AMCG00000844


Basic Information

Item Value
gene id AMCG00000844
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5221997 ~ 5265705 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000844
cctCAGGTGTTTCTCCAAGGCCTACCTTGGCAGCTAGTGTTGGACGGCCCTTTCACCATGGTTGTATCACTGCGGGAGGCCGTCTCCCTGTCAGCGCCAAGTCTACTGCTCCTCCTGTccgtccatctctctctctcccagcaaGTCTCCCCCTACACCGAGTctcggcagcagcagcagcaatgctCCAGACGAGAGCACCCCGTGGTCTCCTTTCAAGcTCTGACTCCCTGGATATCGAATTTCACTTATCCTGGAGTAAAAGACTATTCCCAGCTGGCTCTAGATATCACCAGGAATCAACTGATAGTAGGAGCCAGAAATTACCTCTTCAGATTAAGTCTAGGCAACGTGTCGCTGTTACAGGCAACGGAGTGGGGCCCAGACGAAGACACCAGGAGGTCCTGTCAAAGCAAAGGGAAGACAGAGGTGGAGTGCCAGAATTACATCCGGGTGCTGCTCATCAATGCCAAGAAAGTTTTCACCTGTGGCACGAATGCGTTTCTACCGGTCTGCACGACTCGACAGGTCGGGAACATGAGCCGAGTGATTGACAAGGTGAACGGGGTGGCCCGCTGCCCGTACGACCCTCGGCACAACTCCACCGCGGTGGTGACGGCCCGGGGAGAGCTGTACGCTGCGACCGTCATCGACTTCTCGGGGAGAGACCCTGTCATCTACCGCAGTCTGGGGAACATGCCCCCCCTCCGTACGGCACAGTACAACTCCAAATGGCTAAACGAACCAAACTTCATTTCTGCCTACGACGTTGGGCTGTTCACCTATTTCTTCCTGAGGGAGAACGCCGTGGAGCACGACTGTGGCAAGACGGTGTACTCGAGGGTGGCGCGCGTGTGCAAGAACGACATCGGGGGGCGCTTCCTGCTGGAGGACACCTGGACCACGTTCATGAAGGCCAGGCTGAACTGCTCGCGCTCCGGGGAGATCCCTTTCTATTACAACGAGCTGCAGAGCACCTTCTACCTCCCTGAGCAGGACCTCATCTACGGCATCTTCACCACTAATGTgAACAGCATTGCAGCTTCAGCGGTTTGTGCGTTCAATCTGAGCGCCATTACCCAGGCTTTTAATGGGCCGTTCCGCTATCAGGAGAACCCGCGCTCGACATGGCTGCCAACCCCCAATCCCATTCCCAACTTTCAGTGTGGCACAATCAATGACAGCTCGGCCAACGAGAACCTGACGGAGCGCAGTCTGCAGGACGCCCAGCGCTTGTTCCTGATGAATGACGTGGTGCAGCCCGTCTCCGTCGACCCCCTCGTGATGCAGGACAACATCCGCTTCTCCAAGCTGGTGGTGGACATTGTGCAGGGCAGGGACACGCTCTACCACGTCATGTACATCGGAACAGAGTACGGCACTATCCTGAAGGCCCTCTCCACAGCCAATAAGAACCTGCGAGGATGTTACCTGGAAGAACTGCAGCTCCTCCCCCCCGGCTCGAGGGAGCCAATCCTAGACCTTCAGATCCTTCACAGTGATAGGTCGCTTTTCGTGGGCCTGAACGACAAGGTGTTGAAGATACCCCTGGAGAGATGTTCTACCTACAAAAACGAGAACTTGTGCCTGGATGCCAGAGACCCGTACTGCGGCTGGGACAGCAAGCAAAAGCGCTGCACGACGATTGAGGACAGCTCCAACATGAGCCAGTGGACCCAGAACATCACAGAGTGCCCGGTGAGGAACTTGACGGTCAGTGGTGCCTTTGGACCTTGGTCTTCCTGGCAATCCTGCGATCACGACGATGGCGACACTACTGGAACATGCATGTGCCGCTCGCGGTCCTGTGACAGCCCAGGCCCTCTCTGTGGGGGCCGCACCTGCGAGGGGCCGACCATTGAGGTGGCCAACTGCTCCAGTACGTCCTGTGGAATAGGGTTCCAGGTCCGCCAGCGCTCCTGTAATAACCCCTCCCCGCGGCACgggggcagagtgtgtgtagggCAGAGTCGCGAGGAAAGGTTCTGCAATGAGAACAGTCAGTGTCCGCTACCCATATTCTGGTCTCCGTGGGGGTCCTGGACTAAGTGCAGTTCGGAGTGTGGCGGGGGGGTCCACTCCAGGGTCCGCAACTGTGAAAATGGAAACAGCTGCCCGGGGTGTCCTTTGGAGTACAAAGCCTGTAACCTGGAGTCTTGCCCCGAAGTGAGGCGAAACACACCCTGGACCCCATGGATGCCGGTGAACATCACTCAGGGCGGGGCGCGGCAGGAGCAGAGGGTCCGCTACACCTGCCGGGCGCAGCTGCCCGACCCCCACGAGCTGCAGTTCGGCAAACGCAAAGTGGAAACACGCTTCTGCCCCAACGACGGCTCCTCGGCCTGCGAGACGGACACGCTGGTCGAGGACCTGCTGAGGAGCGGGCGGCCCCTGGCCCGAGCACCGGGCACCGGCTGGGCATCCTGGGAGAGCTGGTCCTCCTGTTCCCAGGACTGCGAGAAGGGCTTCCGCACCCGCAGACGCACCTGTGCCGGCCCTGATCCCAAGAGCGGCAGCCTGGCCTGCGCGGGATCGGCACTGGAGTACCAGGACTGCAACCCCCAGCCCTGCGCCGTGAAGGGGGCCTGGTCCTGCTGGTCTTCATGGTCCCAGTGTTCGGTCACGTGTGGCGGGGGGCACTACCAGCGCACTCGCACCTGCACCAACCCGTCTCCCGCCAACGGGGGGGACATCTGCCTGGGCCTGCACACCGAGGAGGCACTCTGCAACACCCACTCCTGCGAAGGCGGCTGGTCGGACTGGTCAGAGTGGGCTCTCTGCAGTGAAGACGGCCTGCAGACACGGAGCCGCTACTGCGAGGTCCAGAGCCCGGGCCTGGCCGAGTGCCTGGGCAACGCCACCGAGCACAGGGAGTGCCTCTACAACGAGATCCCAGTGATCCTGCCAGCCTCCAGTTTTGACAAGGACCTGCAGTGTGGAGgTTTCAGCCTCGTTCATCTCATAGCCACCGGAGTCTCCTGTTTCTTCGGTGCCAGTCTCCTGACGTTCCTGATCTACGCGTACTGCCAGAAGTTTCAGAAGCAGACCCAGGAGTCCGCGGTGATCCACCCGACGACTCCAAACCATCTGAACTACAAGGGGAACACCACGCCAAAGAATGAGAAGTACACTCCAATGGAGTTTAAGACGCTGAACAAGAACAATTTGATTCCGGATGAAAGGACCAACTTTTTCCACTCGCCTTTACAGCAGACCAATGTTTACACAACCACGTATTACCCCCCCACTCTGAACAAGTATGACTACAGGCCGGACTCATCTCCGGGCAGAACCTACACCAACAGCTGAGACACAATCATGGCTGCAGCTGGACCttaatctatctatatatatatatatatatatatatatatacagacaga

Function

GO: NA

KEGG:

id description
K06841 SEMA5; semaphorin 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000844 True 3383 mRNA 0.58 21 5221997 5265705

Neighbor

gene id symbol gene type direction distance location
AMCG00000841 adcy5,LOC107555914,LOC107660638,LOC107661140 coding upstream 106013 5081856 ~ 5115984 (+)
AMCG00000840 LOC107714401,LOC107596066,LOC107661140,LOC107555914,LOC107741932,LOC107660638 coding upstream 173913 5039948 ~ 5048084 (+)
AMCG00000837 LOC107580446 coding upstream 187300 5025295 ~ 5034697 (+)
AMCG00000832 NA coding upstream 358149 4844092 ~ 4863848 (+)
AMCG00000831 tnfaip6 coding upstream 383117 4833357 ~ 4838880 (+)
AMCG00000845 NA coding downstream 50492 5316197 ~ 5332706 (+)
AMCG00000849 NA coding downstream 131620 5397325 ~ 5404570 (+)
AMCG00000847 NA coding downstream 160456 5426161 ~ 5441254 (+)
AMCG00000857 NA coding downstream 207389 5473094 ~ 5487499 (+)
AMCG00000855 clasp1 coding downstream 231917 5497622 ~ 5556669 (+)
G126574 NA non-coding upstream 89041 5132374 ~ 5132956 (+)
G126573 NA non-coding upstream 90006 5131718 ~ 5131991 (+)
G126572 sec22a non-coding upstream 91336 5128507 ~ 5130661 (+)
G126570 NA non-coding upstream 94341 5127314 ~ 5127656 (+)
G126569 NA non-coding upstream 95189 5126559 ~ 5126808 (+)
G126621 NA non-coding downstream 84277 5349982 ~ 5350242 (+)
G126667 NA non-coding downstream 201277 5466982 ~ 5467528 (+)
G126697 NA non-coding downstream 304265 5569970 ~ 5571932 (+)
G126714 NA non-coding downstream 453563 5719268 ~ 5799635 (+)
G126781 map3k19,LOC106586307 non-coding downstream 935204 6200909 ~ 6201605 (+)
AMCG00000734 NA other upstream 3407840 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 3523424 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 3615966 1599696 ~ 1606031 (+)
G125561 NA other upstream 4818406 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 195596 5461301 ~ 5465981 (+)
G127134 NA other downstream 3351494 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 4834578 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 6733959 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 7023245 12288950 ~ 12385042 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_07131727_07169937 SEMA5BB coding CI01000024 null 7131013 ~ 7169937 (-)