AMCG00000848


Basic Information

Item Value
gene id AMCG00000848
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5461301 ~ 5465981 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000848
GAGAGAAGGAACAACGTGGTTAACGTTGTACTGGCGGTGCGGTGGGTAAGAcgattcatttttaaagacaaatacagtaaataatgaCAGAAGGAGGCTCCATCCCAGCTCCGGCGGCCAAGAACCTGCTCGCCTTGGACCCCAGCGAAGAGGCGGAATTCAAGAAGAAAGTACAAGAAGTGAAAAAGCGACCTAAGAAAGATGAAGACGTGACCCCTGGGGTGATCTATCTGGGTCACATCCCCAAGGGCTTCTTCGAGCCGCAGATCCGCAAATACTTTGAACAGTTCGGCAAAGTGCTGAGGCTCCGGCTGTCCAGGAGCAAGAAGACAGGTGGAAGCAAGGGGTATGCATTTGTGGAGTTTGAGTGCGATGAAGTGGCAAGGATTGTGGCAGACACTATGAACAATTACCTCCTCGGTGAAAGACTCATCAAGTGTAGTTTCGTCCCCGCTGAAAAAGTGAAACCAGGGCTTTTCAAAGGAAGTGAAACTCAGTTTAAGAAGCCCACCCGGCCGGCAGTGAGACGCTACAACAAGAACCGCACACCTGTGGAGACGGAACGGATGACCAGCAAACTGCTCCAGAAAGAAGCAAAATTACGGAAAAGGCTGGCGGAGAAAGGAATCGATTACGATTTCCCTGGATTTgtggCCACTGCACCAAAGAAGACGAAAACAAGCAAAGACAAAGGAAACGTGTCAATTTGCAGTCAAGATGTGACCCCAGTCTGCACACCCACTGTAATAGAGCGGAGGAAGTCAGTGAAAGTAGATGAGGATGACGACGATGAAATTGTAATCAAAGCGACTCCTGCACCAAAGACTGCAAAAGGCAAAAACAAGGGAAAGAAGAAATCCTCAGtgaaaaagacaacacaaaaatgaaGCTAATGactgattatttttatatggacCTGATCATAAGGCTTTGACCTTTGATGGAATTTGATGGAATGTTTTGAGGTCTTGCCTTAAactgtttattacattttttggatgGGAGGGAGTGATATACCCAGCTGAGGAAATCAAGAACCCAACTGCAAACTGAGACATAAATGTGCCAATCATTTTGCCTCCGTATCATACAGAGATAATTTGAAAGCCTGCCGTTTTAGCTGAATGGTTTCATATTTGCCTTGTGGCATACAAATTTTCGTATTCTTTCCCCGAGGATAttttcaattaaggcaaaagCATATTAATCGGAAGGATTGTATTGTTAATGCACAAATTATATAGATATGATATAGGGTTCTGAGAGTAAAGGTCTACAGGTGTATCACATATTGGAACTACCCTTGTGAAATTCATAAATACTTGTATTCCTTTTATGTTTCTAAGTTTTTAAACAATCTAAGAGCAGTATTTAAATTTAGATGTAACAGTTGGACAGATGGTAAATAATTCAGTGCCctataaaacattaatggaacataataaaaacattatttgaaacaTGAATCTCAGCACATTAAGAGTTCTTGccaaaattatatttgtggtttattttgtcatgtttttccttttcttgtcaGTGGTCTTGCATACATATCAGGTTTAATTAACCTATTTACCTATATAGGGGTCTCCATTGCTCATATATAAACaggtttttatatttgattgtaACAGTAACCACTAGGAAGAGCAGGGCCATATGTGTAAGTCTGGGTTTGATCCAGTGTGAATTATGacaaattatgatgtttttttgaaAGATTGAGCAGCTGGAATCACAGCATGGCATATTCTGACTACCTCCCAGCATCTTTCACTGCATTTGAATTGTACTGACCTGCTCTcgtgtttattaatattaccaCAAGAGGGAGCTACACCTAATGGAAGATTAAATGTATAACAAGAAACCTATTTCACTCTATTAACAGGAAAGTACAGTAGTTGCAAGACTGAgtcgtgtgtatgtatgtatattgagaATTATGTACACTACTcatcaaaagttttagaacaccttaatttttccagtttttattgataattatgcagttcaatgtactctgaaattaaagtctagaacaaataaacaattggagataaaaaataaataatggaatagttttgtttaacaaattttatacacatttttgaCTCATCAAagtagccaccttttgcagataTAACAGCCAAACACTCCTGGCATtcttctacaatggaaatcaaatattgttctgaaagttcttcccaacacgattgcagaagttcccacagatgtgttgcacttgtacgttgctttgctttcacccttctgtccagttcatcccaaaccaG
>TU158802
ctttcacccttctgtccagttcatcccaaaccaGCTCAATGGGGTATAAGTCTGGAGACTGTGCTGGCTATTACATGATTTGAAGCCTActgtcttgttcttttcttctaagGTAGTTCTGACGTAGCCCAGAGGTATGTTTTGGGTAATTATCTTGCTGTAGAATGAACCCTTGACCAACTAGGTGTATACCAGAGGGTACtgcattttgcagcgccatgcagtggtagccattttggttcagggtgccattCACGTcgccgactctggatccagcaaaagatccccagaccatcaccttCTCCATGTTTAACAGTtgatgtcacacactgaggaaccatcctttcgcctACTCGACAGTGTAGAAAAACCCAACGTGATGAaccaaagatttcaaattttgattcttcagtccataagaccttcttccagtcttcagtattccactggtggtgcttcatggcccagacaagcctctttttcttactTTGCCAtctagcaatggctttcttactgccactccacctgtcaaacctgcaactcaaagtcttctcttcacagttgaaactgagacttgcttacttcgaccagtgttaagctgtgcttgaagctgttgtcctgtgagctgcCTATCACGCAGCTGCCTATcgagctgttgactctcagaaacttgtcttcttcCTCtattgtggctttgggtctgccagacctcttcctgtcagagtttcctccagtttccaagtgccttttgatggtgtaggaaactgtactcactGACACCCTGGttttctttgcaatttctctAAAGGAAATACCTACACTTTTAAGGGTTAtaatggtctgtctgtcttcctttgTTAACTGCTTTTTTGTAGCCATTATGATAGTGTAACCCAGTACTAATTAACCTGGATGCTAGAATTTTATTATTCAGGGTCTGAGATCActaacatattaaaatacatatattataatgtcTTGGGTTtcaaagaaaggggaaaaaaactaaaaacatttagtttcatattgatttaaaagagGGATTACACATAgtacataaatgtatttcaataaggtcatatatatacaccgatcagccataacattatgaccacctgcctaatattgtgt

Function

GO:

id name namespace
GO:0010923 negative regulation of phosphatase activity biological_process
GO:0007275 multicellular organism development biological_process
GO:0005730 nucleolus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14838 NOP15; nucleolar protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000848 True 2297 mRNA 0.39 6 5461301 5464884
TU158802 False 1131 lncRNA 0.42 1 5464851 5465981

Neighbor

gene id symbol gene type direction distance location
AMCG00000847 NA coding upstream 20047 5426161 ~ 5441254 (+)
AMCG00000849 NA coding upstream 56731 5397325 ~ 5404570 (+)
AMCG00000845 NA coding upstream 128595 5316197 ~ 5332706 (+)
AMCG00000844 NA coding upstream 195596 5221997 ~ 5265705 (+)
AMCG00000841 adcy5,LOC107555914,LOC107660638,LOC107661140 coding upstream 345317 5081856 ~ 5115984 (+)
AMCG00000857 NA coding downstream 7113 5473094 ~ 5487499 (+)
AMCG00000855 clasp1 coding downstream 31641 5497622 ~ 5556669 (+)
AMCG00000856 NA coding downstream 91470 5557451 ~ 5568381 (+)
AMCG00000859 NA coding downstream 351140 5817121 ~ 5824643 (+)
AMCG00000862 LOC107551943,LOC108430494,LOC107663912,LOC107733654 coding downstream 473630 5939611 ~ 5949304 (+)
G126621 NA non-coding upstream 111059 5349982 ~ 5350242 (+)
G126574 NA non-coding upstream 328345 5132374 ~ 5132956 (+)
G126573 NA non-coding upstream 329310 5131718 ~ 5131991 (+)
G126572 sec22a non-coding upstream 330640 5128507 ~ 5130661 (+)
G126570 NA non-coding upstream 333645 5127314 ~ 5127656 (+)
G126667 NA non-coding downstream 1001 5466982 ~ 5467528 (+)
G126697 NA non-coding downstream 103989 5569970 ~ 5571932 (+)
G126714 NA non-coding downstream 253287 5719268 ~ 5799635 (+)
G126781 map3k19,LOC106586307 non-coding downstream 734928 6200909 ~ 6201605 (+)
G126782 NA non-coding downstream 737717 6203698 ~ 6206033 (+)
AMCG00000734 NA other upstream 3647144 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 3762728 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 3855270 1599696 ~ 1606031 (+)
G125561 NA other upstream 5057710 339640 ~ 403591 (+)
G127134 NA other downstream 3151218 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 4634302 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 6533683 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 6822969 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 9684294 15150275 ~ 15184392 (+)

Expression


Co-expression Network