AMCG00000887 (LOC105022551,LOC103370269)


Basic Information

Item Value
gene id AMCG00000887
gene name LOC105022551,LOC103370269
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6624257 ~ 6662496 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000887
CCGGctgctaaaataataaaacagactgtGTCTACTGTTTTGTTCAATTGCTTTCCGACTGGTTGAAAACGGTCTGTTTTtgaataagaataattaaaacacacctTGCGAATGCGACCATCCGGAGCAGAACAATCGATCGGAACGGACCGCTGCCATTGATTCCTCGCCAATGACAATGCTGTGCTGAGGCTCATCTTCTCCTTTGCAATCCTTGGCGAATGTTAGCTTTTGCTGAATTGAGGGTATAAAAGTgaatttcacattgtttttttcctgctggGATAGACTGCGATGGCGGATCCAGCTGAATGCAGCATAAAAGTAATGTGCCGTTTCAGGCCATTGAATGATTCCGAGATCTCAAGAGGAGACAAATATATTCCCAAATTTAAGGACGATGACACGGTGGTTATAGGGGGCAAACCGTATATCTACGACAGAGTTCTCCCACCAAACACTATCCAGGAAAATGTGTACAATGCCTGCGCTAAACAGATTGTTAAAGatgtTCTTGGCGGTTACAATGGCACCATCTTTGCTTATGGCCAGACGTCCTCAGGAAAGACACATACCATGGAGGGGAAGTTGCATGACCCTCAGCTGATGGGCATCATTCCCAGAATCGCACATGACATCTTCGATCACATTTACTCCATGGACGAGAACCTGGAGTTCCACATCAAGACAAACCTGGCCGTCCATGAGGACAAAAACAGAGTTCCCTACGTGAAGGGCTGTACAGAGAGGTTTGTGTCTAGTCCTGAGGAAGTGATGGATGTGATAGATGAAGGCAAAGCCAACCGCCATGTTGCTGTAACAAATATGAATGAACACAGTTCCAGGAGTCACAGCATCTTCCTGATTAATATTAAGCAAGAAAATGTCGAGACAGAGAAGAAGTTGTGCGGGAAGCTGTACCTCGTAGACTTAGCTGGAAGTGAGAAGGTCAGCAAAACTGGGGCAGAAGGAGCTGTATTAGATGAGGCTAAAAATATCAATAAGTCTCTGTCGGCGCTGGGTAATGTCATCTCTGCACTGGCGGAGGGAACCaaaactcACGTTCCATACAGAGACAGCAAGATGACCAGGATTCTTCAAGACTCTCTCGGTGGCAACTGCAGAACCACAATCATCATCTGCTGCTCTCCCTCTGTCTTCAATGAAGCCGAAACCAAGTCCACCCTCATGTTTGGTCAAAGAGCCAAGACCATCAAGAACACAGTGTCTCTGAACCTGGAGCTCACCGCGGAGGAATGGAAGAAGAAATacgagaaggagaaggagaagaacaaGAGTCTGAAGACGGTCATCCAGCGCCTGGAGATGGAGCTGAACCGCTGGAGGAATGGTGAGGCAGTTCCTGAGGAAGAGCAGCTCAGTGCTAAGGATCAGAAGACATTTGAGCCATGTGACAACACGCCCATCATTGACAATATGGCGTCCTCTATCGCCCCTGTGTCTGCGGAGGAGAAGAGCAAGTATGAGGAGGACATCAGCAACCTCTACAAACAGCTGGATGACAAGGATGACGAGATCAACCAACAGAGCCAGCTGGCCGAGAAACTCAAACAGCAGATGCTGGATCAAGATGAGCTGTTGGCATCAACCCGGCGGGACTACGAGAAGATCCACGAGGAGCTGACCCGGCTGCAGATGGAGAACGAGGCGGCCAAGGACGAGGTGAAGGAGGTGCTGCAGGCCCTGGAGGAGCTGGCTGTCAACTACGACCAGAAATCCCAGGAGGTGGAGGACAAGACGCGTGCCAACGAGCAGCTGGCCGATGAACTCGCCCAGAAGACGACGTCGCTGATAGCGGTGCAGAGGGAACTCAACCAGCTGCAGGAGCTCAGTAACCACCAGAAGAAAAGAGCAGCGGAGATCCTCAACCTGCTGCTGAAGGACCTCAATGAGATCGGGGGCATCATTGGCACCAACGACATCAAAGTGATGACAGAGGTGAACGGCGTCATAGAGGAAGAGTTCACCATGGCTCGCCTCTACATCAGCAAGATGAAGTCCGAGGTGAAGTCGCTGGTGAACCGGTGCAAGCAGCTGGAGACGTCACAGTCGGACACCAGCCGCAAGATGCAGGTCAATGAGAAGGAACTCGCCTCCTGTCAGCTCCTCATCTCCCAGCACCAAGCAAAGATCAAGTCCCTGACGGATTACATGCAGAACGTGGAGCATAAGAAGCGGCAGCTGGAGGAGATGCAGGACTCTCTCACAGAGGAGCTGGCCAAGCTGACCGCTCAGGaAAAAATGCATGAAGTGTCCGTGATGGACAAGGAGAAGGAACACATGAGTTTGCTCCAAGATGCTGAGGAGATGAAgAAAACTCTTGAGGAGCAGATGGAGAGCCACCGAGAGGCGCATCAGAAACAACTGTCCCGGCTGAGGGATGAAATCGaggagaaacagaaaatgattgaTGAGCTCAAAGACTTGAATCAGAAGCTGCAGCTGGAGCATAATAAACTCCTGTCCGACTACGAGAAGCTCAAGGTTGAGGAGCAGGAGAAGGACATGAGGCTGCAGAAGCTTGTTATCCTCAATGAAAAAAGAGAGCAAGCAAAGCAGGACCTCAAAGGCTTGGAGGAAACCGTGGCCCGGGAGCTCCAGACACTTCACAACCTCCGTAAACTTTTTGTTCAAGACCTCACGACTCGCGTCAAGAAAAGTGCTGAACTGGACTGCGATGACGGAGGGGGGAGTGCTGcgcagaaacagaaaatatccTTTCTTGAGAACAACCTGGAGCAGCTTACAAAGGTTCACAAGCAGCTGGTTCGTGACAATGCAGATCTGCGCTGTGAGCTTCCTAAACTGGAGAAACGTCTGCGAGCTACAGCTGAGAGAGTTAAGGCCCTGGAGACGGCACTGAAGGAGGCCAAGGAGAACGCCATGAGGGACCGCAAGCGCTACCAGCAGGAAGTGGATCGCATCAAGGAGGCCGTGAGGGCCAAGAACATGGCCAGGCGGGGACACTCCGCTCAGATCGctAAGCCTATTCGTTCAGGGCATTACCCAGCATCCTCTCCGACAACTGCTCACACCGTccggggagggggaggaggctCGTCAATCTCTGGCTACTACCACCACAACAAATTGAATATTGAAAACGCATGTACAGAACACCTTCCCATCAGATCACTTTTCCTGCTTAGAGTCAACTTCCCATCTTCCAGAGTCCTTGACAGTTCATCAACCAAAGTCTTCACTGAAGCTAAACGTCTAGAAACTCTGCTTTCCCTTACAGCGATCTCCGAGAGCCATTCGACATTTTGCTACTGTATGTTGTAGCCAGagaaacataaaagaaaaacagactttaGTTGCTGACAAAGCGCTTTTTCTCCATTAACTATGTTGATCAGAAAGCAAGTAACGAATTGTGTAAAATCTTTTGGCAGGTCAGTGTCTTCtactctgtctctctttgtaTGATAAAACTGTCATTTTCTATAGTTTTTGGGTATGTGAGGTTAATTGCTGCTATATTATAATACTGTACACATTCTACTGGTCTGATTAACATTTGCAAAGgtaaaaaaactgaatttgattTGGAGTTTCCTCAGTCTGAAATCAAGTTAAAAAGTAAACAGATTGTATTGGTTGTGAGCACCTAATTGTATCGCTGAGTAAATGGGCGTTGATTTGGCTGGATTTCATCACGCTGAAGTAAAACACTCGAGATGGAGGTAATGGGACGCATTAAAACAGAGGAAtaatttttcactttattttttaggaAAGGCTCACAAGCGAGCTTTACAGAATGACTTTCCATGTAGTGCGTACACTAATTTATTATGGGGAGACACACATGTCGAGCcaattgtttgctttgttttggagTATTTGTTGTTGGGTATTATACATTTGAGTTTCacataaaattgtaaaaaaatgatatgagaagagaaataaatgaaagattaCTTTTGTGAATCTGCAGTTCTGTAATGACTCCAGCAAAAACATGGATAGATGACCCATTTTAAACTTGGTTTGTAGGTACGGTCGTCTCAAAATGTAAACGTGATCAAGGCGCTTTGTAGAAGTGCTGAAGCCATATCAGGAGAATACAAAGGGATAATGTGGGAGTCCCTAAATCCTGCCCTTTTATGGGCACAACATTCATCCAATGCCATGTTTCTTGCTTGTAtagtaaacatttaaactacGACCTCcctggaaaatgtgtgtgtgcatgggggGAGTCGGGTTTGAAATGTGAACCCAAACATAAGATATCTCCAAATGTTTTCTCCCTACCAGAGGAACTCAAATGTACTGATTCAATTGTCTTACACCTAACATACTCTAATACTCGAGTTGTAGGATTTAAATCTTTCAGGTGGTGtacttcatttaattatattcaaataCTCTCATACTCCAGGTACAAAACTTATTTATCTACAGAATACACTAGGACTTTAAAACCAGAGAAGGCATATGTAGTTTTCATTCAACCAAGCAAAAGTTTGATGTCTTTTTTAACAGTCTCTGCTTTGTACAATAAAGGCAGATACATTCTGTGTTATGATGCTGATCAGGTATTCAGTTAATCTAGCAATAAAACTGAAAGTGTTTTCCTCTCATGCACAGGGCAATTTCTGTTAAGGATGACATTGAAAAACTAGTTTGCTGCAGAAGGAAACTCCTCCAGGGTCAGTCTGCATGTCTAATACGTTTCAGATAGCGTTTGGTGACACAATGCCGTAAGTGTCATACACTTCAGACAGTTTACAAatgtgtgaatacattttatttatgttttaactgGAGTGGCTGATTATCCTTTACTTTAATATCCTCCGCATTCCCAGAGTGTATCAGCTCGGCTCACTTCTACAAACCTCTTACTAATAAAGAACCAATGGAGACAGACGTGTGTCCTTGTAATCTACATCTACTAATCTAAAGTGGAGGCTTTACCAGTTGTGCCACTCATGAAACCTCCCGCCGTGCTTTTAATACCTCTCTAGCCACCCCTGTTTTCCCTGGTACTATACTGATACTGCACACATATACTATGAATTCTTAAATGGATGACACCATCTCATTGGTCTTGTTTTAGCATCAAAGAAATGGTGATCTCACTTCTACAAAGTGGGTTCTTTAACAAATTTGGGTACAGAAACAGTCCCACTTCGATAGGATATGTACATATGTTTCAGTATGTCTTAATCCTGTCTGAGATGGAACGCCCTCTTcatctaatacatttttgtgtccACCAAATTATTTCATTCTCAGAGATGATACATATTTGCCAAATCCTGTGTTGATTTTTCACAAGATCAGTGACAACCACATGCACTTTGCTCAGACTCCAACTGATGAAAAAGTGTAGTACATTAACTTGTAGTTGGTCATTAATTAAGCTGGTCATTAATGAACATCTGTGGTTAGGCTACAAAATAACTGCTTCCTTATTTGAGTATGTTCCCTTGTTTGTTTCTAAGCACCATTATTACATGAGTGTCAGGTAATACAGATACAGCTGATACATGTCTGTGATgcgtttcattttcatttgtccATTAACAGTGATGTCTGATTCATATAAAACTGCTGTTGAACTAAATTGCTTCAGTAATTGTATACCAGGGATTTAAATAAGTAACATATTATAAAGCACAGTCATCTAATGAAATTATTATGCAGACATAATATCACTTACATAAAACTCTTTAAATtcatttggaaatgtaaatgtgttaattcCATAAAACtactactgtatattttttattttttattatttttcaatgactATGTTATGAATTGCTGACttaaaatcctcatttaaataaaaataaaacagaaaacgtAGGTATACAAAATACACAGGAGTTTTTACCAGttggtaaaaaagaaaagaaaaacaaaagctgtgcataaattgtatttattgttcataGTTGTATTAAATGATGAAACctacatttcttttgtttttatataaaaactttattttgttttgttttttgaagtattttctgTGTAGATAAATGAATGCCAACATTTCTTATGCTTGTGAATATTCACAAAACTGGTAACTTTAATCGTATTTATTTCTAACTGTATACGTGTCTGATTATTTCTCCTGTTGATATAAAAGACCCCCAATACAGAAACTTATAATGAAGtgcttatgttttttgtttgaatagCACAAAAGTACAGaaacgtttgtttgtttgtttacccaCCATTTTGTGCAGAGTCTgttgttttacttaaaaaaatacattttctggaaGATGATCAATTTCAAACTGCAGGAAGTTCGCTTCTGCcatcactgtattttttttttttattgagagaAAATGATCTTATTCACCTCTAGTTATAGGAGGAAACCTACAAATCTGGTAACTATTTGAATCGTTCTAATTCTCTTACAAATGAtctttaatcaaacaaaaaatggaaTTAAAGAACAGAATCAAATATTTGTCCATGTTCTCTTCTTGTGCAGAATCCATCTCTCTGTCCGAAGTAGTATGTTTAGAAAATGAATTTCAGTGTGTTGTAACAtatgtttgtttagtttgtgaaatgtgtgcttgtgtacTGCAGACATGTCATGACCATGCATCTGTAACATATCGTATATCCGGGGGAGAAGGTGGGCCAACTCAATCATGTATTCAGTGCAAGGGAAAGCTCTGACACTGTAAGGTTTTGCTTCACGGATGAATTCAATCAATAAATGGATGGCTTTCAATCCTGTTATAACCGAGCTGTTCAGTAAACGTTCAGTGGACTTATACTGATGACTGCATGGTGtaaaaatccttttaaaatgtcaagagtactaaataaagtcaaattcaaCTTTACA

Function

NR:

description
PREDICTED: kinesin heavy chain

GO: NA

KEGG:

id description
K10396 KIF5; kinesin family member 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000887 True 6868 mRNA 0.42 25 6624257 6662496

Neighbor

gene id symbol gene type direction distance location
AMCG00000886 NA coding downstream 22780 6598852 ~ 6601477 (-)
AMCG00000883 NA coding downstream 67306 6551012 ~ 6556951 (-)
AMCG00000880 NA coding downstream 267870 6340352 ~ 6356387 (-)
AMCG00000873 LOC107710929 coding downstream 334678 6253900 ~ 6289579 (-)
AMCG00000874 NA coding downstream 412864 6198591 ~ 6211393 (-)
AMCG00000885 NA coding upstream 2806 6665302 ~ 6678106 (-)
AMCG00000889 acvr2a,LOC103040899,LOC105016248,LOC106586327 coding upstream 85831 6748327 ~ 6752464 (-)
AMCG00000898 NA coding upstream 709424 7371920 ~ 7454374 (-)
AMCG00000896 NA coding upstream 940761 7603257 ~ 7618404 (-)
AMCG00000897 spopl,LOC107658226 coding upstream 1556340 8218836 ~ 8232120 (-)
G126887 NA non-coding downstream 243009 6380963 ~ 6381248 (-)
G126873 NA non-coding downstream 288391 6334713 ~ 6335866 (-)
G126767 NA non-coding downstream 674363 5943386 ~ 5949894 (-)
G126698 NA non-coding downstream 1052124 5569944 ~ 5572133 (-)
G126665 NA non-coding downstream 1160205 5462567 ~ 5464052 (-)
G126977 NA non-coding upstream 457748 7120244 ~ 7125041 (-)
G127145 NA non-coding upstream 1976100 8638596 ~ 8639883 (-)
G127159 NA non-coding upstream 2101617 8764113 ~ 8764392 (-)
G127229 NA non-coding upstream 2404344 9066840 ~ 9083586 (-)
G127275 NA non-coding upstream 2695852 9358348 ~ 9360596 (-)
G126700 NA other downstream 1051230 5572705 ~ 5573027 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 1641606 4957138 ~ 4982651 (-)
G126427 NA other downstream 1987741 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 2967696 3553047 ~ 3656561 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 3483768 3133876 ~ 3140489 (-)
AMCG00000888 LOC102209482 other upstream 27072 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 967419 7629915 ~ 7645722 (-)
G127292 NA other upstream 2756500 9418996 ~ 9419325 (-)
G127443 NA other upstream 3612191 10274687 ~ 10278211 (-)
AMCG00000960 NA other upstream 4034360 10696856 ~ 10700364 (-)

Expression


Co-expression Network