AMCG00000863


Basic Information

Item Value
gene id AMCG00000863
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5860845 ~ 5892754 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000863
TGTTTCTCTGCAGACCTTGTGTGGACAGTAATGACCGCACGCTTTCGAATTCCTGCTGGCAGAACCTACAATGTTCGAGCATCGGAGCTGGCACGAGACAGGCAGCACACACAGGTGGTCTGTAATGTACTTCTGCTGGATAACACTGTTCAGGCTTTCAAGGTTAACAAGCACGATCAAGGACAGATCCTGCTCGATGTAGTCTTCAAACATCTCGAGCTAACCGAGAGAGACTATTTTGGATTACAGCTGGCAGACGATTCTTCTGACAGTCCTAGGTGGCTGGATCCAAACAAACCATtgagaaagcaattaaaaaGGGGGTCTCCTCATAATTTGAACTTTAGAGTCAAATTTTTTGTAAGTGACCCAAATAAACTGCAGGAAGAGTACACAAGCTCAAGCAAGATATTCTCACTGGAAGCTGAACTGGGAGACTACAAGCATTCGGAGCATTTGCCAGGCTACCTCTCCGAGTACGGATTCATCCCCAACCCACCTCAAGACATCGAGAAAGAGATCGCTAAGCTGCACCAACAACACAAaGCATTGTCTCCCGCAGATGCAGAATTCAATTACCTTAATGCAGCACGTACTCTAGAACTGTACGGGGTCGAGTTGCACTATGCAAGGGATCAGAGCAACACAGAGATACTAATTGGGGTGATGTCAGGTGGGATCGTAATATACAAGAACAGGGTACGAATCAACTGCTTCCTATGgtTGAAGGTTGTAAAGATATCCTTCAAATGTAAGCAGTTTTTCATTCAACTCCGAAGAGAATTGCACGAATCTCGGGAAACGTTGATCGGGTTCAACATGGTGAACTACCGGGCCTGCAAGAACCTGTGGAAAGCATGTGTGGAGCACCACACGTTCTTCCGCTTGGACCGGCCTCTGCCTCCTCAGAAGAATTTTTTTGCACATTACTTCACATTGGGTTCAAAGTTTCGATACTGTGGGAGGACAGAAGTGCAGTCTGTGCAGTATGGCAAGGAAAAAGGAATCAAGGACAGAGTTTTTGCCAGATCTCCCAGCAAACCGTTGGTCCGGAAGCTGATGAGTGGGATGGATTGGGACACGGTGAGCAGGAACTCTCTGTCCGATGAGCGGCTGGAGACCCAGAGCCTGCCCACGCGCTCTCCCCCTGGCACCCCCAACCATAGGAACTCCATGTTTGCACAAGAAGGACCCCGCTTGCGACCGTCTTCCGTTGGACATTTGGTTGACCATGTGATCCACACATCACCAAGCCAAGTCTTTGCCAACCACAAATCCCCATCCTCCACACAGGCTAACAGCATCAGTTTGGACTCCTCCCCGTCTCAAGAGACAACCATAGATGGCCAGCCCCCAGCACTACCACCCAAGCAGTCCAGAAAGAACCTCTTCAACCAGATCAATCAGTCCCACTCCCAGCAGGAACTGGATAACcatattaatgaaatgtatgatGTTCCCGTTGCATCAGAGAAATCAATGCTAAACGGAGTCGTTCCGCACGACAATCTCGTCCTGATCCGAATGAGACCAGATGAACACGGCCGATTTGGCTTTAATGTGAAGgGCGGCTCTGACCAGAAAATGCCTGTGATTGTGTCTCGGGTGGCTCCTGGAACATCGGCGGACCTGTGTGTCCCTCGTCTAAATGAAGGTGATCAGGTTGTACTGATCAATGGCAGGGATATATCGGAGCACACCCACGACCAGGTTGTCATGTTCATCAAAGCGAGCTGCGAGAGCCATTCGGGGGAACTTATCCTATTGGTCCGGCCCAATGCGATCTATGACGTCATAGAAGAGAAGATGGAGAACGAGCCAGATTTCCAGTATATCCCGGAGAAATCCCCCCTGGATCCCACACACCTGGATAACGATGCGTGGCGAGAGTCGATACTGCAGCTCAGGGAAGGGCTGAGCAACTACACCGTCTTGGCTCAGTTTGACctACTTTACCGGAAAAAGCCTGGAATGACAATGTCTTGTGCCAAATTACCTCAGAACATTTCCAAAAACCGATACAGAGACATCTCACCTTATGATGCAACACGGGTTATTCTGAAAGGTGTGGATGACTATATCAATGCAAATTATATCAATATGGAAATCCCTTCTTCCAGCATCATTAACCGATACATTGCCTGCCAGGGTCCCCTGCCCAACACATGTCTAGATTTCTGGCAGATGACTTGGGAACAGTGCTCCTCCATGGTCGTGATGCTCACCACTCAAGTGGAGCGAGGCAGAGTGAAGTGTCATCAGTACTGGCCCAATCCATGTGGAAGTGCTTCTTACGGCAATTTCCAGATCATCTGCCTGTCTGAAGAAGGGAATTCCGCATTCCTGGTTAGAGAGATGACTCTCACAAACCTGGAGAGCAACGAAAGTCGTCCGCTGACTCAGATCCAGTACCTGGCCTGGCCCGACCACGGAGTTCCTGATGACTCGACAGATTTCCTGGACTTTGTAAGCCTGGTGCGCAGCAAGCGAGCCGGGAAGAACGAGCCTGTGATCGTGCACTGCAGCGCCGGGATTGGCCGGACTGGGGTTCTCATCACAATGGAAACAGCGATGTGTTTGATCGAGTGCAATCAGCCCGTCTACCCGTTAGACATCGTACGAACAATGAGAGATCAAAGGGCTATGATGATTCAAACCTCTagCCAGTACAAGTTTGTGTGTGAAGCTATCTTAAAGGTGTATGAAGAAGGACTGCTTAAACCTTTAAAGTCAACACTGTACCAGTAACCCCAAGAGGAGACGACTTCCTGTTCAAGGCAACGCTTTCACTTCTCCGCCGGGGAAAAGCTCGTTAACGGTGCGCAGGACGGGCTTTCACTCGACGTTGCCTAATGATATCAACGGAAAATCACGTCTGAATTGGACACGTGGGAGCTGGAACTTTTTGAGAAAACAGAGCACTGTTGCACTTTATgttggacaaaaaaaaaagtatattagataattaatgcatttcattaaaaaatttaaaattattgtgCTTCTTTCTAAAACGATAGGTACTTAGGGACAGTGAGTGTTCAGGGTAAATAAAAGATGGAGTTTTGCTGTAGTGCCATAAAAACCGGAGGGTAGACCttcaaaataagcattttaCTTATGATATGGAGTTGCCCATTCTAAAAgggtaaaaacagaaaaaaaaaaaaaagctatgcCTGAAATTGATATAAAACGTTGAAACTATTCATTTTCCATCATAATCCGTGACTaacaataattttttttttttttaatatatatttattatgttttagtttgtgttAACccagtttacaaaatatattcgCTCTGTTTGGAATTTGTTTGACTGGTCCACTAACCTAGCGGTCTGAAAACGTTCGGTGGTCTTGTTTAATAAGATCCAGTAAATTGTTTTCTACAGCGAAGCGGCGTTGATGTTCGATgacatttttgcttttcagtGAAAAACAATTTCACACTTTGTCAGGATGCGGAGGTACGACATGCTGGTAATGAGAGCACTTTTGTTGCATGTGGTAATGCCACTATTGCGATTGTCAGTTTGTACTAGGATTATTAATTAGCAGCTGCTGGAAAAGTTTGTACTTGTAATAGGTCATATTCCAGCCTAAATATGTCTGTGATTGATCACTGCTCTCATTGGCAAGGGCAGCGTTGTCATATGCTGTACCCACAATCCCTCATGCATCCGAATCtgaatatttacacacacacacacacacacacacgtgcagtTTAGGCAAGAGACACTGTTACTGAAACCCGACTAAACCCTTTAcgatttgtttttggtttggttgcTTCTGAGTTGTTTGTTGAATGTAAAGACCCTGAAAtgacaattaaatgaaaacctttttttttttttccatactgGTGTGGTGTTTTATATGCACAATTTTGTTCAAGGCTTTAGTTGGGTTTCAAACAGATTTCTGAGCATCTTATGGTACTTTTGACTTCATCCAGGTTTCTTATAATGATACTGCAAACTTAAGCAatgctaaaaaagaaaaatcatgtttttactCTTAGAAAATAACTGTGCATTGATTTTCCAATAGATTTTTAAGTAaggttttttgtatttttttgatCAAAGTCTAGTTATTTATTACATAACCTGTAAAGTCAAATAGGCTCCGTAGGTGGTGCTATAGTGCATATAATACACATGATGGCACCTTGTGCAGTCTACGATGTGTATTACATTATGCTTTAACGTTAAAGTATGTTAGAAATCTCAAATCTTTCTCCCTAGCATATttgtcttaataaataaattgtactaTATTACTGCCTTCAACACAAAGCAGCATCTTTTGTCAGTATGTTTATACAATTACGTGCTGACGTGATTGTCCTACATTTCACCCAGTCCTTTGTCATGGTGTCCCGCCCTGAAACCTCTAATCATTAGAGAACATTTATTACCTGTTTCCATATGAAGGAATATGGAAATTCGGAAAGCCGCAAGTGTGTCAATTCAGtcgattttgtgtttgtgtgttctgcAATgtcaaaaattgtatttgtttttatgacttCCCTGCGTTTAGACGCAAGGTGTAGTAGAATTGGCTGCGAGGATGTGAAATGTGAAGCCATCTCTGCTGTGCATCGTACACAGATACCATTATATGGATTAAATCTGGCTTTGTCTGCaaacagaaaagcagtttttagtttgctatgcAGTTAAAGCGGTTCATTATATCCTGTTGGCGAGAGAATTGCTGTTCGCCCGTTTAGTCTCTGGGCCGAACAGAACCACACGCTGCCACGGCTTAATGTTCAGAGGCTTCAAGGTGTcttttaagttaattttaagaaaaacaggtAATCAGTACATTTCAACTTTTCTTAACCCAGTTTATTGAATTCTATTCAGATATCgggcagtttattttaaaacaaaattaaaggaCTTGGTTCAGGACAAATCGATCTCAAACTTTGAATGTTCAATAACAACCTGTGTATGAATGACCATGTGTTGTGATGGCATAAGCTATAGATTTGGTATGCTGTGGAAAATGGGGGCGGTGGGGCGGGGGGACTGGGGTATTTTTGTAAACGAAAACCTCATGTTTAATGGGAATGGACAGCACTTTTCAGCAGACATTACTGCTACTCAGtagtgcaaaaacaaaagtgtcaaGGAGGAAAGTGTATGGACAGTgccacattttcatttttggtgTACAATAGCTAGacagtgtaaatacagagcTGTACATTTAagatctttaaaatgaaaaggaaaattgcataagagtgaaaatatttttatagAAGAGATTCTGGAAATTATACAAACGTTTTccactaaaaaataaattgaaaaaaaatatcgTACAGCATTTCGCAACATGCTGACTTAAAGTGCTATCCATTAATCCAGATCTTCGTACAGATATGGGACTGAAAAGAACGAACCACgtttaatgaaatgcatgtcACTGAAAACTGGATtataagaaaaccaaaaaagtaataaatttCACATCTGATTTTGTCAAAGCCAGCAATCATTTTGTGAtagtctttgttttaattacattatattacaagTGAAATTTGTAGGCACGCCATGATTAAATAGAAACctg

Function

GO: NA

KEGG:

id description
K18037 PTPN4, MEG; tyrosine-protein phosphatase non-receptor type 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000863 True 5618 mRNA 0.42 25 5860845 5892754

Neighbor

gene id symbol gene type direction distance location
AMCG00000864 NA coding downstream 4558 5822538 ~ 5856287 (-)
AMCG00000861 ralba,ralb,LOC107746258,LOC107597482 coding downstream 48963 5799381 ~ 5811882 (-)
AMCG00000860 inhbb,LOC106575190,LOC108411664,LOC106574263,LOC105019970,LOC108270543 coding downstream 71066 5782352 ~ 5789779 (-)
AMCG00000858 NA coding downstream 221604 5599949 ~ 5639241 (-)
AMCG00000853 LOC106586425,LOC108266238,LOC103360348,LOC102795313,LOC101468032 coding downstream 400041 5450060 ~ 5460804 (-)
AMCG00000865 NA coding upstream 30017 5922771 ~ 5923706 (-)
AMCG00000866 NA coding upstream 92350 5985104 ~ 6010417 (-)
AMCG00000875 LOC107725256,LOC103367750,LOC106582396,LOC107684456 coding upstream 234665 6127419 ~ 6142577 (-)
AMCG00000874 NA coding upstream 305837 6198591 ~ 6211393 (-)
AMCG00000873 LOC107710929 coding upstream 361146 6253900 ~ 6289579 (-)
G126698 NA non-coding downstream 288712 5569944 ~ 5572133 (-)
G126665 NA non-coding downstream 396793 5462567 ~ 5464052 (-)
G126631 NA non-coding downstream 488386 5372249 ~ 5372459 (-)
G126563 NA non-coding downstream 741809 5116054 ~ 5119036 (-)
G126554 NA non-coding downstream 826148 5013868 ~ 5034697 (-)
G126767 NA non-coding upstream 50632 5943386 ~ 5949894 (-)
G126873 NA non-coding upstream 441959 6334713 ~ 6335866 (-)
G126887 NA non-coding upstream 488209 6380963 ~ 6381248 (-)
G126977 NA non-coding upstream 1227490 7120244 ~ 7125041 (-)
G127145 NA non-coding upstream 2745842 8638596 ~ 8639883 (-)
G126700 NA other downstream 287818 5572705 ~ 5573027 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 878194 4957138 ~ 4982651 (-)
G126427 NA other downstream 1224329 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 2204284 3553047 ~ 3656561 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 2720356 3133876 ~ 3140489 (-)
AMCG00000888 LOC102209482 other upstream 796814 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 1737161 7629915 ~ 7645722 (-)
G127292 NA other upstream 3526242 9418996 ~ 9419325 (-)
G127443 NA other upstream 4381933 10274687 ~ 10278211 (-)
AMCG00000960 NA other upstream 4804102 10696856 ~ 10700364 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location