AMCG00000875 (LOC107725256,LOC103367750,LOC106582396,LOC107684456)


Basic Information

Item Value
gene id AMCG00000875
gene name LOC107725256,LOC103367750,LOC106582396,LOC107684456
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6127419 ~ 6142577 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000875
ATGAGGTACAGTGCTTCTGCCTTTGGATTTGCTttTGACGCCACGCTGGATGTGTTATCCTCCATCATCGTGCTGTGGCGTTACAGCAACGCGGCCGCTGTGCACTCTGCTCACCGGGAATACATAGCCTGTGTGATCCTCGGAGTTGTGTTCATTCTGTCATCCATGTGCATCTTGGGTAAAGCCATCCATGATCTGGCGACACAACTGCTCCCAGAAGTGGATGACTTCCTGTTCAGCGTGTCCATCCTGAGTGGGATACTGTGCATCATCCTGGCGGTGCTGAAGTTCATGCTAGGGAGGGTGCTGACCAGCAGAGCTTTGATCACAGATGGGTTCAACTCTCTCGTCGGGGGAATCATGGGCTTCTCTATACTAATAAGTGCCGAGGTTTTCCGACACCATCCTCAGGTCTGGTATCTCGATGGGACAATAGGTGTCCTTATTGGGCTCATCATTTTCTCCTACGGAGTGAAGTTGCTAATTGACATGGTCCCTCGAGTGAGACAAACGCGTCACTACGAGAGGTTCGAGTGA

Function

NR:

description
PREDICTED: transmembrane protein 163-like isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000875 True 537 mRNA 0.51 6 6127419 6142577

Neighbor

gene id symbol gene type direction distance location
AMCG00000866 NA coding downstream 117002 5985104 ~ 6010417 (-)
AMCG00000865 NA coding downstream 203713 5922771 ~ 5923706 (-)
AMCG00000863 NA coding downstream 234665 5860845 ~ 5892754 (-)
AMCG00000864 NA coding downstream 271132 5822538 ~ 5856287 (-)
AMCG00000861 ralba,ralb,LOC107746258,LOC107597482 coding downstream 315537 5799381 ~ 5811882 (-)
AMCG00000874 NA coding upstream 56014 6198591 ~ 6211393 (-)
AMCG00000873 LOC107710929 coding upstream 111323 6253900 ~ 6289579 (-)
AMCG00000880 NA coding upstream 197775 6340352 ~ 6356387 (-)
AMCG00000883 NA coding upstream 408435 6551012 ~ 6556951 (-)
AMCG00000886 NA coding upstream 456275 6598852 ~ 6601477 (-)
G126767 NA non-coding downstream 177525 5943386 ~ 5949894 (-)
G126698 NA non-coding downstream 555286 5569944 ~ 5572133 (-)
G126665 NA non-coding downstream 663367 5462567 ~ 5464052 (-)
G126631 NA non-coding downstream 754960 5372249 ~ 5372459 (-)
G126563 NA non-coding downstream 1008383 5116054 ~ 5119036 (-)
G126873 NA non-coding upstream 192136 6334713 ~ 6335866 (-)
G126887 NA non-coding upstream 238386 6380963 ~ 6381248 (-)
G126977 NA non-coding upstream 977667 7120244 ~ 7125041 (-)
G127145 NA non-coding upstream 2496019 8638596 ~ 8639883 (-)
G127159 NA non-coding upstream 2621536 8764113 ~ 8764392 (-)
G126700 NA other downstream 554392 5572705 ~ 5573027 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 1144768 4957138 ~ 4982651 (-)
G126427 NA other downstream 1490903 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 2470858 3553047 ~ 3656561 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 2986930 3133876 ~ 3140489 (-)
AMCG00000888 LOC102209482 other upstream 546991 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 1487338 7629915 ~ 7645722 (-)
G127292 NA other upstream 3276419 9418996 ~ 9419325 (-)
G127443 NA other upstream 4132110 10274687 ~ 10278211 (-)
AMCG00000960 NA other upstream 4554279 10696856 ~ 10700364 (-)

Expression


Co-expression Network