AMCG00000878


Basic Information

Item Value
gene id AMCG00000878
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6305017 ~ 6332100 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000878
caGGTTTTTGAGGGGCATGACCGGCTTGTTCGAGGGCAGCTCTGTTCAGACCTGGACTCAGTGCTGCTGACAGGGACATGGGACTCTTCCTCGGGGCTTCCAGCAGGCTCAATACAACTGACAACGTGGTTGACAGCATTGAAAGGGACCCGGGGTTTCTCCTTTCCACTAGCGGGACACCACAGGTCTATCACTGGAAAACGCATTGGGTCCCACGCTTTTGGTAGAAGCTCCAAGTAACCTTCTCTAATGAGGATGTCTGATACTGTTACTGTAAAGGAAACGACTGAAACAATGAGAGGTTCAGAGGTAGAGGAACATGACTCAACACTAGGAGACAGCCTGACAAAATCAGAAATCCAGGAACAAATCGAGCCGGAGAAAGATGAAAGCTATTGTGACAACAAAAACGAATCCCAGGATAAAATTCAGATCCAGTTCACCCAGTCATTTGATAAGGAAGATCTGCCCATTAAAGATGAAGATGAGCCAGAGAAAAGCACAGACAAGCTGGACAGATCAGATAAGATGCCGAGGAAAATGTTGTCTAGAGaCTCCAGTCAGGAATACACAGACTCCACTGGCATTGACCTTCATGAATTTTTagtaaatactttaaaaaacaaccccAGGGATAGAATGATGCTTCTGAAGCTGGAGCAGGAAATCCTTGATTTTATCAGTAATAATgaAACTCAGCGAAGAAAATTCCCTCCCATGACATCCTACCATCGAATGTTGTTACATAGAGTAGCCGCCTACTTTGGATTAGATCACAATGTTGACCAAACTGGAAAATCTGTCATTATTAACAAAACTAGCAGTACAAGAATACCTGATCAGAAATTTTCAGAACATATTAAAGATGACAAAAATGATGATTTTCAGAAAAGGTACATTCTGAAAAGGGACAACTCAAGCATGGACAAGGATGACAACACGatgCGAATCCGTTTGAAAGATGACCGGAGAAGCAAATCCATAGAAGAACGGGAAGAGGAGTACCAGCGAGCGCGAGAGAGGATTTTTGCACAAGATgCTCTTTGTGCCCAAGAAAATTTTCCACCCGATAAAAGAATCCAGGATGATGAAGCTTCAAATAGTACACAACAAAGACGACAGATATTTAGAGTGAATAAGGACGTGTCCGGTCGCTCGGCAAACAGTCGACAGAGCAGTTCAGAGAACGAGCCCAAGTATTCGGACCCCCGGCCCTGGAGCAGTACCGACTCGGACAGCTCCAACCGCAACCTTAAGCCGGCTATGACCAAAGCCAGCAGCTTCAGCGGCATTCCGGTGCTGATTAGGGGAGACAGCTCGGGGAGCAGCAAGAGCACGGGCAGGCTCTCGAAGACAGGCAAGTCAGGCTGTTCTGAGTCTTCTAGTAGTGTAGGGTCCTCCACGGGTTCGCTTTCTCGCACCCAGCAACCACTTCCTGTTGCAGCTTTAAGCCAGCCCACCCGCGGTGCGCCTCCCGTCTATCCAACTGTCAGCACTAGTAGTTCTCTGTCCTTTGATGGTGGCATGAGTGGGCAAGTGGCGTCTACAACTAATGCTAGCTACTATTTGCTTCCCTTGGAAGCCACAGGGATACCACCTGGCAGTATTCTGATCAACCCTCACACAGGTCAGCCATTTGTGAACCCTGATGGCAGTACTGTTGTGTACAATCCCACCATGGTCCAGCAGCCTATAAGGACCTCAACGCagccgccccccccacctccgCCCCCCCCACCAGTACCACAGCCGCATCATACTGCCAACCACGTCCTCTCACAGCCTATGCGGCCCCTGCAGCCTTCTTCGCAGCCTGTGCAGTACTCTACGATCTCTTACCAACCTCAGCTCCTGACAGTCTCCCCTAGCCAGCAATACACTGTGCAAGAAAACCTGGGTGTCCAGTTCAGCCATATGAACCTCGCCAGACAGCCTTCCAGTGAAGGTCCCGATGCTCACACTGCCATGTACCCCTCATCGGTCGTCCTTCAGCCACCCCAGCAGACTGGCTACATCGTAGCCCCCCCGGGGCAGCCGGTTCCTGCCCCCACCTACTCCACCTCAGCTCCGCCTGTCAGTCAGCAGGTTATTCAGCAGCAAGCATACATACAGCAACCCATGCAGCAGATGGCCACCTGTTACTGTGCTCCCAGCCAGTACCCACACTCCAGCCAGCAGTACCGGCCAGTCACCCCAGTGCACTACAACCCTGCCCAGAGCCAGCCTCTGACGCAGCCCCCTCAGCAGTCAGGTTACCAGACTGTGATGCCAAACCAACAGCAGACCTATCAAAACATGGTAGGAGTTCAACAGCCACAGAATCAAAGTCTAGTAAGCAGCCAGCATAGCAATATGGGAAACCAGATGCAAGGCATGATGGTCCAATACCCTTCCATGCAATCCTATCAGgtATCAATGCCTCAAGGATCCCAGGGCATACCCCAGCAGACCTATCAGCAGCCAATCATAATACCCAATCAGTCAAACCAAGGACCCATACCGGCATCAGGAGTGCAAGTCTATTACAGTGTTATACCACCAAATCAGCAGAATAATATAAGCTCCTCAGTGGGGTTTCTGCCCCCCCCAGGAACGGAGCAGATGCAGTTCCCCCGGACGTCCCCCCCCTGTGGCTCCCAGCAGCACCCCGGCCAACAGTGTGCAGCTGTGGCACCCCCCCATGGCAGCAGCATGGTCCTGATGCAGCTGACATTACCCACAAACCACCAGCCCAGGGCCCACTCACCGACCCAGTGGAAACACCACAAATACTACAGCCTTGACCACCAGAGGGGCCAGAAatccactgaactctcaaatttAGACACTTCACAGAGCAGTCCCCAGCTGGGCAGTCCCGCCCGCTCCCCTGCACAGTCCCCCGCCCCCGCACAGCTCACCAACATGAAGAACATCCGTCCTGGACTCACTTCCATCTCTATCATGCCCCAGTTCTCAAGACCGTTAGTCACCGGCCAAGGTGATGCCCGTTATCCCCTCCTGGGCCAGCCACTACAGTACAACCCTCAGATCCGTCCTCCGCTGCTCCATGGGCCGCACATCATCCCCAACCACCAGGGTCCCCCAGGAATTAGACATGGAGGCAGAGGGAAGAAGCCAACACGGAAAGCACTGTCCACAGATCTTAGTGTAGGTGAACCAGTAATTGGGAGAGTCTTAGAAGTAACCGATTTGCCGGAAGGAATAAGCCGCACAGAAGCCGAAAAGCTGTTTGGTGAACTTTGTAAAGTTGGGGCCATAATTAAATGGATTCCAGATCATCAGCCGCAACAAATGCACTGCGGGAGCGGGGACAGCAACGCGCACTTGGACCACTCGAAGCCCCCTTGTGACTTGGCCTCCACGTACACAATCCTAGCGATGTTTCCTTCAAAACATGCTGCTCAGAAcgcattaataaaacacaataactCCTTAAACAAGTTCAAACTGAGAACTAGCAAGAGGCACTACGAATTTCACAACCTGGAGAGAGCTAGTTCTCAGTAGCAGGCACTGCAGCGTCGGACTGGTAGCCTCGGTTACCTCCAGTTGCATTTACCCCTCTTCCTATTTCGCACTCAGTCGGCTTGATTATAATGGGTTTTCACTTGAGTTGTAGAGACTTTGGGAATGTGTTGTCTTTGTAATGTTCTAGcgatttgggaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaaagaaagttcCAAATatcacatttctttttcagGATTGACTGGAGCATATCAAAGAGCGGCAtgtacaccccccccaccccaccacagttttgttttagttttagttttatcttTGTGAATTCGTGTCCGATCCAAAGCTCTGTTGTAcagctgctttattttgaaattacaggTTTATCGCCTcgttcttttttccccccagaccatttaaagaagaaaaaacaaatccacaaaagAGGATTTCACAGGTTGTCTCTGTTTAGTGTGGTCACGACACAAAAGAGATATCTTGAGCTAGagaatcgttttgtttttgtgccttCCAGACTTCTATACTGTTCATGTGATAGAAAACCAGATGCCTAGATGTAAAGAACAACTTCTACACAACTAAACCATTAAAGGACCCATGCATTTGTACATAAGTTAAATATTAGCGATTCTCTGAAGTGTGAATGTTAAACTGGCAACAGGCACAAATGAGAACTGAATCCTTGGTTCAAAATACCTggttttaacttaatttaaaaaagtaatatctCCCGAATGGTGTACTTTTAACGTTATGCTCACCGCTTTCAAATGTTCAGTACCACtttctcccccacccctccctgtGTATCTCCAACTGACTCCAACATTTCattcaaaattacttttttaattacgTTCCATGACAAAAGGGGCACTGGAAATCAGTTTGCACATTGATACAACTGAAAcctatttctttttattttactttcctcCAAAACGTGTGGATTATGAAAGGCTGTACAATGTTTGCTGGCGcaagtcatttttatttcagtttgaaaccaataaatgtttacaaaataccA

Function

GO:

id name namespace
GO:0005871 kinesin complex cellular_component
GO:0005875 microtubule associated complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000878 True 4541 mRNA 0.48 24 6305017 6332100

Neighbor

gene id symbol gene type direction distance location
AMCG00000870 rab3gap1,LOC106586310 coding upstream 52247 6232529 ~ 6252770 (+)
AMCG00000871 NA coding upstream 83612 6218380 ~ 6221405 (+)
AMCG00000869 NA coding upstream 106494 6194058 ~ 6198523 (+)
AMCG00000872 NA coding upstream 111226 6189970 ~ 6193791 (+)
AMCG00000867 acmsd,LOC107555338,LOC107723660 coding upstream 115955 6181905 ~ 6189062 (+)
AMCG00000877 NA coding downstream 2648 6334748 ~ 6340034 (+)
AMCG00000879 NA coding downstream 24994 6357094 ~ 6361025 (+)
AMCG00000876 NA coding downstream 30107 6362207 ~ 6365270 (+)
AMCG00000881 rnd3,LOC108425727 coding downstream 86782 6418882 ~ 6426938 (+)
AMCG00000882 NA coding downstream 199901 6532001 ~ 6541611 (+)
G126805 NA non-coding upstream 91610 6213182 ~ 6213407 (+)
G126782 NA non-coding upstream 98984 6203698 ~ 6206033 (+)
G126781 map3k19,LOC106586307 non-coding upstream 103412 6200909 ~ 6201605 (+)
G126714 NA non-coding upstream 505382 5719268 ~ 5799635 (+)
G126697 NA non-coding upstream 733085 5569970 ~ 5571932 (+)
G126886 NA non-coding downstream 48874 6380974 ~ 6381195 (+)
G126919 epc2,LOC106586324 non-coding downstream 341512 6673612 ~ 6674227 (+)
G126898 NA non-coding downstream 353329 6685429 ~ 6748609 (+)
G126982 NA non-coding downstream 899253 7231353 ~ 7254142 (+)
G127033 NA non-coding downstream 1277517 7609617 ~ 7613856 (+)
AMCG00000848 NA other upstream 839036 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 4490860 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 4606444 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 4698986 1599696 ~ 1606031 (+)
G125561 NA other upstream 5901426 339640 ~ 403591 (+)
G127134 NA other downstream 2285099 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 3768183 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 5667564 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 5956850 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 8818175 15150275 ~ 15184392 (+)

Expression


Co-expression Network