AMCG00000852


Basic Information

Item Value
gene id AMCG00000852
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5381140 ~ 5391829 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000852
TCGGTCCTGGCAACGCCGTGAGTGAGTTCAGGAAACCCGGGTTTATTAGCGGTCAGCAATACAAAACCTCATCTCTCAGACAAACACAGCACGTCGGCAGGACGCAAGGGGCTGCGAGGATCACGGCATTGCATCCCCAGCTGGCTTGGTTTCGTGTCTTGATCTGTGCGTTATGAtgtttttcaaactgtttttgAGGAGCGGATCTCAGGTCTGCAGACTGCAATGTGAGCCGGCGCTGAGGAGCGTCCTGTCCCGCCGCAGTCCTGCGTCTTCCTCCGCCGCGTTGTCCAAGATTAAAAGCATGGATGAACTGCAGGGACCCAGCTTCATGACATCTTTGTATTGGCTTTTCGTGAAGGGATACTTCAATAAGACCCACCAGATGCAAATTGAGCACACAAAGATCTACGGCCCCCTGTGGAAGTCCAAGTACGGCCCCTTGGTGGTTGTAAACGTGGCGTCCGCCGAGCTGATCGAGCAGGTGCTGCGGCAGGAGGGGAAGCACCCGATCCGGTCGGACATGCCCCACTGGAGAGGCTACCGGGAGCTCCGCAAACAGGCCTACGGGCCCCTCACTGGGTTGGGGGCAGAGTGGCAGTGCATCAGAAGTGTACTGAACCCACGGATGCTGAAGCCAAAGCATGTGTCCACCTTCTCCCCCGCCATCAACCAAGTGGTGACAGACTTCATCCAGAGAGTGCAGTGGCTCCGAGAGAAGCAGGAAGGCGGGGTTATGGTGCATGATGTGGCTGGGGAACTCTACAAATTTGCATTCGAAGGAATTTGCTCCGTGCTGTTCGAGACCCGAATGGGCTGCCTCAATGAACACATTCCAGAGGAAACCCAGAAGTTTATCGACTCTGTGGGAGAGATGTTTCGCTTGTCTCCAATCTTAGTGCTGTTTCCTCAGTTCCTTTGGCCCTATCTGCCCTTCTGGAAACACTTTGTGGCAGTCTGGGACCATCTGTTCAAAGTTGCCCAGAAGTTGATTGACAACAAGGTGATTGAGATCCAGGAGAAGGTCAATAAAGGTGAGCCAATTGAGGGCGAATATCTGACCCACCTCCTGGTCAGTGACAAGATGTCCATCACACAGATCCTGGGAAGCATTACGGAATTGCTGCTGGCTGGCGTGGACACAACATCCAACACCATTTCATGGGCGCTGTACCACCTGGCACGAGAGCCAGAGATACAGGAAAAACTGCACCGGGAGGTGGACAGTGTTTGCCCAGGAGATAAAATACCCACAAGCGAAGACATTGCCAAGATGGTGTGGTTAAAGGCAATAGTGAGAGAAACACTAAGACTGTACCCGGTTGTGCCAGGTAATGCCCGAGTCACGGCTGAAAAAGAGATTGTGACTCTCTTCCACCTCTGTCACTATGCTGTGTCCTACGATGAGTGCAACTTCCCCGAGCCTCAGACCTTCCTGCCTCAACGCTGGCTCCGAGGAGAGGAGAGGTTCAAGCAGCACCCATTCAGCTCGGTGCCCTTCGGCTTTGGCATCCGGGCCTGCTTGGGCAAGAGGGTGGCTGAGCTGGAGATGTACTGTATTCTGTCCCGGcTGATGAAACACTTTGAAGTTCGCCCTGATCCTTcgggaaaaacagtcaaaccGATAACCAGGACTCTCCTCGTACCCGGGACACCTATCAGCCTGCAGTTTCGGGATAGGAGATTGAAGCAATCagagtaaataaagaaaaacaaaaagtaacaaCATATGGGCACTGTTTAAACATGGTAGCGTTTTATAGTGTTTAGTGTTTATTCTGTTACTAAGTTAATTAAAACTGCGTGAAGGGAAGCAGCTGAGAGTTGAATTCGCCAATTTGTCTCAGTTGACCAAACGACTCTTAAGATTCAAGCACGGCACTGCCCGTCTCTGCCTCTTCAAACGCTGTCATTTATACGATATTCATATAAATCATCCAGCATAAAAAATGCtattgattaatatatttttgtgttcgTTTTGTGACTGACTCATTTTATAACACAataatccatatattttatggtaatttgctGTTCCGGGTGTTGCTCTAGCGCTGACAGGACTGCTGTGCTGTAGATGCTGTCAGACAGGTATGAATTTCTTTCCCAAATATTGCTCTTTCATAGTCCATGTGGGTCGGCAATAAGGAGATTGAATGGTGTGAGATTTAGCTGAACCTTCAAGCTCTAAGCCACTCTCTAGAGTAGCCAGGTTAAAATGGGATTTTGCAGTAAATAAGgggagaaatgtattaaaagacaGAAGTTTTTTAGATTCCAGTGCTAGGCTTATGTAGTATTagaataatgtatattaatgtttgaaaaacCATGTAAACCATGTTGAATTAAGTAATCTGTTACACAGCTTtacaatcatcatcattaccATCGTAGATTAGTCAGAAATGTGTATGTTGAAGTCAGTTTTTCCTAACTACATTCTGCGATTTTGCACCTGATTTTCCAGATGTCTCTTTTAAATGTGCCAAGACAGGAAGTGACATCTGTTCGATCTGTTAgtgttcctgttttttcttaTCTAACTATCTCAAAAcatcatttgatatttttaagaCGAGACATTCCAAAGCAAACACGCATTCCTAGAATGAATAACCATACATAGCCTGGATAATGATCCTATAATAATAGGTCGTTAATGTATATCAGTGAGGTTtacaaaatagacaaaatagTTTGCTTATAGAATAATAGATGcttgttaatttgttattctGAGAAGTGTACCTTGGAAAATGGGTTTTGGACctttcaagttttattttggtatttagttgaattgtttagtttttactgACAAACAAAAAGGAGTAAGTGCCTGAAAGTATGTATTATGCATTacattgtgtatgtttgtaatAATGCCAGTGTTCACATTTAGAATGATATCAAAATAACCCCAATAAAGTCACTTCAAAGAGAAATCTGTTTTAtgatcaaaatgcatttcatgagCTTAAGTGGTAGATCATTG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K17960 CYP49A; cytochrome P450 family 49 subfamily A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000852 True 3001 mRNA 0.45 9 5381140 5391829

Neighbor

gene id symbol gene type direction distance location
AMCG00000854 NA coding downstream 10985 5354386 ~ 5370155 (-)
AMCG00000846 dirc2 coding downstream 65044 5279544 ~ 5316096 (-)
AMCG00000843 pdia5,LOC107596065,LOC107555900,LOC107661141,LOC107660642 coding downstream 206730 5137957 ~ 5174410 (-)
AMCG00000842 sec22a,LOC107722877 coding downstream 248296 5121107 ~ 5132844 (-)
AMCG00000839 NA coding downstream 356249 5014369 ~ 5024891 (-)
AMCG00000850 eaf2,LOC106586422 coding upstream 773 5392602 ~ 5396386 (-)
AMCG00000851 tsn,LOC107555354,LOC107686515,LOC107555051,LOC107658218 coding upstream 48201 5440030 ~ 5446252 (-)
AMCG00000853 LOC106586425,LOC108266238,LOC103360348,LOC102795313,LOC101468032 coding upstream 58231 5450060 ~ 5460804 (-)
AMCG00000858 NA coding upstream 208120 5599949 ~ 5639241 (-)
AMCG00000860 inhbb,LOC106575190,LOC108411664,LOC106574263,LOC105019970,LOC108270543 coding upstream 390523 5782352 ~ 5789779 (-)
G126631 NA non-coding downstream 8681 5372249 ~ 5372459 (-)
G126563 NA non-coding downstream 262104 5116054 ~ 5119036 (-)
G126554 NA non-coding downstream 346443 5013868 ~ 5034697 (-)
G126476 NA non-coding downstream 603356 4773581 ~ 4777784 (-)
G126445 NA non-coding downstream 672289 4703139 ~ 4708851 (-)
G126665 NA non-coding upstream 70738 5462567 ~ 5464052 (-)
G126698 NA non-coding upstream 178115 5569944 ~ 5572133 (-)
G126767 NA non-coding upstream 551557 5943386 ~ 5949894 (-)
G126873 NA non-coding upstream 942884 6334713 ~ 6335866 (-)
G126887 NA non-coding upstream 989134 6380963 ~ 6381248 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 398489 4957138 ~ 4982651 (-)
G126427 NA other downstream 744624 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 1724579 3553047 ~ 3656561 (-)
G126096 NA other downstream 2231888 3131714 ~ 3149252 (-)
G126700 NA other upstream 180876 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 1297739 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 2238086 7629915 ~ 7645722 (-)
G127292 NA other upstream 4027167 9418996 ~ 9419325 (-)
G127443 NA other upstream 4882858 10274687 ~ 10278211 (-)

Expression


Co-expression Network