AMCG00000850 (eaf2,LOC106586422)


Basic Information

Item Value
gene id AMCG00000850
gene name eaf2,LOC106586422
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5392602 ~ 5396386 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000850
CGGAGGGGTGAGGGGTCTTTACTGCCATAGAAGGTATCGAATGGCAGCGGAAAGTTACCTGTTTGTAACATATGGTAACAAACTTTTGTGAGAATGAATGGAGCGGCTTACTCTAACTTTGACAATAAAGAGCACATCCTGAAATTAGGCGAAACATTTGATAAACAGCCCAAATGCGCTTTCCACACTGTGCGATATGACTTCAAGCCTGCTTCTATTGACACAACATGTGAGGGCGAGCTTGAGGTGGGAAAGGGGGAGCAGGTGACAATAACGTTGCCGAACCTTGAGGGTTCCACCGCTCCCATGACAGTATTCAAAGGTTCAAAGAGGCCTTATATGAAAGAATGCATCCTCATCGTGAACCACGACACTGGAGAATATCGCCTCGAGAAGCTCAACAGTAACATAGCCGTGAAGAAAACCAGGGCTGAAGGGAGCAGTAAGATCCAGTCTCGGCTGGAGCAGCAGACCAGTCGGCTCAGTCAGCAGGtgagaaacagcagcagcagcagtggcggcggcggcggcggcggcagcagcagcagcagcaaggcCCCTTCAGCCTCCAAGAACTCCCCCCCAAAAGAGAAGATGTCTCCCGCCTCTCCTATGGATGACATTGAGAGAGAGCTGATGGCCGAGGCGCGTGTCATGGATCAGCTGAGCAGCGGAGACAGCTCGTCCGACTCCAAgagctcctcctcctcttcctccagcagCGACGACGGCTCCAGCAGCAGCGACTCCGAGGACGACCGGCACAGACCGGCTGGGCCCTCCACTCTGCCCTTCCCCCCTGTGCCGCAGGGCATGCCCATCCtgaccaccaccaccaccagcagcagcagcagcagcagcaaccgGCCCGAGGAGGGCGGTGGGCATCTCATGAATACTCTCCAAAATGATCTCCAGCTCAGCGAGTCTGGGAGTGAAAGTGAAGATGACTGATCTCAAAGGACAGTGGCAAGAGACTGCATTACCATCAGGGTTAGAGTTGCCCCACAGATGCTCGAAACCGGAAAAGCAAGATGCCAGCAGCCCTAGCAGAACagtgaaagcaattaaaaattatGCCTGTTAAAGTAACTACTTCCTGTCTTCTCCCATtctcaacatttatttattttttaatgtaggtAAGCATCTAAACTTAATGTTTTCTGTGAGAAGGGGCACGTCTTTGGAGCTGAGAACATATTAGGCATATTAGGCCTGTGGGAGAAGTGGTTCCTTCAAAACAATACGTTGACTAATCGAATAATATCTTCTTATGAAAGCCTATGAATGTTTACATAGAGAGCATAGTAGTCCATTGCAGTCAGTCTTGAAAGCATGTACATCGACCGAATATCATTCATACTTCAGCTGATGACATCTTAATTGAAGGACTTTATaggctgcttttttttttttattaataaatattggtAAATTCTATAGTGCTACATATCAGTTTCTCTATAGGATTTTCTACAAGGTGTTTTAGCTCTTTTGAGTAAGCACATAATGAAATATGCATATGTGAAATTGGGCTTTGAACTTGACTGAAGGTGCTGCAGGATTGTAGCTTTTGCTTCTTGTTTAGTATCAGAGATTTGAATTCATCACTTTCTGACAGGTTTGTTTTAACAGCTTGATGACAGGACACTGACTGAAGAAATGCTAGTAGTCCACAATATAAGGGATTTTGTGGACattgtgtatgcatttttgaagattttgaagtctcttttttttctactgTGGTTGTTACATATCAAAGCCAAACttggaagaagaaggaaaaaaagccaATGCACTACTACTTGAAGTTTGataattttgtgaaaataaaaatgtcaattttcAATGACCAGGTGTGTCTTTTACGATTTTGCTTCTTGGCTTGGCCTCTAAAACCTGTGATACTTGAATTTGTCTTATTACACATGATTATATGAGTGATATGTACATAATATATAAGAATGATCACTATTTTCCTGCCTATGATTTAATGATCATTCtgcttacaaataaaatataatttagcaaactgtgatatatatatgtaattaaaataagtggatattgtggtggtggtggtggagaaaACTActaaatgtaatgcttttattCCCTTTTGATGTATAGACAGACTTTCATATTCTTGAACTCTGAATTTTCTCCtcttttcaatgttttgattgtATCTGTCAAGCACTGAACCTTACACGTTCATTGTCAAAGACAGATATTGTCATAAATGCTCTTGCTGcacttcaaagaaaacaaagccacaTATTAAATGAAATGGCATGAGTCTGAAGAACCTGAAAGAAAGTCTGTTGGCTGGTAAATGCTTAACAATGTGCTAGACTTCAAATTCATTGTACAGGcgaataaagattttaaatccAT

Function

symbol description
eaf2 Enables armadillo repeat domain binding activity and beta-catenin binding activity. Acts upstream of or within several processes, including cell migration involved in gastrulation; convergent extension; and muscle cell migration. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Is expressed in several structures, including blastoderm; blastodisc; nervous system; pleuroperitoneal region; and presumptive neural retina. Orthologous to human EAF2 (ELL associated factor 2).

NR:

description
ELL-associated factor 2

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0016477 cell migration biological_process
GO:0050794 regulation of cellular process biological_process
GO:0060026 convergent extension biological_process

KEGG:

id description
K15186 EAF; ELL-associated factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000850 True 2403 mRNA 0.43 6 5392602 5396386

Neighbor

gene id symbol gene type direction distance location
AMCG00000852 NA coding downstream 773 5381140 ~ 5391829 (-)
AMCG00000854 NA coding downstream 22447 5354386 ~ 5370155 (-)
AMCG00000846 dirc2 coding downstream 76506 5279544 ~ 5316096 (-)
AMCG00000843 pdia5,LOC107596065,LOC107555900,LOC107661141,LOC107660642 coding downstream 218192 5137957 ~ 5174410 (-)
AMCG00000842 sec22a,LOC107722877 coding downstream 259758 5121107 ~ 5132844 (-)
AMCG00000851 tsn,LOC107555354,LOC107686515,LOC107555051,LOC107658218 coding upstream 43644 5440030 ~ 5446252 (-)
AMCG00000853 LOC106586425,LOC108266238,LOC103360348,LOC102795313,LOC101468032 coding upstream 53674 5450060 ~ 5460804 (-)
AMCG00000858 NA coding upstream 203563 5599949 ~ 5639241 (-)
AMCG00000860 inhbb,LOC106575190,LOC108411664,LOC106574263,LOC105019970,LOC108270543 coding upstream 385966 5782352 ~ 5789779 (-)
AMCG00000861 ralba,ralb,LOC107746258,LOC107597482 coding upstream 402995 5799381 ~ 5811882 (-)
G126631 NA non-coding downstream 20143 5372249 ~ 5372459 (-)
G126563 NA non-coding downstream 273566 5116054 ~ 5119036 (-)
G126554 NA non-coding downstream 357905 5013868 ~ 5034697 (-)
G126476 NA non-coding downstream 614818 4773581 ~ 4777784 (-)
G126445 NA non-coding downstream 683751 4703139 ~ 4708851 (-)
G126665 NA non-coding upstream 66181 5462567 ~ 5464052 (-)
G126698 NA non-coding upstream 173558 5569944 ~ 5572133 (-)
G126767 NA non-coding upstream 547000 5943386 ~ 5949894 (-)
G126873 NA non-coding upstream 938327 6334713 ~ 6335866 (-)
G126887 NA non-coding upstream 984577 6380963 ~ 6381248 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 409951 4957138 ~ 4982651 (-)
G126427 NA other downstream 756086 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 1736041 3553047 ~ 3656561 (-)
G126096 NA other downstream 2243350 3131714 ~ 3149252 (-)
G126700 NA other upstream 176319 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 1293182 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 2233529 7629915 ~ 7645722 (-)
G127292 NA other upstream 4022610 9418996 ~ 9419325 (-)
G127443 NA other upstream 4878301 10274687 ~ 10278211 (-)

Expression


Co-expression Network