AMCG00000888 (LOC102209482)


Basic Information

Item Value
gene id AMCG00000888
gene name LOC102209482
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6689568 ~ 6733817 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000888
ATGAATGGAGGAAAGGAATGTGAAGGAGGGGACAAGGATGGGGGACCACCTGCTGCCCAGGTTCCCATAGGCTGGCAGCGCAAGGTGGACCCCAATGGAGTGGTTTACATAAGTCCCAGTGGCTCGGTGTTGGCCTGTCTGGAGCAGGTAAAAACCTACCTCCTGACAGATGGGACCTGCAAGTGTGGCCTGGAATGTCCTCTCATCCTTCCTAAGGTGTTCAATTTTGATCCTGGGGCTGCTGTCAAGCAGAGAACGGCAGAGGATGTGAAAGCAGATGAAGACGTCACCAAGCTCTGCATCCACAAAAGGAAAATTATTGCTGTTGCAACGCTACACAAGAGTATGGAAACACCACATCCTTCTCTAGTTTTGACCAGTCCCGGTGGTGGCACAAGTGCAACACCAATGGTCCCTACACGTTCTGCTACTCCAAGAGCAATAAGGAATAAATCACATGAAGGAATACCTAATTCTGTCGCCCCAGAGTGCAAGAATCCATTCAAGATGATGATGGCAGGCCAGAGGCATTATCAACAGGAATTAACTGCAGGTCAACAACAAGAGCTTTATGCTGGCTATCCAAGACAAAGGCTTGGGAGCAATGACCATGGGCAGAAGTCTCCTTATCGTGGCAGTCATGGTGGGATGCTGAGTCCCGCATCATCTGGATCTCAGATATATGGTGATGGTTCGCTCTCTCCCAGGACGGACCCTTTGGGTAGCCCAGATGTTTTCACACGGAACAATCCCGGATTTCACGGAGCAAACAACGCTAGCCCCATTCACATGAACAGCAGGACTCCGCTTTCTCCTCCTGCTGTCCTGCATCATAACTCTCCTGCACAGTCGTCATGCGCAATGGCAGGAAGGACTAATATACCTCTTTCTCCTACTGTTACAACAAAAAGCCCCGTAATGAAAAAACCCATGTGTAACTTCCCTGCTAATATGGACATGCCACGAGCAGTATTTCACCACAAACCCCAGCAAGGGCCCCAtcctccacctccaccccccCTTCCACCTTCCTGTGCTCTTCAGAAAAAGCAGATGACTTCAGAAAAGGATCCCCTCGGCATTCTGGATCCGATTCCCAGTAAGCCAGTTAACCAGAATCCAATGGTCATGAACCCCTCTAACTTCCAATCAAATGTCCACTCTCAGGTACCTATGATGAATGTAAACATACCCCCTGCTATCGTTCCTTTGCCAAGTAACCTCCCTTTGCCAACTGTTAAACCTGGACCCATCAGTCATGGCACCCACGTTCAGAGAGGTCAGCACACAGCTTCCACCTCTATATCGCCCTCCCCTGTGACATCACCAGTGCACATGATGGGGCCTGCTATGGGGAGGATGGAGGTATCTCCACAAAGGTCACGCTCATCTTCCACCTCTTCAGACCATGGGAGCTTCATTATGCCGTCAGGTCCTCAGGGTTCCTGTGGCAGCATGAAGGTTCCTCCCAGGTCTCCCAGGTCATCCATGGGTTCTCCAAGGCCTTCTATGCCTTCAAGTCCATCAACGAAGCCAGACGTGCTCCATCAGTACAAAGACATCCCCAATCAGTTGCTCGTGGGAATGAGCAATGTGCTCAACAGTCAGCCCAATTCGATGTTTCCACCAGTTTCTGCTGGAAACGCTCCCCAAAAGAATCACCCGGGCCTGCTGGGAATGCCCCTTAATCAAATCTTGAATCAGCATAATGCTGCTTCGTTCCCAGCAAGTAGTTTACTGTCAGCAGCAGCCAAAGCACAGCTAGCGAATCAAAACAAACTGACCGgcaccaacaacaacagcagcggAGGGAATAGCAGTACCAGTAGTGGTAGCAGCAGTGGCAACTCTGGTGCTGTTGGCAGTGGTGGCAATGGAGAAGGGCACAGcactttaaatacaatgtttccTCCTAGTACTAACATGTTGCTGACGATGAGTGAAGGGCAGAGCGGACGTGCAGCACTACGTGACAAGCTTATGGCTCAGCAGAAAGATCCTCTGAGAAAGCGAAAGCAGTCGACCAACACGGTTTTCAACATGCTGAAGTCCCAGATGAGTGCTCCAGGAGCTCCCAAGCCTGGACCACCTGACCAGCTTAGGAAACCTGGGCAAGGTCCTCTTCCCCCCAATAACTCCATGGCTCAATTACTCCAGTCCATGAGCTGTCAGAGTTCCAACATGGCTGGAAACAATGGGGCTGCTTGTGTGAGCTCCAACTCTGGCATGCCATGTTCCTCCAACCAGTTGCATTTTCCAGACAACAATCTGACTTCCGGTCCGTCACAAAACCTGCCGGTGCAACACCTCCACCCCCGAGGGAATGGAATGCACTGCCAAAACGTCGACACTAACTTGGTTCACGGGGGAGGCCACGGTCCACATGGCCAGTTtgctggtctgatgaatcagaTGCAGGCTTCTGGGAATTGTGGGGTACTTGGACAGGCTGGAATAGCTTTAGGAAATTCTATACTTGGACATCCTAACCCTCACCAACAccaactgcccccccaccaccaccaccaccaccatcatcaccaccaccaccaccaccaacaccaaCAGCAAAGCAAGCCTCATGCAAGGAATCAAGCCGCCTGTGCGCCGATGGTACCGAACAGTAATGGAAGCAACTGTGGCCAGGTGATCTCTGATGCCGGCATGAACCAACAGCAACAGCTGCAGCAGCAACAGCTTCTAAACCAGAATCTGCTAAACATGTTACCGGCTCCATCAGGAGACAGCAAGTCTGAGATCAATCTCCACTCTTTGGGCCTCCTAAACCCCAACCTTAACGCTGCTTTGGCTTTGCTCTCCGGTGATATGGACGGGCACTCTTTGCCGCCGGTCCAGGTCCAGCTCCTTGCAGCCCTGCTGCAGAATCAGGCCCAGGCTGCTGCCATGCTTCCACTGCCGCCTTTCAACTTGGCCCTCCCTGACTTgttacagcagcagcaggacagCAATACTTTACCTTCCATGCCTCCAATGCCCATTCTGCCTGACCATTTCCAACATAGCCAGTTAGATGGCAATCAAGCAGAGGCTTTACTGTCCCACCCACTGGTGAACTCTTTAGTGGGCCTTTCAGGCAATGACACTACTGCTAATCCTTTACTCCTCCCAGCTGTCACTGGGGCCTCAGGGCTAATGTCCTTGAATCCCCAGCTGTTGGGAAGCCTTCTGAACTCTGCAATGGATAGTACTACTAATCATCCTGAGGTTCCCATAGCAACCTCCTCCCAGGCAACCACTACCACAACCactacatcatcatcatcactggcAGCCATGGCTGTCTCCTCACTGGGTGGGACAGCTGTAGTGTCAATGGCAGAGACTCTGTTGAACCTTTCAAACAACTCTGGGAGCACAACAGGACCCTCCAAACTCCTCAGTGGTTCAGTGATGCCACAGCTGCTGAACCCTCTGCTTGGCACAGGGCTACTTAGTGATGCCTCTTCATTAAATAACAGTCTGAACAACACACAGCTGGGTAACATTCAGTCATTGATCAACAACAGCCAGATGTTTCATCAGAACCAACAGCTGCTCCAGGGCCTGCATGGGGGGCAGGGCATTCCTGGGTTCCAAGGACAGCACCCTTTTCCCGAGAGCCCCTTCCCGGACAATGCCTCAAACCCCATGGCTTGCCTCTTTCAAAACTTTCAGGTGAGTTTGCCTGAGGATATTACGGCACCCAACAAACAGATGACCGCTCAGTCTGGGATGACATCGCTCCAGGAGAACTCCAACGTGGCTTCACTCCACCCATTCCGCGACGGATCATGTGACCTTCAGCCCCAGAACGTGGAGCCGGCCACAGGTCAGCCACCCCGGGAGAGCCTGCCAGGTGCCGGGCCCGGCGGGGACTCTTCTGTGGATGCGATTTACAAAGCAGTGGTGGATGCTGCGAGCAAGGGCATGCAGGTTGTCATCACCACCACAGTGAGCAGCACCACGCAGATGAGCCCCATTCCAGCTCTGAGTGCCATGAGTGCCTTTACCGCCTCGATCGGGGATCCCGTCAACCTCTCCCACGCCGTCAACGCCGTCATCCATGGCAGGAGACCGGCCGGCCAGGAACCAGAACACCGTGCCAGAAACGCCAGGGGGTCACGGGTGCGGAAGAACTCGGACCAGGGCAAGAGTACCCCTGAAGGTGGGGAGGCTTACGATTATTTCAAATCCCCGGGGCGCAACACCCCGAGGAAGCAGTGGGAGGTAGAGCCGGTCCCGGGAGTGGAGGGACACCCGTGGAAATGCGATGAGTTTTTAGAGTGCTCCAGCCATGAGAGGCTCGAGCGCACGGTGGAGAGATGTGCACACATTAATGGCAACCAGAGCCAGCCAAGCAGGGGCTACGGTGTGCTACTGAGCACCCCCAAGCACGACCTGGCCACAGAAGACCAGTCTCCCAGCTCCTCCACGAGCTTGGAGGGCTCGCTGGTCAAAGACTACATCCATTATAATGGAGACTTCAGTGCAGAGAGCATTAATGGGTGTGCGCCCAGCCCGTCAGACACTAAGAGTATCAGCAGCGAGGAAGATTTGAGGAACCCGGACTCTCCTTCGTCTAACGAGTTAATCCATTACCGGCCAAGGACGTTTAACGTAGGTGACTTGGTCTGGGGCCAGATCAAAGGTTTCCCTTCATGGCCTGGTAAACTTGTGAGTGAGGAGGAAGTGCACAATCCCACTGTCCAAAACACTGAGCAGGGGAAGGTGGAGCCCGAGAAACTGAAGACACTAACTGAAGATCTAGAAGCCTTCAACCGCGCCAGGAAGAGAAATAGAAAaaGTGGAAAGTTAAATAATCATTTAGAAGCTGCTATTCACGAGGCTATGAGTGAACTGGACAAAATCTCGGGCAGTGTTCACCAGATGCCACCAAGAGACAGACAGGTCAAGCCACCGAAGCCCAAGAGGAGGAAGATCTCTAGATAACATTGAATGTTTTCATCAGCAGTCCAGTACCCGTCAATGGAACTGTGTATATACATAGTCTTAATTGTTAACACCCCAAGGTGCTACAGTCAAACCGTGGTACAGTATTTTTGAAGACAAGGGACAATAAAGGTGCTGGATAAGCCAATCAGAAAACTGTATGATCATGGTTGCAATTTGTCTACAGCTTGCTGGAGAACTATTTTTTTctagaatatattaaaaaaaaaaaactgcatacaAGAAAATAGACAGTCCAAATATTTctgatacattttcaatatgtatatagataatGCAGAATTTCATGGTGATattcagagaagaaatgtaaatattgtacaatATTGTCATGTACAAGCGTAC
>TU159187
AGGAGCTCCATCTTTCTATCCCAACAAGCCCAGAGAGAGAACCAGAAGCAGCAGTTGATGGggaagctttttatttttatttttaaagggacAGAACCTTATTTTAACCAGCTCAAACCGGCCGTTTCACCCCCCTTAGCCTCCCAGGAACTCAACGGGGACGGGAAAAATGGGGGGAAAGGGTCGTGGGCCTGTAAATTAAGGAGAAAAATCCAGAAAGcccctcttttctctctgtctcctgctTCTTCTTAGCAACACAACCCTCTCCTCTGCCCGTGTCTCTGCTTTGGCCCTGGCTGGAGAGATTTCAGAGGAGAGACCTCAGTTCACATACAGAATATAAACTTCGTTGTTTTTTCGTCTCTCTCATCGTCATTTTATCTTATCTTGCGGTGGAATAATACAAAAGgtAACATCATGAGAAGACCACAATACAAGCCATCTTACATACTGGGAagttaaaagaagaaaacaaatcaaggaAGATGGGAAGCTCAAAGGGTGTAACGCTAGGACATCTTGGCTCGATCTCACTTCATTAGAAATGAAAGGTCTGAAAGCACAAGTCAGCAGCAGCTTCTGAAGAGTTGTTGCAgattgcaaaaatacaaactgcaacaaaaaaaagcttgcTGTTGAGACATTTACTCCCAAAGACATTCTTACCTGAACCATGTGTTTGTGGAGTGCGTAGCAACTGATTTCATCTATGTAGTTTGTGTATGTGACCCTCATCAGATCTGACTGCTCCCATTAAGGAAGACAATAATGGGACGTCACCTTGGTGTTTAGAAGGCCACAAAATGGAGGATTGCAAAGACTTGGGTCCAAAGTGAGCCCCCACTGACCACCTGATGTGCGGCTGTGTACAGTTTAAAAACCAAGCTGTACCGCATGGTCCTCTTTGGGAAGACCAAGATGACATGTAGTCTGAGGATACTGATGGACGTTTGATCTCTTCTGAGGTGTTGTGTGCAGAACCAGAACAATGAATGGAGGAAAGGAATGTGAAGGAGGGGACAAGGATGGGGGACCACCTGCTGCCCAGGTTCCCATAGGCTGGCAGCGCAAGGTGGACCCCAATGGAGTGGTTTACATAAGTCCCAGTGGCTCGGTGTTGGCCTGTCTGGAGCAGGTAAAAACCTACCTCCTGACAGATGGGACCTGCAAGTGTGGCCTGGAATGTCCTCTCATCCTTCCTAAGgaTTCAAAACAAGTTAACAACAGGTTGACCAATCCAGTATTAATAAACCTCTACAAGATACCAGTAAACGG

Function

NR:

description
PREDICTED: methyl-CpG-binding domain protein 5-like

GO: NA

KEGG:

id description
K23219 MBD5; methyl-CpG-binding domain protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000888 True 5316 mRNA 0.51 11 6689568 6715587
TU159187 False 1278 TUCP 0.46 4 6711958 6733817

Neighbor

gene id symbol gene type direction distance location
AMCG00000885 NA coding downstream 11462 6665302 ~ 6678106 (-)
AMCG00000887 LOC105022551,LOC103370269 coding downstream 27072 6624257 ~ 6662496 (-)
AMCG00000886 NA coding downstream 88091 6598852 ~ 6601477 (-)
AMCG00000883 NA coding downstream 132617 6551012 ~ 6556951 (-)
AMCG00000880 NA coding downstream 333181 6340352 ~ 6356387 (-)
AMCG00000889 acvr2a,LOC103040899,LOC105016248,LOC106586327 coding upstream 14510 6748327 ~ 6752464 (-)
AMCG00000898 NA coding upstream 638103 7371920 ~ 7454374 (-)
AMCG00000896 NA coding upstream 869440 7603257 ~ 7618404 (-)
AMCG00000897 spopl,LOC107658226 coding upstream 1485019 8218836 ~ 8232120 (-)
AMCG00000900 NA coding upstream 1556409 8290226 ~ 8296028 (-)
G126887 NA non-coding downstream 308320 6380963 ~ 6381248 (-)
G126873 NA non-coding downstream 353702 6334713 ~ 6335866 (-)
G126767 NA non-coding downstream 739674 5943386 ~ 5949894 (-)
G126698 NA non-coding downstream 1117435 5569944 ~ 5572133 (-)
G126665 NA non-coding downstream 1225516 5462567 ~ 5464052 (-)
G126977 NA non-coding upstream 386427 7120244 ~ 7125041 (-)
G127145 NA non-coding upstream 1904779 8638596 ~ 8639883 (-)
G127159 NA non-coding upstream 2030296 8764113 ~ 8764392 (-)
G127229 NA non-coding upstream 2333023 9066840 ~ 9083586 (-)
G127275 NA non-coding upstream 2624531 9358348 ~ 9360596 (-)
G126700 NA other downstream 1116541 5572705 ~ 5573027 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 1706917 4957138 ~ 4982651 (-)
G126427 NA other downstream 2053052 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 3033007 3553047 ~ 3656561 (-)
G126096 NA other downstream 3540316 3131714 ~ 3149252 (-)
G127039 LOC100136012,LOC107575789 other upstream 896098 7629915 ~ 7645722 (-)
G127292 NA other upstream 2685179 9418996 ~ 9419325 (-)
G127443 NA other upstream 3540870 10274687 ~ 10278211 (-)
AMCG00000960 NA other upstream 3963039 10696856 ~ 10700364 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other upstream 5963360 12697177 ~ 12703910 (-)

Expression


Co-expression Network