AMCG00000879


Basic Information

Item Value
gene id AMCG00000879
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6357094 ~ 6361025 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000879
cccgcgcagaactgcggaccaAAACAACACGCAAAGCCGCTGTCAGACGCGGAAGCGCTCACAGTTCAGACCCCAGCCCGCTGCTGCGAGGAAAGCTGCTTCAGgtaaaaaggtaaaaatggGTTCAAACGAAGATACGGCTTCTCCACTTTTAAATGGAAACTCCCTTCAAAGTGAAACCTTGTCCCCTGAGGAGCAGCAGGAACTCAAAGCAGCTTTGGAAGAACTGGAAGAGTGGAAGCTAAAGCACGAAAAGGCAGACACTGAAAAGTCCAGGCTGATTTTGGAAAAATTGgatacagaagaaaataagaaaagagcCGAGAGGGAGGCATTGGATCTCCTCAAACAGCAGGATCTTAATACCCACGcgtttaataacaaaaaaaagacaatggaGGAAGGGCTTCTGGACATTCAGAAAAAGAATGATGCGCTGAAACAAAAACTGAAGGACTATGAAGAACAGCtacaactgaagaaaaatgaaCAAGCATCTCTCCAGCAACAGCATAAGATAATCGCAGAAATCCCAGAAAAGAAAGTGAAGTTCACCAAAACCAGAAACTCCGAAGACTCCGAAGACTCTGAAGACTCTGTCAACATTGAAGGCCAGTTCACCATTATACAGAGACCCTCGATCACTCTGAAGGGAGGCCAGGCACTCATCACCTTTGAGGAAGAGAAAGTGGCACAAAGAATCTTAAAAATACCCAAGTGCACAGTGACGTTTGACAACGCCAAGATGGACGTGAAGCCGTTCAATGTGATGATGGATCCCTCTGTCAAATTTGAGGTGCACTTCAGTGTGTCAAAGAAGACCGTTAAGTTTTCGAACGCTCCTCCCGTTTTATCAGATGAGAGGATGAGAGACAGGCTGGAGATGAGCTTCTCAAAGCCCAGTCTGGGAGGTGGGGAGGTGGAGTCTGTGGAATACAACAAGGAGTCCGGGACAGGCCTCGTGACGTTTCTTAACACTGGAGGCATTGAAGATGCCCTTGATGAGGAGGACCTGCAGGACAATTTGGAGATCCATTTTCAGAAACCCAGCAACTACGGGGGGGAGGTGGAGAGCATCAGATACATTTCCAAAACCACCGGAAGTGCCGAGGCCTACTTTAATGAAGACACTGTTGAAGCGGAA

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A
ko05162 Measles

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000879 True 1144 mRNA 0.47 9 6357094 6361025

Neighbor

gene id symbol gene type direction distance location
AMCG00000877 NA coding upstream 17060 6334748 ~ 6340034 (+)
AMCG00000878 NA coding upstream 24994 6305017 ~ 6332100 (+)
AMCG00000870 rab3gap1,LOC106586310 coding upstream 104324 6232529 ~ 6252770 (+)
AMCG00000871 NA coding upstream 135689 6218380 ~ 6221405 (+)
AMCG00000869 NA coding upstream 158571 6194058 ~ 6198523 (+)
AMCG00000876 NA coding downstream 1182 6362207 ~ 6365270 (+)
AMCG00000881 rnd3,LOC108425727 coding downstream 57857 6418882 ~ 6426938 (+)
AMCG00000882 NA coding downstream 170976 6532001 ~ 6541611 (+)
AMCG00000884 orc4,LOC107577955 coding downstream 372782 6733807 ~ 6743970 (+)
AMCG00000890 NA coding downstream 927258 7288283 ~ 7307656 (+)
G126805 NA non-coding upstream 143687 6213182 ~ 6213407 (+)
G126782 NA non-coding upstream 151061 6203698 ~ 6206033 (+)
G126781 map3k19,LOC106586307 non-coding upstream 155489 6200909 ~ 6201605 (+)
G126714 NA non-coding upstream 557459 5719268 ~ 5799635 (+)
G126697 NA non-coding upstream 785162 5569970 ~ 5571932 (+)
G126886 NA non-coding downstream 19949 6380974 ~ 6381195 (+)
G126919 epc2,LOC106586324 non-coding downstream 312587 6673612 ~ 6674227 (+)
G126898 NA non-coding downstream 324404 6685429 ~ 6748609 (+)
G126982 NA non-coding downstream 870328 7231353 ~ 7254142 (+)
G127033 NA non-coding downstream 1248592 7609617 ~ 7613856 (+)
AMCG00000848 NA other upstream 891113 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 4542937 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 4658521 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 4751063 1599696 ~ 1606031 (+)
G125561 NA other upstream 5953503 339640 ~ 403591 (+)
G127134 NA other downstream 2256174 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 3739258 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 5638639 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 5927925 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 8789250 15150275 ~ 15184392 (+)

Expression


Co-expression Network