AMCG00000843 (pdia5,LOC107596065,LOC107555900,LOC107661141,LOC107660642)


Basic Information

Item Value
gene id AMCG00000843
gene name pdia5,LOC107596065,LOC107555900,LOC107661141,LOC107660642
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5137957 ~ 5174410 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000843
ATGCGTATCCAGACGTGGCAGCAGCATCATGGCTACTTGGATTCGCTGCGCATCCAGTTCCTCATGTGTGACAACCCAGATTACaccatttgcagaaatacatTTCCTCTCAAGAGCGCGCTCCCTGCGTTGTTGCTGGCAGTTAAAGTCTCCCCTCTTATAGAGAAAGTCAGCGACCACAAGGACTTCAAAAAACTACTGCGAACAAGAACCAATGTCCTCATCCTGTACACTAAATCAGCCACCTCTGGTGATGGTCAGCTAAAACTGCTGTCAGATGTGGCACAAGCTGTGAAGGGCCAGGGTACCATTGCCTGGGTGAACTGTGGtGATTCGGAAGGCAGAAAATTGtgcaagaaaatgaaagtgGATCCCAGTTCCAAAAAGGGTGGAGCTGAAATGCTACATTATAAGGATGGAACCTTTCATACTGAATACAACAGGCCTGAGACATTTAAGTCCATGGTAGCTTTTTTAAAAGATCCGACCGGGGCGCCTCTGTGGGAAGAAAATCCAGAAGCGAAGGATGTTGTTCACCTTGAAAATGAGAAGGATTTCAGGAAACTGCTAAAGAAGGAGGACAGACCCGTTTTAATGATGTTCTATGCACCTTGGTGCGGTGTTTGCAAGAGAATGATGCCAGCCTTCCAGCAGGCTGCCACAGAAACAAAGGGTAAATATgTGCTAGCTGGCATGAATGTGCATCCCGCTGAGTTCGATGCATTAAAGCAAGAGTACAGTGTTAAGGGCTACCCGACCTTTTGTTACTTTGAgaaGGGGAAATTTCTCCATCATTATGAGAATTACGGAGCCACAGCAAAGGATGTAGTGGAGTGGTTGAAAAACCCTCAGCCTCCTCAGCCCAAGACCCCCGAGGTCCCTTGGTCAGAAGAGAGCTCTGATGTCTTCCACCTCACTGATGAGAGCTTTGACCAGTTTCTCGAGGAGCACCCGTCAGTTCTGGTTATGTTCTATGCCCCATGGTGTGGCCACTGTAAAAAAATGAAGCCAGATTATGACGAAGCTGCAGCCATTCTCAACAAAGACAAAGATAGCCCAGGTGTCTTGGCAGCGGTCGACGCCACGATCCACAAAACGATCGGAGAGCGGTACCACATCTCGGGCTTCCCCACGGTGAAGTACTTTGAGAACGGAGAGGAAAAGTATACAGTGCCACATCTGCGGAGCAAAGACAAGATCATCGAATGGCTTCAgaaCCCACAAGCACCCCCTCCTCCAGAGCAGTCCTGGGACGAGAAGCCATCCAGCGTCAGCCACCTGGGAGCTGAGGACTTCAGAGAGGCGCTCAAGAAGAAGAAGCACGCGCTGGTGATGTTTTACGCCCCCTgGTGCCCTCACTGCAAGAACGCAGTCCCCCACTTCACAACGGCAGCCGATCTCTTTAAAGACGACCGCAAGATTGCCTACGTAGCTGTCGACTGTACTAAGGGACTGAACCACGATCTTTGCAAGCAAGAGGGTGTGGAAGGCTACCCAACCTTCATCTACTACAACTATGGGAAATACGCAGAGAAGTacaatggagagagagggGAGTCCGGGTTCATTGGCTTCATGAAGACCCTCCGGGGCAAGGATCAGGAGAAAGTAGGGAAGAGGAAAGATGAGCTTTAACGCCCTTGTGCCGGGAAGAAGGAGCCCGCCGTTGCACTGTGAGAGAGGCGGAGCCCTTCGTCCACGAGAGCCAGAGACTTCACACCTCATCCGAGACCATTTTTATACCGCCGAGCAGTTTGTACAATATTTCTTACACAGTCCGACCacttgagatttatttttgtcgTTAGAAAACGAATAAAAACGATAAAAaagggttttaattattttaatccgAAGAATCGCCCATTTCCCCCAGATCCTGTGACTGCCGATCTCACGTATTACTCTACCTATGCAATACAGTGTCCTCCCCAGTTCTGGCAGACGCCGTCGGTGTTGGGCATGTTCCTTTAAATTGGATAATTGAAACTAACTCAAGATGAGTTCCTAAGAAGAGGGGgagaaatatattgtatgttcaAATCCCAAGATAtttttgtatgaaaatgtttgagTTGAAAAGTATACATATAGTCCAAATTGTGGCCTTAAGTTAAAGTGTGTGGAAGATCCTTGTTAAAGAAATATCCCAAGCTTTCCATACACTTGTGAGATTATCAGTGATTATAGGTTGGGCTTTTTTTAACTGTAACAGCAGTGATGTGTGCTGGTGTAATTTTGAACTAGTTGTTCTTtatcccccctccccacccctgtGTTTTATAGTCTGTTGTAAAAAcgccaaaaataaatgaaatgtttgaaagACAAGTGGTGTGACACAAATAACAAGGTTGAAGCTGATTTCAAAGGAAACGTTTTAAAAGCAGGGACCATGTCTGGTATACCATTTCCCAGcacatcatttattttgctgtaggATTTTAAAGGTCAGTTCTTTAAAACTGCAGTTCTGTTTCAGTGaaaatgcagttaaaatatttttaaagagtcCCTCAAAATCCCATTATTCAACATAACCTTTCATCAGGAAGACTGAAGTAGCTGCTATTTGTTTTGGTAGCTCGTCCTCGTATGTGCTGCTGATCTTTCGAAGAGCAATAAATTAAGTAAAGATTCAGCTTTGGGAGGCCCTTTTAACTCCGCAGTTTGCCCGACTGTCACAGTGCATCCTTTTACGGTATATTTTCTATCCAAGTGTTTGTTACACTGGCACTGACAGAGGACTGAGCAGGGGGCGTTCTGGACGACGAAAGTTAAGACAAACCGCTGTTCATCAAATATGGCAAATTGCTTTTAGACGTTCTTGCTGAGAagcagtatatttaaaaaaaaataaaaatcaccagCAGCAAGACGTTCTTATCTGCGCAGCATACTTCACAAGGGACTACATAACCTTTCAACTACTTCTATAATTCTTCATGTCACCCATAATGGGAGGACCACTAGGACCAAGACATCAGAGATCCAGCAGATACCCTCAGTGGCGGGGAATTTCTCCTTGGTCTCTTCCAAAGCAAGTACCAGAGTATTTTCTGCCTCGCTTCCCTTGCCCTGCTCAGTGCAGTACATTCCCCTGAGAGAGGTTACCCAGAGCAATACTCGCAGTCTCGATGAGAAGTCGAAGATGCTCAATGACATCCCCAGTCCTACAGCGCGGTTTTGGGGTGAGAGggattttaataacattatcTCCGTGGTAACTTTAACACTGTACGTTGGCATCTCCCAACTAAAGCgttataaatatttcaagtcCTTTTCTGTAACAGCACTTGTCTTTTATTATTCAGGAGCTGGGTTCGTTCATATTAAATAAGGTTCTCAGGGATAGTGAGAGGTAATTAAAGGGAACTCGtgtattgtaatttgtattccACTCGATGTCCTTGAACTCCAGTTAAGGAATTAAGAATTGTTTACACTTGTATGTGAAATGTAacgaaacaaataaaacatggaagGCGTGGGAGTTTGCTCTTCCTGTGCCAAATCGGGGTGGGATTTAACAAAACCcatggtattttttttgtatagcttGAAGAAATGTGAACAAATCCTCGTATCATGATTTGTCTGTGACTTCCAATAGGCTAAGAGATTCAAACTGACAGAGTACACAGTTGACCTGTGGTGTATTACATACTGTTTCCAAATGTACTGACAGTAACTTTCCTCCACAAGTAGCTTCTTCACCTGTTGTCTTTATTGATTTGCCGTTTTTCTTTGTAGTGACCCATGTACAGTCATGCACTAGAGGAATACGGAGAGGTATGAATTACATTATGCATTAAAGCAATGCACTGTTATATTCCAAAGGTTTCCAAACGCTAGGAAGTTATCACAATAATGCCAAGAAGTCAGTTTTGcctttgttttaactgttttagcCATATGTACAGTTCTGCCCCTAACAAGAAGACCTCAGAAATAAAggctaaacatttaaatgaa

Function

symbol description
pdia5 Predicted to enable isomerase activity. Acts upstream of or within hemopoiesis. Is expressed in several structures, including alar plate midbrain region; anterior axial hypoblast; digestive system; fin; and nervous system. Orthologous to human PDIA5 (protein disulfide isomerase family A member 5).

NR:

description
PREDICTED: protein disulfide-isomerase A5

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006662 glycerol ether metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0015035 protein disulfide oxidoreductase activity molecular_function
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K09583 PDIA5; protein disulfide-isomerase A5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000843 True 3978 mRNA 0.44 18 5137957 5174410

Neighbor

gene id symbol gene type direction distance location
AMCG00000842 sec22a,LOC107722877 coding downstream 5113 5121107 ~ 5132844 (-)
AMCG00000839 NA coding downstream 113066 5014369 ~ 5024891 (-)
AMCG00000835 arl5a,LOC107555355 coding downstream 183783 4944217 ~ 4954174 (-)
AMCG00000836 NA coding downstream 199169 4864200 ~ 4938788 (-)
AMCG00000824 NA coding downstream 454316 4669268 ~ 4683641 (-)
AMCG00000846 dirc2 coding upstream 105134 5279544 ~ 5316096 (-)
AMCG00000854 NA coding upstream 179976 5354386 ~ 5370155 (-)
AMCG00000852 NA coding upstream 206730 5381140 ~ 5391829 (-)
AMCG00000850 eaf2,LOC106586422 coding upstream 218192 5392602 ~ 5396386 (-)
AMCG00000851 tsn,LOC107555354,LOC107686515,LOC107555051,LOC107658218 coding upstream 265620 5440030 ~ 5446252 (-)
G126563 NA non-coding downstream 18921 5116054 ~ 5119036 (-)
G126554 NA non-coding downstream 103260 5013868 ~ 5034697 (-)
G126476 NA non-coding downstream 360173 4773581 ~ 4777784 (-)
G126445 NA non-coding downstream 429106 4703139 ~ 4708851 (-)
G126432 NA non-coding downstream 494491 4642680 ~ 4643466 (-)
G126631 NA non-coding upstream 197839 5372249 ~ 5372459 (-)
G126665 NA non-coding upstream 288157 5462567 ~ 5464052 (-)
G126698 NA non-coding upstream 395534 5569944 ~ 5572133 (-)
G126767 NA non-coding upstream 768976 5943386 ~ 5949894 (-)
G126873 NA non-coding upstream 1160303 6334713 ~ 6335866 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 155306 4957138 ~ 4982651 (-)
G126427 NA other downstream 501441 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 1481396 3553047 ~ 3656561 (-)
G126096 NA other downstream 1988705 3131714 ~ 3149252 (-)
G126700 NA other upstream 398295 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 1515158 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 2455505 7629915 ~ 7645722 (-)
G127292 NA other upstream 4244586 9418996 ~ 9419325 (-)
G127443 NA other upstream 5100277 10274687 ~ 10278211 (-)

Expression


Co-expression Network