AMCG00000873 (LOC107710929)


Basic Information

Item Value
gene id AMCG00000873
gene name LOC107710929
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6253900 ~ 6289579 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000873
GCTGATCTGAGGCAAGATGCAATGTGCTTCTGCAGAACATGTAACTAAAcgtaaatgcaaaatgcaataaGTTATACAGTGAAATCAGTTTAATCAACTTCAACAAATAGTATTgcagtaatataattgtatatagtaATAAGCTATACAACTGATTTAATTGAAGTAGTTTAACCAAATAGGTATGGGGTCTGATCTGCCAAAGTGATTAAGCAGAGAGGGGTTGCTGATAGATGTGCAGTCTGAGAAGtttggaggaggagagtCGTTCCACAAGTCGCGTCTCAGAACGCCTGACGTAACAGCGTCTGACGTCAGACGCAAAGCGTGGGAAATGTCAAAATAAGTTCGGCGGCAGCAACAGAAGAGAGATCATTGGACCTGCTGGTGCTGCAAGATAGTGGACTACTGATGAACAGAGCAGCATGACTGAAGTCCGGCCGATGAACCCGAGCCCTCTCGCGGGCAGCAGCGGTGCCGGGTGTGAAAGTGGGCAGGATCGCCAGCTGCTGTTCCTTCCTCCAAAGCTGTATCACAGACTGATGCCTTTTCAGAGGGAAGGTGTCAAATTCGCCCTTTCCAGGCATGGCAGGTGTATGATTGCTGATGAGATGGGTCTAGGCAAAACCATCCAGGCCATCTCTGTAGCTTGTTTCTACAAAGATGAGTGGCCTCTTCTCATTGTCGTTCCCTCGTCGCTGAAGTACCCCTGGATTGAGGAGATGGAGAAATGGATCCCGGAGTTAAACCCTAATGACATCAGTCTCGTGGAGAACAAAACCGACATCGGGAGGATATCCACCAGCAAAGTTACTGTTTTGGGATATGGGCTTCTGACCAATGATGCAAAGATACTGGTTGATGCCCTTTACAAACAGAACTTCAAGGTCGTGATAGTGGATGAGTCCCACTACCTGAAATCAAGGAACGCAGCCCGAAGTAAGATCCTGGTGCCCATCATACAGAAGGCCAAGAGAGCCCTTCTTCTGACGGGGACTCCGGCACTGGGACGGCCGGAGGAGCTTTTTATGCAGATTGACGCTCTGTATCCTAGGAGATTTGGAACCTGGTCTGATTATGCTGCAAAATATTGCAATGCTCATTTCAGGGGGGCTTCTAACCTGGACGAACTGCACCAGCGTTTAAATGAAATCATGATCCGGCGAATGAAGGATCAAGTACTCACTCAACTTCCTCCTAAAATCCGTCAACGCATTCCTTTTGACCTTCCAAAAGAAGCCGCTAAGGAAGCATGTGCCAGCTTCGAGGAATGGGATAAATTAATGAGAACGCTGGGTACAGGGACTGCAGGGACCGATAACCCCTTTGTTGAAGTCATGGGGCTCATTACGCGCATGTACAAACAGACTGCAATCGCCAAGgcAGGAGCCGTAAAAGACTACATCAAAATGAtgctggaaaatgaaaaactgaagttCCTAGTTTTTGCTCATCATCTGACAATGATTCAGGCTTGTACAGAGGCTGTCATAGAAGCCAAGACCCGGTACATCCGTATAGACGGCAGTGTGCCATCGTCTGAGAGGGTCCACCTCGTTCACCAGTTTCAGAATGACCCCGATACCAGGGTTGCGGTCTTGAGTATACAAGCTGCTGGTCAGGGCCTGACATTTACTGCTGCCACCCATGTTGTGTTCGCTGAGCTGTACTGGAACCCGGGCCACGTGAAGCAGGCGGAGGACCGAGCGCATCGGATCGGGCAGAGCAGCTCGGTGCACGTCCACTACCTCATCGCCAAGGGCACGTTCGATACGCACATGTGGGGGATGCTGAATCGCAAGGAGACAGTGACAGGCAGCACCTTAAATGGGAAAAAAGAATACTTGAAAGCAGAAATTGGAGACAAGGAGAAGTGGGATTTCCTGAATTTCTCCAGTGCGTGGACACCAAGCGAGACTCTTCCACAGGAAGACAGCAAAGATGAAGTGTTCTTCTCCCATtttgagaaagagaaacagcaCGACATCCGCACCTATTTCTCCCCGGGCTCAGGcaaggagaagaaaaggaaaaggaccACAAAGGAGGACTCTGCGGTCCCTGTCATGGGGCAGAGCCCGCCAGAGGCCTCCACAGCGGGCGGGCCGACTGAGCAGGACAGCAGCGATGCCCTTTGTGGGGGAGAGACGGCGTCCCCGATAGTGCTGGGGGATGATCCGCCGGAGCTCGACTCTGAACCTCACAAGAAAAGGCTGAGACAGGCCAGCCAGCCTGTGGGCAAGAGGACGGCGGGAGAGAATAGGAAGTCTTGGGCGGGTGAAGCGAGCTCCCCGTTTTCATCCCGAGGAGCCCACAGAGTTTCCGAAGGGGCTCCTCTGGCACCCAGGAGGCTGCTGTCAGACGTGAAGAGGTGGGATTGTAGCACCTGCACGTTCACCAACAGCTCCCTCCTGCCGTACTGCGAGATGTGCGATACCCAGCGCGCCAGCTGCGGCGACTCCAGTGTGGGTCTCGGTATTCAGAGCGACGGGCCTGTATCCGAGCAGCCGGCGCAGGAGAGCCGGCCCCAGAGGCGCGAGCCGAGCCCCAGCGCTGCCGGAGACTCTGACAACGAGGATAATGAGAGCCCGCGTCCCCGTCCCGCAGTCCCTAATGAGGGGGAGAGACAGGAGGCTGAAGATTCAACCCAGAGAAATTCATTATcccaaaacaatgaaaatgCAGCAGAGTGCGATTCTGCCGATGCCACTGCTTATGAAGATCTGAGATTCTGTGCCAGCAGGAACACGGACAGGATTTTTCTCTACACCAAGGATGGAGATCCAATGAACTGCAATTTCATCCCACTGGACATAAAACTAGATATATGGGAGGATTTACCAGAGAAGTTCAAACACATGGCGTACCATCGTGCGCTTCGTGCGGGCGTGGAGCTCCCTGACAGCCATGAAGCAGAGAGCGATCCGGAAAAGCGGTCACCTGTTCCAGAACCCCGTGCTGGCGCTGGAGGACATCGCCAGCAGCCAGCATACCTCACCAAGGAGGATGTCGCACAGGCCTCTCTAACGAAAGCCCAGCGGGATGGAGGCACCGTCCGAGTTCTCGCCAGAGAGAACGCCTTTTTCTCCAAAAGAAGAGGCGCTCAGCAAGCGAACGGGATCGCTAAGGAggaggagggggggatcTCGGCGGAGGACCCCAGAGAGGACAGTGGCTCCACTGCCGCTCCCCTGCCGCCTCGAGGGGAGAGCGCTCGGGAGGGAAGCTACCTGCAGGTGGTGGACGCGGAGGGCACCCCACTGTGCCTGTCCTGCCAGCAGCCCTGCCTCCAGCCCGGGGCGCCCGGGGAGAACAGCGCCTGGGACACGCGCTTCTGCTCCCACCGGTGCCAGGAGGAGTTCCTGGTGCGCTCCAGCCAGTCCTACCTGAGAGCCAAGGTCCTGGAGACGGAGCACGGCGTCTGCCAGCAGTGCGGCCTGGACGCCCAGGGGCTGTACCAGCGGGTCCGGGACGCCCCCACGACGCACCGGAAGGAGATGCTGGAGAACACCTGGCTCTCACAGCTGTCGCTCAGCCAGTTGAATGAGATGATCAGGAGCCCAGCGGAGGGCCAGTTCTGGCAGGCGGACCACATCCGGCCAGTGTTCATGGGTGGAGGACAGTGTTCGTTGGACAACTTACAAACTCTGTGCACAGTCTGTCACAGGAAGAGGACCGCAATGCAGGCAAAACAAAGGAGCCAGATGAAGAAAAACACCGCCGCTTCGAAACTCGCTTCCGATATCGCGCGCTTTTTTGTTAAGAAATGACCGATTCTGTAATCTGAAAAAGACGTCACTGGAGGAGGTCCTTGATGCGGACATCCCATTCAGATCAAGAGTCTGTTGTATCAAAGTGAAAGGACACTTCTCAGCAACAGGACCTCGATAGAGACCCCTTCTCAAGCCACGGGTACTTTTACCGACGGAAGATGCGCATGTTGGCAAAGGACCTCGGCAGCAGGCGGGCGTCACCGCTTCACTCGACTCCATCATACACGGCCATCCtccatttaaatcaaaacagttTTCAGAGGAGGACGAAAATGATGCATTTATCTATACAACAGTTATTCACTTTTGTGTGAAAAATACCAACGAGTAAAGACTTCAGCTCGTAACGTGAGGAGTTATGCTATTTCTGTGCAAGTTTTAAACCCTGAACTTTAGCAGAGGCTGAAGATTTGATTTATGATGAGCTTTACCTGGATCTCAGGAAGAGTCTAAAAGAGGCTTGTGTTTGAAGAGCTAAAGCTATTTATAGCATTGCAAACTACATAGAAAATGACTTATTATTGCAGCAATATCCAACAAAGGCTGGTCGTATTTGTTTTCTCAGACTTCTACAATACCCAAATGTGTCAGAACGTTGTTACATACGAGCCTCTCTCCTTAATCATCAGAAACTGTTTCACTGATATTAACTATTTTAAACCTCTTAATACCACAATGCAAATAAAGGACAATATTCTCAAAATGTGGATTATCACACTATGTTAAGTTAAAAACAGCATCTCAAATTATCAACTGGAAAATCTAACTTTTGATTTGAATGGggttaaaaaaacatggtttaGGTCTACATGCAAATTCATCAGAGCATCAGacttcataaaataaacatgaacttTGTGAATCTGAG

Function

NR:

description
PREDICTED: DNA annealing helicase and endonuclease ZRANB3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000873 True 4641 mRNA 0.51 23 6253900 6289579

Neighbor

gene id symbol gene type direction distance location
AMCG00000874 NA coding downstream 42507 6198591 ~ 6211393 (-)
AMCG00000875 LOC107725256,LOC103367750,LOC106582396,LOC107684456 coding downstream 111323 6127419 ~ 6142577 (-)
AMCG00000866 NA coding downstream 243483 5985104 ~ 6010417 (-)
AMCG00000865 NA coding downstream 330194 5922771 ~ 5923706 (-)
AMCG00000863 NA coding downstream 361146 5860845 ~ 5892754 (-)
AMCG00000880 NA coding upstream 50773 6340352 ~ 6356387 (-)
AMCG00000883 NA coding upstream 261433 6551012 ~ 6556951 (-)
AMCG00000886 NA coding upstream 309273 6598852 ~ 6601477 (-)
AMCG00000887 LOC105022551,LOC103370269 coding upstream 334678 6624257 ~ 6662496 (-)
AMCG00000885 NA coding upstream 375723 6665302 ~ 6678106 (-)
G126767 NA non-coding downstream 304006 5943386 ~ 5949894 (-)
G126698 NA non-coding downstream 681767 5569944 ~ 5572133 (-)
G126665 NA non-coding downstream 789848 5462567 ~ 5464052 (-)
G126631 NA non-coding downstream 881441 5372249 ~ 5372459 (-)
G126563 NA non-coding downstream 1134864 5116054 ~ 5119036 (-)
G126873 NA non-coding upstream 45134 6334713 ~ 6335866 (-)
G126887 NA non-coding upstream 91384 6380963 ~ 6381248 (-)
G126977 NA non-coding upstream 830665 7120244 ~ 7125041 (-)
G127145 NA non-coding upstream 2349017 8638596 ~ 8639883 (-)
G127159 NA non-coding upstream 2474534 8764113 ~ 8764392 (-)
G126700 NA other downstream 680873 5572705 ~ 5573027 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 1271249 4957138 ~ 4982651 (-)
G126427 NA other downstream 1617384 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 2597339 3553047 ~ 3656561 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 3113411 3133876 ~ 3140489 (-)
AMCG00000888 LOC102209482 other upstream 399989 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 1340336 7629915 ~ 7645722 (-)
G127292 NA other upstream 3129417 9418996 ~ 9419325 (-)
G127443 NA other upstream 3985108 10274687 ~ 10278211 (-)
AMCG00000960 NA other upstream 4407277 10696856 ~ 10700364 (-)

Expression


Co-expression Network