Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00000867 |
| gene name | acmsd,LOC107555338,LOC107723660 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030137.1 |
| NCBI id | CM030137.1 |
| chromosome length | 27060302 |
| location | 6181905 ~ 6189062 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| acmsd | Predicted to enable carboxy-lyase activity. Predicted to be involved in secondary metabolic process. Predicted to be active in cytosol. Orthologous to human ACMSD (aminocarboxymuconate semialdehyde decarboxylase). |
| description |
|---|
| 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0001760 | aminocarboxymuconate-semialdehyde decarboxylase activity | molecular_function |
| id | description |
|---|---|
| K03392 | ACMSD; aminocarboxymuconate-semialdehyde decarboxylase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00000867 | True | 1330 | mRNA | 0.43 | 9 | 6181905 | 6189062 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00000868 | mgat5,LOC103369129,LOC106575089 | coding | upstream | 61624 | 6083991 ~ 6120281 (+) |
| AMCG00000862 | LOC107551943,LOC108430494,LOC107663912,LOC107733654 | coding | upstream | 232601 | 5939611 ~ 5949304 (+) |
| AMCG00000859 | NA | coding | upstream | 357262 | 5817121 ~ 5824643 (+) |
| AMCG00000856 | NA | coding | upstream | 613524 | 5557451 ~ 5568381 (+) |
| AMCG00000855 | clasp1 | coding | upstream | 625236 | 5497622 ~ 5556669 (+) |
| AMCG00000872 | NA | coding | downstream | 908 | 6189970 ~ 6193791 (+) |
| AMCG00000869 | NA | coding | downstream | 4996 | 6194058 ~ 6198523 (+) |
| AMCG00000871 | NA | coding | downstream | 29318 | 6218380 ~ 6221405 (+) |
| AMCG00000870 | rab3gap1,LOC106586310 | coding | downstream | 43467 | 6232529 ~ 6252770 (+) |
| AMCG00000878 | NA | coding | downstream | 115955 | 6305017 ~ 6332100 (+) |
| G126714 | NA | non-coding | upstream | 382270 | 5719268 ~ 5799635 (+) |
| G126697 | NA | non-coding | upstream | 609973 | 5569970 ~ 5571932 (+) |
| G126667 | NA | non-coding | upstream | 714377 | 5466982 ~ 5467528 (+) |
| G126621 | NA | non-coding | upstream | 831663 | 5349982 ~ 5350242 (+) |
| G126574 | NA | non-coding | upstream | 1048949 | 5132374 ~ 5132956 (+) |
| G126781 | map3k19,LOC106586307 | non-coding | downstream | 11847 | 6200909 ~ 6201605 (+) |
| G126782 | NA | non-coding | downstream | 14636 | 6203698 ~ 6206033 (+) |
| G126805 | NA | non-coding | downstream | 24120 | 6213182 ~ 6213407 (+) |
| G126886 | NA | non-coding | downstream | 191912 | 6380974 ~ 6381195 (+) |
| G126919 | epc2,LOC106586324 | non-coding | downstream | 484550 | 6673612 ~ 6674227 (+) |
| AMCG00000848 | NA | other | upstream | 715924 | 5461301 ~ 5465981 (+) |
| AMCG00000734 | NA | other | upstream | 4367748 | 1805407 ~ 1814157 (+) |
| AMCG00000729 | satb2,LOC107690605,LOC107569722 | other | upstream | 4483332 | 1668845 ~ 1698573 (+) |
| AMCG00000723 | crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 | other | upstream | 4575874 | 1599696 ~ 1606031 (+) |
| G125561 | NA | other | upstream | 5778314 | 339640 ~ 403591 (+) |
| G127134 | NA | other | downstream | 2428137 | 8617199 ~ 8620195 (+) |
| AMCG00000949 | NA | other | downstream | 3911221 | 10100283 ~ 10154187 (+) |
| AMCG00001002 | myo3b | other | downstream | 5810602 | 11999664 ~ 12011425 (+) |
| AMCG00001022 | NA | other | downstream | 6099888 | 12288950 ~ 12385042 (+) |
| AMCG00001098 | NA | other | downstream | 8961213 | 15150275 ~ 15184392 (+) |
