AMCG00000882


Basic Information

Item Value
gene id AMCG00000882
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6532001 ~ 6541611 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000882
ATGGCGCTCTGTAATAGAGCTAGGCTGGTGACCTATCTGCCAGGGCTTCATATCCTTGTGCGGAGGATTGCAGGGGCCAGATCTTTCTCTGCAGCCGGCTCTTCGGGGTCTGACGAGCCTTATGTTGCTGTTACGCCTATTGACATGGgacCCAGAACTGTGTGGCCGGATGAGAAAATGGGCCCGTTCGGACCTCAGGACCAGCGCTTCCAGTTGCCGGGGAATGCGGGTTTTGACTGCCACCTGGAGGGTACGGCCGATCAGAAGAGATCACAGGTGCACAGGACTGCACCGGATGTGTTGACTGCTCCCTTGAACAGCGAGCGCCATGAGTTCATACTGGCCCAGTTTGTCAACGAGTTTCAGGGGAGAGAAGCTGCTCCCACATCCCAGCAAGTTAGCAGAGCCGAACAGTACTTTGAAACTTCAAACGTAGAATGTGCAATACAGACCTGCCCAGAGCTGCTAAAGAAAGTTCATCGGTGGAGCCAAAGAGATCTGCTATGCTCTCCGGATGGCAGGATACTGGGCAGACTTTATAGACCCTTCTTCCGGGCTGGCACCATTGATGTGTGCATCATGAGACCGAGGCGCCACCATCTCCTGACCTTCCAGAGCCACAGACTTGGGGTAGCCAGGCCACATCAAATAAGGACTGAGCTTTACGGAGAGTTTGTCCGGGTCATCTCGTGA

Function

GO:

id name namespace
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006518 peptide metabolic process biological_process
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko00190 Oxidative phosphorylation
ko03010 Ribosome
ko04714 Thermogenesis
ko05012 Parkinson disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000882 True 693 mRNA 0.55 7 6532001 6541611

Neighbor

gene id symbol gene type direction distance location
AMCG00000881 rnd3,LOC108425727 coding upstream 105063 6418882 ~ 6426938 (+)
AMCG00000876 NA coding upstream 166731 6362207 ~ 6365270 (+)
AMCG00000879 NA coding upstream 170976 6357094 ~ 6361025 (+)
AMCG00000877 NA coding upstream 191967 6334748 ~ 6340034 (+)
AMCG00000878 NA coding upstream 199901 6305017 ~ 6332100 (+)
AMCG00000884 orc4,LOC107577955 coding downstream 192196 6733807 ~ 6743970 (+)
AMCG00000890 NA coding downstream 746672 7288283 ~ 7307656 (+)
AMCG00000891 NA coding downstream 802259 7343870 ~ 7346591 (+)
AMCG00000892 NA coding downstream 1286061 7827672 ~ 7841512 (+)
AMCG00000893 NA coding downstream 1318455 7860066 ~ 7942406 (+)
G126886 NA non-coding upstream 150806 6380974 ~ 6381195 (+)
G126805 NA non-coding upstream 318594 6213182 ~ 6213407 (+)
G126782 NA non-coding upstream 325968 6203698 ~ 6206033 (+)
G126781 map3k19,LOC106586307 non-coding upstream 330396 6200909 ~ 6201605 (+)
G126714 NA non-coding upstream 732366 5719268 ~ 5799635 (+)
G126919 epc2,LOC106586324 non-coding downstream 132001 6673612 ~ 6674227 (+)
G126898 NA non-coding downstream 143818 6685429 ~ 6748609 (+)
G126982 NA non-coding downstream 689742 7231353 ~ 7254142 (+)
G127033 NA non-coding downstream 1068006 7609617 ~ 7613856 (+)
G127038 LOC100136012 non-coding downstream 1088291 7629902 ~ 7645720 (+)
AMCG00000848 NA other upstream 1066020 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 4717844 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 4833428 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 4925970 1599696 ~ 1606031 (+)
G125561 NA other upstream 6128410 339640 ~ 403591 (+)
G127134 NA other downstream 2075588 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 3558672 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 5458053 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 5747339 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 8608664 15150275 ~ 15184392 (+)

Expression


Co-expression Network