAATATAAGGGAATAGCTCCAAACCAAATGCTGGAGCCCGTGACTCTTGCTGGGATCGTGTCTTGTGTGTTAAGCCTGCTCTGTGGCGGTCTCAATTTAATCCGTGGAGTTCATGCCATTGAAAGCATATTGCAGAATGAGGATGAAGactttaattatgttattgCCTTCTTCCTTGGAACAGCAGCCTGTTTGTATCAGTGTTACCTGTTTGTATACTGCACCGTATGGAGGAACTTCAAATCTTTCCTGGCTTTTGCTTTAATCTGCCTGAGCAACATGTACCTGTATGAACTGAGAAACGTGTGGCAGATCTTATTCCATGTGACAGTGGGGGCTTTCATCACACTGCAAGTCAAACTACGGCAGCCTCAAGGGAAAGCCCCCGACTACAATGTGTGAGACGGACACTGCCCGAGAAAAGCCCTGGGACACTGAAGGGGTCCTGCCAAATACGGGGCGATTCTGACGCAGAGACGGCAAATTCCTGCTGAAATtcacaaaaactgaaaaccaaGATGGAAGACCAAATACTAGAACGGTTGACGCTGCTCGTGGTGAAAGTTCCCAGTGTGTCGGAACGATGCATTTCACATCTTACAAGTGTGTAAGCATGCACATCATTAATACTATGCAGGTTTCAGTGCAGCACAGCAGAGCACATTGAGGATGTTTCTTCATTTCTATGagttcaaaatgtttatttagttgttgtttttttaagccatAAAGGcctcatttttacttttaaatgtgtacatcttattgttatttatttggaatgACCAACTAACTAATTTAAAGGCTTCTGTGAGCTGCACAAGCTTAGTCACAAGCGGAGACTTTCACTAAAACAGTTGACACGCACGCTAGAGAATGGGCACCTCTGGAGGTTCTTTTATGTGAATTAAATTGTTGCGGACTaaactggtgtttttttttaattaattgttttagtttgtttcctAAATTATTAAACAACAGATTCCTCTTCATCTTCTCCATTCTGTTTTCATGAAtacctttcattttatttacctCCTCTGGATAGATaaagcacccccaccccccaaatatcaaaataaatagaagaaaacCACAGCCTGACTTAATGACTACTAGAAAAAACAGGTCTTGGTGCAGAAAGACGTTTGTCAGCAGTTCTACTCGAATCATGTACTGAAATCACGACTTCACGATTCTATATTGAGTGACAATACTGCCAGTTTTATAACAGTAGTGATGGACGCTGCTGTATTTGCCTTAAAGTCCTCATAAGTTCGCCTAATGTGTCCCTTTAAGCGCTGCTATTTTGATAAACCCTATAGTGATGCTTGAGGCACACCTTTCATTTCTATCAGATGTATCATACTTCATAGTGTTCAGCTGGATAAAATCAATCTCTCAGTGAAGTTGCTGGAAACTATTTGTCAGAAGGCTGGAAGAACATCATAAAATACAGGGTTCATATTTTCTGACTTTCTTTTTGGGTTAATTTTAAAACCTTAATTATATCTTTGAAGTTTAAATGTCTAGTGATTTTTAGAGGTAGTGCATAGATATAAAAAGTGAACTATAATGGAGTGTAATGCCCATGTCTACATATATGTTTTGAGACTGTATGCATTGACTTGTTTGTGGCTGCAGAATTAATATTTAGAGCATAACAAacattatacatgcatttaaagaGATTGCTGTAACAATTTAATAGTGTTCTGTAATTATAAAACGAGTTAAATAACCTGTGGGCATAAATTGTATTATCTTCtcaaataatcaaatttgtGAAACTGTCTGTTTATAGTGACACGCTCTATTGGATTTAAATGGCACAGATAGGTTGACAAAGAACTCCTCACCTCAGAGTCTGACCTACAGGAATAAAGTACAAAGCggcatttcaatgttttaataaaaattatataaaatatttatacaagaagcatatttgatttcaatttttcaaatttcagaCTGTAATGTATCTGAcgttaatatatacagtgcaaatatattCATCCTGGAATGTGAAAACTGGTTCTCCTTTGTTTACTTCATTTTCTGCATTCCTCGTCTTTAATttctaaagtaaaatacattattatggACTGCCTCccattttaaattgttcatgTCTCACTGGGCTGTAATGTTTCAGCGTTTGACAAAAGGCACACTAGGGAAGAGAATGAAATCATGGGCATAGACAATAATAAGGTTTAATGTGTCTGCTGGTGAAACTATGCAGTTGTCCAAATTCATTAACAGTggcataattgttttaataaacctCTTTCAGAAATTAATTTCCGTGCATTACTGCATCGTAGCTACACTCATTAGTTTTTTGTGGGGTTTATgcttaaattgtgttttgcagCTTCATAAATACAGTGGGTTATGATGATTAAAAAGCACCAGATTCAGTTGGCTGGTGTGTATTCACTATTTTGTGCTGCATATTTCCATAGCAGTAGCTGAGCATTATCTTGTAAGCGCACAGTTTCCTTCAGTGTTGCCATGCTGATAATGGCAGGCTGAAATATTTCTGaattttccattgtgtttacatcTCCCATCTCAACACAGGATAAAGCGAATAATAAACCGCTGAGCAGAAGCTTTCAGGGTTACCGTACGCCTTGTTTAGACTGTTCATTGCAGAGATCAAATGTAGTTGGATTCTGAGAAAGTATTAAAGgaattatttataaacactgTAGTATGTTTAATTTTAGCTGATACTCATTAATTTTAGATCTTTTAAGGTTCTGAGTGATTATATACAATACTCAGTGTTGTTTGGAAAACTACACCTTGGAGCAATGAATAACTCACTTTATAAGCATCATGTTCTCGGAGCAAAAGTGTTcaatatttgcataattgaTGGGTTTTACAATGCGTGTGGCATAAtaatgctttttgttgtttactTCATGTTCATGTAAACCAATAAACAACAGGagcttatttaatatttcatgtcTAATCTGTctgtgcggg

Function

symbol description
sec22a Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SEC22A (SEC22 homolog A, vesicle trafficking protein).

NR:

description
PREDICTED: vesicle-trafficking protein SEC22a

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048280 vesicle fusion with Golgi apparatus biological_process
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08520 SEC22A_C; SEC22 vesicle trafficking protein A/C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000842 True 3683 mRNA 0.39 7 5121107 5132844

Neighbor

gene id symbol gene type direction distance location
AMCG00000839 NA coding downstream 96216 5014369 ~ 5024891 (-)
AMCG00000835 arl5a,LOC107555355 coding downstream 166933 4944217 ~ 4954174 (-)
AMCG00000836 NA coding downstream 182319 4864200 ~ 4938788 (-)
AMCG00000824 NA coding downstream 437466 4669268 ~ 4683641 (-)
AMCG00000825 LOC107714772,LOC106574437,LOC104928565,LOC106575257 coding downstream 469994 4646961 ~ 4651113 (-)
AMCG00000843 pdia5,LOC107596065,LOC107555900,LOC107661141,LOC107660642 coding upstream 5113 5137957 ~ 5174410 (-)
AMCG00000846 dirc2 coding upstream 146700 5279544 ~ 5316096 (-)
AMCG00000854 NA coding upstream 221542 5354386 ~ 5370155 (-)
AMCG00000852 NA coding upstream 248296 5381140 ~ 5391829 (-)
AMCG00000850 eaf2,LOC106586422 coding upstream 259758 5392602 ~ 5396386 (-)
G126563 NA non-coding downstream 2071 5116054 ~ 5119036 (-)
G126554 NA non-coding downstream 86410 5013868 ~ 5034697 (-)
G126476 NA non-coding downstream 343323 4773581 ~ 4777784 (-)
G126445 NA non-coding downstream 412256 4703139 ~ 4708851 (-)
G126432 NA non-coding downstream 477641 4642680 ~ 4643466 (-)
G126631 NA non-coding upstream 239405 5372249 ~ 5372459 (-)
G126665 NA non-coding upstream 329723 5462567 ~ 5464052 (-)
G126698 NA non-coding upstream 437100 5569944 ~ 5572133 (-)
G126767 NA non-coding upstream 810542 5943386 ~ 5949894 (-)
G126873 NA non-coding upstream 1201869 6334713 ~ 6335866 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 138456 4957138 ~ 4982651 (-)
G126427 NA other downstream 484591 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 1464546 3553047 ~ 3656561 (-)
G126096 NA other downstream 1971855 3131714 ~ 3149252 (-)
G126700 NA other upstream 439861 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 1556724 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 2497071 7629915 ~ 7645722 (-)
G127292 NA other upstream 4286152 9418996 ~ 9419325 (-)
G127443 NA other upstream 5141843 10274687 ~ 10278211 (-)

Expression


Co-expression Network