AMCG00000861 (ralba,ralb,LOC107746258,LOC107597482)


Basic Information

Item Value
gene id AMCG00000861
gene name ralba,ralb,LOC107746258,LOC107597482
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5799381 ~ 5811882 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000861
ATGTGGTCCTGCACAGGATTGGAATCGAGGGTTAGGGTGTCCTCCCGGCGCTCGCTGCAGCTGTGTGTGGGGAGGCTGTGTCGGGACCAGGGGGACCGCTTCCCGTCGGGGGGAAAGGGCAGCCTCATTGCCATGATGTCTCCTCAAGACGGGGAGCAGCTTGACATCGTAAAGAGACCCAACCTGACCATCACAGCATCCCGTCACTACGAACCCACGAAGGCCGACAGCTACAGAAAGAAAGTGGTGCTAGACGGCGAAGAGGTGCAGATCGACATCCTGGACACGGCGGGACAGGAGGACTACGCTGCCATCCGAGACAACTACTTCCGCAGCGGAGAGGGCTTCCTTCTGGTCTTCTCCATCACGGAGCATGAGTCATTCACGGCCACCGCGGAGTTCAGGGAGCAGATCCTGCGGGTAAAAGCCGAGGAAGATAAGATCCCGTTGCTCGTGGTCGGGAACAAGTCGGATTTGGAAGACCGCAGGCAGGTGATGGTGGACGAGGCCCGAGGCAAGGCCGAGGAGTGGGGCGTGCAGTATGTGGAGACCTCTGCAAAGACCAGGGCCAACGTGGATAAGGTGTTTTTCGACCTTATGCGGGAAGTCCGAGCGAAAAAGAAGTctgaaaacaaggacaaaaatgGCAAGAACAGCAGGACTAAGCGAGGTTTCAGAGAGCGGTGCTGTTTGCTTTGA

Function

symbol description
ralba Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Ras protein signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in pancreatic adenocarcinoma. Orthologous to human RALB (RAS like proto-oncogene B).
ralb Enables GTPase activity; enzyme binding activity; and guanyl ribonucleotide binding activity. Involved in several processes, including cellular response to exogenous dsRNA; negative regulation of protein binding activity; and positive regulation of cellular metabolic process. Located in midbody and plasma membrane. Implicated in pancreatic adenocarcinoma.

NR:

description
PREDICTED: ras-related protein Ral-B

GO:

id name namespace
GO:0007265 Ras protein signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000861 True 699 mRNA 0.58 7 5799381 5811882

Neighbor

gene id symbol gene type direction distance location
AMCG00000860 inhbb,LOC106575190,LOC108411664,LOC106574263,LOC105019970,LOC108270543 coding downstream 9602 5782352 ~ 5789779 (-)
AMCG00000858 NA coding downstream 160140 5599949 ~ 5639241 (-)
AMCG00000853 LOC106586425,LOC108266238,LOC103360348,LOC102795313,LOC101468032 coding downstream 338577 5450060 ~ 5460804 (-)
AMCG00000851 tsn,LOC107555354,LOC107686515,LOC107555051,LOC107658218 coding downstream 353129 5440030 ~ 5446252 (-)
AMCG00000850 eaf2,LOC106586422 coding downstream 402995 5392602 ~ 5396386 (-)
AMCG00000864 NA coding upstream 10656 5822538 ~ 5856287 (-)
AMCG00000863 NA coding upstream 48963 5860845 ~ 5892754 (-)
AMCG00000865 NA coding upstream 110889 5922771 ~ 5923706 (-)
AMCG00000866 NA coding upstream 173222 5985104 ~ 6010417 (-)
AMCG00000875 LOC107725256,LOC103367750,LOC106582396,LOC107684456 coding upstream 315537 6127419 ~ 6142577 (-)
G126698 NA non-coding downstream 227248 5569944 ~ 5572133 (-)
G126665 NA non-coding downstream 335329 5462567 ~ 5464052 (-)
G126631 NA non-coding downstream 426922 5372249 ~ 5372459 (-)
G126563 NA non-coding downstream 680345 5116054 ~ 5119036 (-)
G126554 NA non-coding downstream 764684 5013868 ~ 5034697 (-)
G126767 NA non-coding upstream 131504 5943386 ~ 5949894 (-)
G126873 NA non-coding upstream 522831 6334713 ~ 6335866 (-)
G126887 NA non-coding upstream 569081 6380963 ~ 6381248 (-)
G126977 NA non-coding upstream 1308362 7120244 ~ 7125041 (-)
G127145 NA non-coding upstream 2826714 8638596 ~ 8639883 (-)
G126700 NA other downstream 226354 5572705 ~ 5573027 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 816730 4957138 ~ 4982651 (-)
G126427 NA other downstream 1162865 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 2142820 3553047 ~ 3656561 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 2658892 3133876 ~ 3140489 (-)
AMCG00000888 LOC102209482 other upstream 877686 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 1818033 7629915 ~ 7645722 (-)
G127292 NA other upstream 3607114 9418996 ~ 9419325 (-)
G127443 NA other upstream 4462805 10274687 ~ 10278211 (-)
AMCG00000960 NA other upstream 4884974 10696856 ~ 10700364 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038027 ralba coding NC_007120.7 CM002893.2 36896257 ~ 36924388 (-)