AMCG00000849


Basic Information

Item Value
gene id AMCG00000849
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5397325 ~ 5404570 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000849
CGCGGCTCAGTGACGTATGCAGTTGCTTTAGATACGTAGATcgcgttttgttttgttttgtttctggtttGAATGGAAAAGTTCTAAAGAACACACCATgaataaatcagaaaatgaacaagagGCGGTCCATCCTGAAATACTGTCTTTAGCTGCTGAAATTGCGGATTGTACGCGAGAAGATTTGCCACTtcttcttttgaaaataaaagACATTTTAGATAAAGAATCACTGGGGAGTAAACAGctggaaaaactgaaacaagACATCTACTCCTATGACCTCATTCAGTATTTTATGCTAATCTTAAAGCAAGATATCTCTAGAATTCAAGGTGGCTGGTCAACTGCTGTTCAGTTAGCAGAACTCTTAAGTCTGTGTTGTGTGGATCTGGATCctaaagaagaaaagaaggaatTTTATGACAATGTTCTTCCTGCAGCAGCCGACTCTATGTTACTGCTGGGAAGACACTTGCAGGCACGGTTCTACGTTGCTGTCAAGGATGAACAAAAAGCGTCCTTATTTCGCAACCTTCGCAAAGTGACCAACTCCATTTGTTGCCTGTGCAGAGGACACATTCCgttaattaaaacaaCTCTGCAGTCGGATCATTTTCTGCAGTTAATGCTGAGTGAAGATGTTGAATCTGACATCGTCGTGTTGTCACTGTTACAAAATCTTCTCAGAATTAATAGcGTGGTTCCGATGGAAATTGCGGAGAAAACAGTGGAGGACTTTTCAGATGAGCTCATTTTCAGACTCATATCAACAAACAATCCTGTGGTTGGAAGTGCCGCCACAAAGGCACTCGTTTTACTGGCAAGCAGTCCTGCCATAAAGACCATCTGTAGAAAGTATGAAGGTTCCCGCTTTCCCTTGAGAGAGAAATGGACCGGAAAAGGTTTTGACAAAGAACTTGGTCAGCTTTTGGAGCTACTCCATGCTGCATCACACCAGCCAGGGGAAGTGAAGAGATTACATCAAGCAGCATCGTTGATCCAAGCAGCCTGGAGATCCTATAAGACGAGAAAACGAATGAAAAAACTCCCAAGTGCCGTCAGTAGAATTCAGAAGAGTTTCCGAGAGCGGAAGAAGCGTGAATCTCTGCTGTCCCAGAGGCAGAAGGAGGCACAGGAACTCAGACAGCAGCTGCAGCTCAGCAGACAGAGAGCCCTGCGGGAGTTCAGACAGAGACAGCTGGACCTGCTGGAGATAGTCCCCGCAGGTCTGGTGGACCGGTTTTTACATGAACAGGAACAGAGGGCTGCAGTCGTGATCCAGAAGCAATGGAGGGGCCACAGAGAACGCAGGAAATTCCACCAGCAGAAGCAGGCGATGAAAGAGTTTAAGGCCGCCGTGACTTTACAGAGAGCATCTCCTTCAGTGTTGATTGACAGCTGTAAGGAACTCCATCAGCAGACACAAGAAATGCTCAGACAGCATCTGATGAACCGGACGCTACACCGGAAGGCAGAGCAGCACCGGAAGTCACTCATTACACAGATTAACAGTGAAGTGGACCTGCTAATGAatgctccaggtttgaaagACGCTACAGAACAAGACATCAGCAAGTTCATGAGCCGGAGTGTTCCTGTGGCAGCCCGAGCCAAGCAATCCCACAACACCTTGCTTCAGTTCAATCGCTGGCCCTGGTGGAAGAAGCTCGGAGACGAATTTCTGGACCCTGAACAATTACCCAAAGATAACATGAATATTGATTTTGAGACATTGTACTTGGGTGGTAGCTGATGAACTTGATGATGCGCATTCTAATAATCTAACAAAACCTCAGTGGATATCTCTgacatttaattactttttatctGCTCTTTGTCTCGTGTTTTGTTCCTGTGTTCATTGAATTTTTAAGACTTCGAGTTAGGTAGGATGGTAATTTCTAACATAACTAGCTACATTTTGACATGTAAATATGCATAGAACATATTTTGTACGTATTAATCTTTCTCCACTCTTTTTAAGTTAAattgtacagtattattatgtgataaattattttatataaaactgcatattgtttttatctGATTAGAATGATTTCTGTTTAATACTTCCTTCAGTGTACAGAATAGTGTCTTCACAAGATCCCTTATATGGCTTAAAACATTAACAGGACATTAAACATTTCATAGCCAC

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0036372 opsin transport biological_process

KEGG:

id description
K16774 IQCB1, NPHP5; IQ calmodulin-binding motif-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000849 True 2161 mRNA 0.43 13 5397325 5404570

Neighbor

gene id symbol gene type direction distance location
AMCG00000845 NA coding upstream 64619 5316197 ~ 5332706 (+)
AMCG00000844 NA coding upstream 131620 5221997 ~ 5265705 (+)
AMCG00000841 adcy5,LOC107555914,LOC107660638,LOC107661140 coding upstream 281341 5081856 ~ 5115984 (+)
AMCG00000840 LOC107714401,LOC107596066,LOC107661140,LOC107555914,LOC107741932,LOC107660638 coding upstream 349241 5039948 ~ 5048084 (+)
AMCG00000837 LOC107580446 coding upstream 362628 5025295 ~ 5034697 (+)
AMCG00000847 NA coding downstream 21591 5426161 ~ 5441254 (+)
AMCG00000857 NA coding downstream 68524 5473094 ~ 5487499 (+)
AMCG00000855 clasp1 coding downstream 93052 5497622 ~ 5556669 (+)
AMCG00000856 NA coding downstream 152881 5557451 ~ 5568381 (+)
AMCG00000859 NA coding downstream 412551 5817121 ~ 5824643 (+)
G126621 NA non-coding upstream 47083 5349982 ~ 5350242 (+)
G126574 NA non-coding upstream 264369 5132374 ~ 5132956 (+)
G126573 NA non-coding upstream 265334 5131718 ~ 5131991 (+)
G126572 sec22a non-coding upstream 266664 5128507 ~ 5130661 (+)
G126570 NA non-coding upstream 269669 5127314 ~ 5127656 (+)
G126667 NA non-coding downstream 62412 5466982 ~ 5467528 (+)
G126697 NA non-coding downstream 165400 5569970 ~ 5571932 (+)
G126714 NA non-coding downstream 314698 5719268 ~ 5799635 (+)
G126781 map3k19,LOC106586307 non-coding downstream 796339 6200909 ~ 6201605 (+)
G126782 NA non-coding downstream 799128 6203698 ~ 6206033 (+)
AMCG00000734 NA other upstream 3583168 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 3698752 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 3791294 1599696 ~ 1606031 (+)
G125561 NA other upstream 4993734 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 56731 5461301 ~ 5465981 (+)
G127134 NA other downstream 3212629 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 4695713 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 6595094 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 6884380 12288950 ~ 12385042 (+)

Expression


Co-expression Network