AMCG00000864


Basic Information

Item Value
gene id AMCG00000864
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5822538 ~ 5856287 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000864
CTTTCATCTTCTGGGCCGCCGTGGCTGGACGCGGGTTTGACAATGGGGGCCAAGTTTGGTGTAACTCTGTTGTAAATGTTGCAAAGACGCGGCCTGGTCTCCGTACCTGGACTGCCGGGGGGCTCTGCGGTTTCCCTGCGGCTCTGAACGCCTCTCTGTGTCGGGACGCGGCGACTGGATACTTTGTGTCCGTCAGCCCTGTGTGGCTGGAGCAACAAGTCGAGGAAGGTGAGACGGTGTGAACTCTCAAAATGTTGAGTTTCCTGCGGCGGACGCTGGGGAGGCGGTCCATGCGCAAACATGCAGAGAAGGAGCGTCTGCGGGAAGCCCAGAGAGCCAGCACTCACATCCCCGCTGCGGGGGACGCCCATTCCATCATCACCTGCCGGGTGTCTCTGCTGGACGGCACCGATGTCAGCGTGGACCTCCCGaAAAAAGCAAAGGGCGAGGAGCTGTTTGATCAGATCATGTACTACTTGGATTTGGTCGAGAAGGATTACTTTGGTCTGCGCTTTATGGATTCAGCACAAGTACCGCACTGGCTGGACAACACCAAGAGCATCAAGAAGCAAGTTAAAATTGGCCCACCATACTGCCTCCACCTGAGGGTGAAGTTTTACTCTTCAGAGCCCAACAACCTTCATGAGGAACTGACCAGATACTTGTTTGTGTTGCAGCTAAAGCAGGACATCCTTAGTGGAAAGTTGGAGTGCCCCTTTGACACAGCGGTGCAGTTGGCAGGGTTTGCCTTGCAGGCCGAGCTGGGAGACTGCGACCCCGCCGAGCACTCCCTCGACCTGGTGTCCGAGTTCCGGTTCATCCCAGAGCAGTCTGAAGACACGGAACTGGCCATCTACGAGAAATGGAAGGAGTGCAGaggcCAGATGCCTTCTCAGGCGGAGATAAACTACCTTAACAAGGCCAAATGGCTGGAGATGTATGGTGTAGACATGCATATGGTAAAGGCCAGGGATGGGAATGAGTACAGCCTGGGACTGACCCCCACTGGAGTGCTGGTGTTTGAGGGAGAGACTAAGATTGGTCTTTTCTTCTGGCCTAAGATAACCAGACTGGACTTTAAGAAGAGCAAATTGACTCTTGTGGTTGTGGAGGATGACGAACAGGTAATGCAGGAAGCAGAAGAGGGCAAAGAGCAGGAGCACACGTTCGTGTTCCGCATGGACCACCCCAAGGCCTGCAAGCACCTGTGGAAGTGTGCGGTGGAGCACCACGCGTTCTTCCGCCTGCGAGGGCCAGTGCAGAAGGGCTCGGCGCGATCCAGCTTCATCCGCATGGGCTCCCGCTTCCGATACAGTGGTAAAACAGAATACCAAACCACGAAAGCCAACAAAGCCCGGCGGTCGGCTTCGTTTGAGAGAAGACCCAGCCGCAGGTACTCCAGGAGGACCATGCAGCTGAGAGCGGCCGCCCAGAAGAACCACGAGTCAAATGCACAGAATAATGGTGTTAATCAGAACAATGATGTAAAgGCCCGCACCCCCCGGTCCACCCTGCCCCTTGCCGCCGCCGTGCCCACCTCCCCCGTGCCTCTGGAAATCGAAGCCCTCCCCAGGAGTCCGAGGGCTGGCCCATCGGACAAGAAGAGCCTACCTCTCATTGCCGATTTACTAGACAGCAAGGACCTGCTAGAAACTTGCATTGATGAGGTCATCGGGGTGCCCGTTACAATCCCAGGCATGCCTGAAGACGTGGGCCCCAGCacagcggcggcggcggcgtcCCCTGGAGTCAGTGAAACTGTGGAGGAGAGGGTCTCTTTGTGTGAAGCAGCTGCCAGGCTGAAGCTGTTGGAGATCGAGAGTACGGCGTTGTCAGCTTCTGCCAGGTCCAATATCAATGTGAATATGAACAATCAGGAGGATGTGGTGAAGCTGACGGAGAAGTGTCTGAACGGCGTGACCAGCAGCCCGGTCCTCCCTCGCCCGGCCCGGCCCCCAGAGGACCTCAAGAGCAACATCCTCAAAGCCCAGGTCGAGGCGGCCCTGAAGGTAACAAGAGAAGACCTTCCAATGACGGGAGACAAAAACTGCAACCTTCAGGAAGCGGCTGTCAGGAATAAGGGGAAGTGTGCACGTGCTGGCAGCACCTCCTCCCTGCCCGTGTGTGGCCGGGCCGAGCGCCAGGACTCGAGGGACCCCAGGCTGCCCCTGCTGCCCTGTACCAGGTCCAGTGATGAAGTAAACACTGTTGCAATGCCTGTGACTGAAGACCGTTCCTCTTCCTTAACCTCAATGCTGTCTGCTGAGCCTGTCAGTGAGACCATGACCTTAAAGAGTAAAGCTGAAGAACTGGACGCCCTGATTTCGTCTCTCTCGGACAATCTGATCGACTTCACAGATGCCACACCGTTGTGTGGTGTGTTTACGAACGGCCTTCCTGACGGCGACGCCAGCTCCTCCACGAAAACCACACCGCTGAATAATTCTGAGAGCACCCCCACAGCCCCGCAGCCGCCACTCGCTCAAATTCCTACTGTGATCGCTACCAGCACTGTGACCGATCCCGCCAAGGAGGAGGCGGTGAAGTCCAAGCGCCTGCTGACCACTGAGCTCTGAGGTGGGAACTCGTTCTGTCTGTCTGGAGTGAATCACTGTGACTGGGCCGCCTCCGAGCTCAGTCACGAGAAACTGGATTTCTCCACCTGTAATAATTCCAATAGGGTGGggggtttgtgtgtggggggggggaatgggTTGTTAACCATACGGTATTATTGAACAGGATATTGTTCGTACACATTCCAATAAGCTGCTTTTAGATTCGATTTTAAGTGGTATTTTTAAGGGAACAAAAGGTTTTAGTCTCAGACATGCATAGCTGGTCAGCATCCGAGAATGAGAGAATTGTCCATGTTCAGCAGGGAGACGTCGCCACTTTATACATTCCCGATCTCTGCAGCCAGTCTCCCTGCAGATAAATCTTGATTGATCTTGGCTGGGCCCAGCTAGACTGTGCTCTGTGGCCTTTCCTCTTATGGACTAAGTGGGGAACCGGTTCAACCCCAGCTGGAGGTCCTTCCTCCCCTGTCCGACATTGAGGAATGGCCGAAGAATACCATTTTACCTTGAAAAGTCccagatgtttgttttagaatttcattttattcttggatttgtttttaaataccttaacattaaatgtttcttaCCAATGCCTACAATTTTACTTGGAAATATTGAAcaagctattttattttatttttctcaactGTCCACActttcatttgtaaactgtTAAGTAGGACCCCAGACTAGCATTATCATTTCATAAGCATGACTTAGATTCTTCAGAGAACCAACAAACGAGACGATGCTGACAAATGCTAAACGGTAGTGCTACGATGAGccattaaaaagtaaacattaggtctacactatttattttgttatataataaACACTAGTTATTCGCcttatttagtgttttgtatatCTGAAGTTTGTCTAGATGTTGCACTGTTAGTTACCAATACTTTTCATGTAGCACCTATATGATTTTGAAAGCACTGGATAtgattttaatcacatttgtcctcactgtatttgtgtgtgtgtgtacagaaatatacagatgtttgtCTTGTGTAAACTGGTACCCCAGTTTGATAGAATACCTATATATTTCTGGAACCATATGAAGTCTCATGACAAGCTTAAAGATTGTATGGATATTAATGGAAACACTGGATTGTGGACCATACTGAAATGAGCTCTGTGGGAAGTTGGGTGACTGCCGTGGCGATGGCAGGGTTGTGATAACCCGACTGTCGATGAATGTCCTGTACTGGCATTGCGAGACGATGTCttcaataacaaaatgtggaccTAGTGTGACTGGTTACCATTAGGATTGAGTTTTCACGACCGCAGCCATGGAACTGTGAAAACCTGAACTCATCGTGTGGATGGGAATCCCAAAGCCAAGAGTGTTGCAGTGACAGTTTGTCATATGGGCTGAAGTTTGGCCTGTTGCTGTTCTTCCTTTTATACCTTGTTGGTTCACTGGCAACATCTGACCTTTCTTGTGCAATTCTGCCGCATTCACCACCATTTAGTTTCCACACTCCACTTTACAGCATGAAGTATTGCTTTGGCCAGCACTACCCCCCTGTAAAAGTCCTGAACCTTCTCCCTACATCATCCCTGGCTTGTTAACTGTCGTAGGCCACAATGATGTCGATTTATCATCCGACTCAAAAAGCCCTTTGAATCCAGTCTGAGTAGCTCTCTCCGGGCGGTCTTCAGCTCTTGTGCATTTCTAAAAAGTAGTCGCTAGCTAACAGGATGacctaaataaaaatgaatcgtGTTGCCAGACAagaacattttctctctccctcgtACATTAAAAGGATGGGTGAAACTGTATATGTAGGGGTAGTTTTTGGCCCTGACAtgaatgataaatataatcagaGGTGTACTTTTTTCTTTAGGTAGACGTCAGTGAACATTAGCAATACTCTGGATTTAGATCTTTACTTTGTCATGTAAGTGCAGTTTTCCTGTAGCTTTCTgactaatgtattttttataaagtgCACCCTGTTTCACTCTGTATATTTCAATGTAACGTAGGTGTAAAAACTGGATAAGAAGGCACTgcactgatttgtattttgtatgtacaTTGGTAAGAGTGGGGGAATTGTAGGCCTGCAGCAGTTTTATATGATGTAGGATTTCAAGTAAAATGTTTGTTAGAATCCTGTGGTTTGtggtgtctttttgtttgtgcaCATGATCCTCTGATTACTTAATAGCATTAGTCCTGACTTTTATAATCGTCAGGTCAtgttaaaatgttcaatataCTATAGTTAATGGGGTAACACAACTGAAAACTACTAATTTTAACCAAACTGTCAATTGTGTGTCCAGAATTCAGATTAAACACTGTGCCACCTAGAGATATTAAACTTGACACTGCTCTTTATCTCTCTGCTCCTGTCaactgcacatttattttcttgcactaTACTGACCTCTTGTGGTGTTTGTTCTTAAGAGCCAGTCTCTCCAGGTATCACAGTACATGAGTACAACTTGCATCAGTGTTTGGTGGCATATTTATAGATTTCTGAT

Function

GO:

id name namespace
GO:0045747 positive regulation of Notch signaling pathway biological_process
GO:0001822 kidney development biological_process
GO:0045199 maintenance of epithelial cell apical/basal polarity biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0034629 cellular protein-containing complex localization biological_process
GO:0021744 dorsal motor nucleus of vagus nerve development biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
K23963 EPB41L5; band 4.1-like protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000864 True 5105 mRNA 0.49 25 5822538 5856287

Neighbor

gene id symbol gene type direction distance location
AMCG00000861 ralba,ralb,LOC107746258,LOC107597482 coding downstream 10656 5799381 ~ 5811882 (-)
AMCG00000860 inhbb,LOC106575190,LOC108411664,LOC106574263,LOC105019970,LOC108270543 coding downstream 32759 5782352 ~ 5789779 (-)
AMCG00000858 NA coding downstream 183297 5599949 ~ 5639241 (-)
AMCG00000853 LOC106586425,LOC108266238,LOC103360348,LOC102795313,LOC101468032 coding downstream 361734 5450060 ~ 5460804 (-)
AMCG00000851 tsn,LOC107555354,LOC107686515,LOC107555051,LOC107658218 coding downstream 376286 5440030 ~ 5446252 (-)
AMCG00000863 NA coding upstream 4558 5860845 ~ 5892754 (-)
AMCG00000865 NA coding upstream 66484 5922771 ~ 5923706 (-)
AMCG00000866 NA coding upstream 128817 5985104 ~ 6010417 (-)
AMCG00000875 LOC107725256,LOC103367750,LOC106582396,LOC107684456 coding upstream 271132 6127419 ~ 6142577 (-)
AMCG00000874 NA coding upstream 342304 6198591 ~ 6211393 (-)
G126698 NA non-coding downstream 250405 5569944 ~ 5572133 (-)
G126665 NA non-coding downstream 358486 5462567 ~ 5464052 (-)
G126631 NA non-coding downstream 450079 5372249 ~ 5372459 (-)
G126563 NA non-coding downstream 703502 5116054 ~ 5119036 (-)
G126554 NA non-coding downstream 787841 5013868 ~ 5034697 (-)
G126767 NA non-coding upstream 87099 5943386 ~ 5949894 (-)
G126873 NA non-coding upstream 478426 6334713 ~ 6335866 (-)
G126887 NA non-coding upstream 524676 6380963 ~ 6381248 (-)
G126977 NA non-coding upstream 1263957 7120244 ~ 7125041 (-)
G127145 NA non-coding upstream 2782309 8638596 ~ 8639883 (-)
G126700 NA other downstream 249511 5572705 ~ 5573027 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 839887 4957138 ~ 4982651 (-)
G126427 NA other downstream 1186022 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 2165977 3553047 ~ 3656561 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 2682049 3133876 ~ 3140489 (-)
AMCG00000888 LOC102209482 other upstream 833281 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 1773628 7629915 ~ 7645722 (-)
G127292 NA other upstream 3562709 9418996 ~ 9419325 (-)
G127443 NA other upstream 4418400 10274687 ~ 10278211 (-)
AMCG00000960 NA other upstream 4840569 10696856 ~ 10700364 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G83829 NA unknown NC_048565.1 CM023219.2 75112660 ~ 75114190 (+)