AMCG00000860 (inhbb,LOC106575190,LOC108411664,LOC106574263,LOC105019970,LOC108270543)


Basic Information

Item Value
gene id AMCG00000860
gene name inhbb,LOC106575190,LOC108411664,LOC106574263,LOC105019970,LOC108270543
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5782352 ~ 5789779 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000860
ATGAGAAGATACATAGTCTGTTTGGTGGCTTGCGTGCTTTCTGTCCGCTGCACCCCGGCCCCGGGCACCGAGGCGCAGACCGCGTCCCAGGATACGTGCGCCTCCTGCGGGCTCGGGCAGCCAGAAGAGTCGGGGCGGGTGGACATCGACTTCCTGGAGGCGGTGAAGAGACACATCCTGAACAGGCTGCAGATGAGGGAGAGACCCAACATCACCCACCCCATCCCCAAGGCGGCCATGGTCACCGCTCTGAGGAAGCTCCATGCGGGCAAAGTGAGAGAGGACGGCAGGGTTGAGATCCCCAACCTGGATGGACACGCCACCTCCAACAACGAGGTGCAGGAGCAGACCTCGGAGATCATCAGTTTTGCCGAATCAGATGAGCTGGTATCATCGAAGTCAAGCCTCTACTTTCTGATCTCGAATGAGGGGAACATGAACCTGTTAGTCTCTCAGGCCAACTTGTGGCTGTACTTCAAAGTGCTGCCTGGGAACTCGGAGAAGGGCACCCGAAGGAAAGTAACGATCAAGGTGTATTTCCAGGAGCCTGGCGCCGGCAGCAAGTGGAGCATGGTGGAGAAGCGCGTGGAGCTCAAGAGGAGCGGCTGGCACACCTTCCCCCTGACGGAGGCCATACAGACCGCCTTCGAGAGGGGAGACCGGCGGCAGAACCTAGACGTCCGCTGTGAGGGCTGCGAGGAGATGGCGGTCCTGCCCGTACTGGTCAACCCCGACGACGAGTCGCACCGGCCCTTCCTGGTGGTCCAGGCCCGGGTGGCGGACAACAAGCACCGCATTCGCAAGCGGGGGCTGGAGTGCGACGGCACCACCAACCTGTGCTGCCGGCAGCAGTTTTACATTGACTTCAGGCTCATCGGCTGGAACGACTGGATCATAGCGCCCTCGGGGTACTTCGGGAACTACTGTGAGGGCAACTGTCCGGCCTACATGGCGGGCGTCCCCGGCTCGGCCTCGTCCTTCCACACGGCCGTGGTCAACCAGTACCGGATGCGAGGCATGAGTCCCGGCTCCATGAACTCGTGCTGCATCCCCACCAAACTCAGTACAATGTCAATGTTATACTTTGACGACGAGTATAACATCGTGAAACGAGACGTGCCCAACATGATCGTGGAGGAATGCGGTTGCGCTTGA

Function

symbol description
inhbb Predicted to enable cytokine activity. Predicted to be involved in SMAD protein signal transduction and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in fin; heart; ovary; and testis. Orthologous to human INHBB (inhibin subunit beta B).

NR:

description
PREDICTED: inhibin beta B chain

GO: NA

KEGG:

id description
K22687 INHBB; inhibin beta B chain

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000860 True 1155 mRNA 0.60 2 5782352 5789779

Neighbor

gene id symbol gene type direction distance location
AMCG00000858 NA coding downstream 143111 5599949 ~ 5639241 (-)
AMCG00000853 LOC106586425,LOC108266238,LOC103360348,LOC102795313,LOC101468032 coding downstream 321548 5450060 ~ 5460804 (-)
AMCG00000851 tsn,LOC107555354,LOC107686515,LOC107555051,LOC107658218 coding downstream 336100 5440030 ~ 5446252 (-)
AMCG00000850 eaf2,LOC106586422 coding downstream 385966 5392602 ~ 5396386 (-)
AMCG00000852 NA coding downstream 390523 5381140 ~ 5391829 (-)
AMCG00000861 ralba,ralb,LOC107746258,LOC107597482 coding upstream 9602 5799381 ~ 5811882 (-)
AMCG00000864 NA coding upstream 32759 5822538 ~ 5856287 (-)
AMCG00000863 NA coding upstream 71066 5860845 ~ 5892754 (-)
AMCG00000865 NA coding upstream 132992 5922771 ~ 5923706 (-)
AMCG00000866 NA coding upstream 195325 5985104 ~ 6010417 (-)
G126698 NA non-coding downstream 210219 5569944 ~ 5572133 (-)
G126665 NA non-coding downstream 318300 5462567 ~ 5464052 (-)
G126631 NA non-coding downstream 409893 5372249 ~ 5372459 (-)
G126563 NA non-coding downstream 663316 5116054 ~ 5119036 (-)
G126554 NA non-coding downstream 747655 5013868 ~ 5034697 (-)
G126767 NA non-coding upstream 153607 5943386 ~ 5949894 (-)
G126873 NA non-coding upstream 544934 6334713 ~ 6335866 (-)
G126887 NA non-coding upstream 591184 6380963 ~ 6381248 (-)
G126977 NA non-coding upstream 1330465 7120244 ~ 7125041 (-)
G127145 NA non-coding upstream 2848817 8638596 ~ 8639883 (-)
G126700 NA other downstream 209325 5572705 ~ 5573027 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 799701 4957138 ~ 4982651 (-)
G126427 NA other downstream 1145836 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 2125791 3553047 ~ 3656561 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 2641863 3133876 ~ 3140489 (-)
AMCG00000888 LOC102209482 other upstream 899789 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 1840136 7629915 ~ 7645722 (-)
G127292 NA other upstream 3629217 9418996 ~ 9419325 (-)
G127443 NA other upstream 4484908 10274687 ~ 10278211 (-)
AMCG00000960 NA other upstream 4907077 10696856 ~ 10700364 (-)

Expression


Co-expression Network