AMCG00000893


Basic Information

Item Value
gene id AMCG00000893
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 7860066 ~ 7942406 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000893
gaAGCTTTTCTTTACTGACTATGGGAATGTTGCCAAGGTTGAGAGATGCAACATGGACGGAACGAACAGAACAAGAATAGTGGATTATAAAACTGAACAGCCTACAGCAATCACCTTGGACTTGGTCAAAAAGCTGGTATACTGGGCAGATGTTTATTTGGACTATATTGAAGTGGTGGATTATAATGGAAAGAACAGGCACACCATTATTCAAGGGAACAATGTGGCATACGTCTATGGATTAACTGTCTTTGAAGATTATTTGTATGCAACATGTTCTGAGCCCACCAAAGGACATAAAGTggacattttaaagataaaccGCTTCAACAGCACAGATTTTCAAAGTATAGCCAGTATGGAAAATTCTAGAACATTATATGTCTACCACAAGCTTACTCAACCAACAGTCAGGAGTCATGCATGTGAAGAAGACCCATATGGGAAATCAGGAGGGTGTTCACACATCTGCCTACTTAGTGGCAGCTACAAATCAAGGACATGTCGTTGTAGGACTGGTTTCATCCTGGGAAGTGATGGGAAGTCATGCAAAAAACCCAAGAATGAGCTGTTCCTTTTTTATGGAAAGGGGCGACCAGGCATCATCCGAGGGATGGATATGAATTCCAAAGCGGGTGATGAACACATTATTCAGATAGAAAATCTTGTGAGTCCACGGGCTCTTGACTTCCATGCTgaatcaaattacatttactttgctgACACTACCAGCTTTTTAATTGGAAGACAGAAAATCGATGGGACTGGCCGAGAAACCATACTGAAAGATGACCTTGATAATGTGGAGGGGGTTTCAGTGGATTGGATTGGAAATAACTTGTACTGGACAAATGATGGATATAGGAAAACCATCAGCGTTGCCAGACTGGAGAAGGCATCTCAAACCCGAAAAACCATTTTAGAAGGAGATATGTCCCACCCAAGAGGAATCGTGGTAGACCCAGTAAATGGTTGGATGTACTGGACTGACTGGGAGGAAGATGAAGTCAATGACAGCATTGGTAGAATTGAGAAATCGTGGATGGATGGATCCACTCGACAGATATTCGTAACTTCAAACATGCTTTGGCCTAACGGCTTGACTCTTGATTATGGGACCAACACGATGTACTGGTGTGATGCCTACTATGATCACATTGAGAAAATTTTCCTCAATGGCACAGACAGAATGgttGTGTATAATGGAAAAGAACTGAACCATCCATTTGGCATTTCTCATTATCggaattacattttctggacTGATTATATGAATGGCTCTATTTTCCAACTGAACTTGTTGACCAGAAATGTTACCCTTATGAGGAGCGAAAGACCTCCACTATTTGGACTTCAGGTCTACGATGCTCAAATTCAGCAAGGTGACAATGCTTGCCGTGTAAACTATGGGGGCTGCAGCACTCTCTGCTTGGCTATTCCTGGGGGTAGAGTTTGTGCTTGTGCTGACAATCAACACCTGGAGAGAAATAATGTCACCTGTTCAAataatcaTAGTTGTCCTGCTGACCAATTTAAGTGCCTGAATAATCGTTGCATTCCTAAGAAGTGGCTTTGTGACGGAACCAATGACTGTGGGAATAACGAAGATGAGTCCAACTTTACATGTTCAGCTCAGACATGTCAGCCCAATCAATTCTCATGCCGTAATGGCCGTTGTATCCCTGTTTCCTGGCTCTGTGATCGGGACGATGATTGTGGGGACCACTCTGATGAGGCCTCTTCATGTGGTGACTGCAATAGTGAGGAGTTTGACTGTCACGCTGATGGCACCTGCATACCCGAGCGCTGGCGCTGTGACGGGGACAAGGACTGCGAGGATGGGAGTGATGAGCTCAACTGTGAAGGCACCAGAAGAATGTGTGACCCCAAATCAAAGTTCACCTGTAAAGTTTCAGgGAAGTGCATCAGCAAGAACTGGGTTTGTGATGGAGACAACGACTGTGAAGACCTTTCTGATGAGGAAAACTGTGAAAATGCTATCTGTAAGCCTCCAAAATACTCCTGTGGTAATGACACCTCCACATGCCTCTTGCCCGAGAGAATCTGCAATGGGAAGATTGACTGCTCTGATGAATCGGATGAGGGGCCTCTGTGtgATGAATGCTCTCTTGATAATGGTGGTTGCAGTCACCGGTGTGCAGTGGCTCCAGGGAAAGGAATTGTTTGTTCATGCCCAGCGGGACTTCATCTGAACTCAGACAACAAAACCTGTGAAATGGTGGATTACTGTACCAGACACCTCAAGTGCAGTCAAGTGTGTGAGCAGTACAAAACCACTGTCAAGTGTTCTTGCTATGATGGGTGGAAGCTCGGTCCTGATGGAGAGAACTGCTACAGCACAgATCCCTTTGAGGCTTTCATCATTTTTTCCATCCGTCATGAGATCAGACGGATAGATCTTCACAAGCGAGACTACAGCCTGCTGGTTCCAGGTTTAAGAAACACCATAGCTCTTGACTTCCATTTTAATCAGAGCTTACTTTACTGGACTGATGTTGTGGAAGATAAAATTTACAGAGGAAAGCTTTCTGATGCTGGAGGTGTTACAGGAATTGAAGTTGTTGTGCAACATGGTTTGGCAACTCCAGAAGGCTTGGCAGTGGACTGGATAGCTGGAAATTTTTACTGGATTGACAGTAATCTGGATCAGATTGAAGTGGCTAAACTGAATGACTGGGATGCCACGTTTCCCCGGATCGAAGCAGCGTCTATGAGCGGGATTGGGCGAcgcattgtttttaaagatatggAGATGGGAGCATGGCCCAATGGACTTACCTTAGACCACCTTGAAAAAAGGATAGTATGGACAGATGCAAGGTCTGATGCTATTTACTCAGCCTTATATGATGGAAGTGGTATTATAGAAATCCTAAAAGGACACGAGTACCTCTCCCACCCGTTCGCTGTTTCCCTATTTGGAGGTAATGTCTACTGGACAGACTGGAGGACAAACACCCTGGCAAAAGCTAACAAGTGGACTGGGCGCAATGTCACTGTGATCCAAAAAACAAGCGCTCAGCCTTTTGATTTGCAGATCTACCATCCAAGCAGACAGCCCCAAGCCTCGAATCCATGTAAAGCGAATAACGGAAGAGGTCCTTGCTCTCACTTGTGTCTGATCAATTACAACCGCACGGCTGCATGTGCTTGCCCACACCTCATGAAACTGGCTCCCGACAACAAATCCTGCTTTGCACTGAAGAAATTTCTTCTTTATGCTAGACGCTCCGAAATCCGTGGAGTTGATGTAGACAACCCATATCTGAACATCATAACAGCCTTCACTGTTCCTGACATTGATGATGTGATGGTGGTTGATTATGATGCTTTGGAGGGGAGGATTTATTGGACTGATGTAAAAACCCAAACAATTAAACGAGCTTTTGTTAATGGCACTGGCTTGGAGACTGTCATCTCTGGAGATATATTAAATGTCCGTGGGCTTGCTTTGGATTGGCTCTCGAGGAATATGTACTGGATCAGCTCGGAGAACGATGAGACTCAGATCAGTGTTGCTCGTTTGGACGGATCCCTCAAGACATCTGTCATTCACGGAATTGATAAACCTAAGTGTCTTGTGGTCCATCCGTCAAGGGGgaagATTTACTGGACTGATGGAAACACAATAAACCTAGCAAACATGGATGGAAGTAATAGTAAGATCTTGCACCAGAACCAGAAAGAACCTGTTGGTCTCTCAATAGATTATGCTgcaaacaagctttattggatCAGTTCAGGAAATGGAACTATTAACAGATGTAATCTGGACGGCAGTAATCTAGAGGTTATAGAGTCCATGaggaatgaattaataaaagcTACAGCACTGGCTGTTATGGGTGCCAAGTTATGGTGGGCAGATGAAAGTTCAGCTCAGATGGGTACAGTCAACAAAAGAGATGGAAGAAACCTGATTATATTACGAAACAAGACATCTGGAGTTGTTCATATGAAACTTTACGACAAGGAAGGACAAAAAGgcATTGGATCATTCCTTATGTACTCAATTCATGAAGGAATAAGAGGAATCTCTCTAGAGCCCAGTGACAATACAGAAGCATTGATGCCTATCACTGGTACCTTGTTTGCAGTTGGTGTGGATTTCCATGCAGaAAATGACACGGTCTATTGGACAGACATGGGTTTAAACCGAATCAGCAGAGCGAAGCGAGATCAAACATGGAAAGAAGATATCATCACCAATGGTGTGGGACGGGTCGAAGGAATTGCAGTTGACTGGATTGCTGGTAACATTTATTGGACTGACCATGGCTTTAATCTCATTGAGATCTCAAGACTCAATGGTTTATATCGCTCGGTTGTGATTTCCCAAGGGCTTGATCAACCCAGAGCCATTGCAGTGCATCCAGAGAAAGGGTACTTGTTCTGGACAGAATGGGGGCAGACCCCTTGCATTGGAAGAGCACGTCTGGACGGCTCAGAGCAGGTCGTGCTTATTAACTCTGGAATTGCCTGGCCTAACGGGATCTCGATTGACTACGAGgaaaataaattatactggTGTGATGCCCGTACAGACAAGATAGAAAGGATCAACCTTGAGAGCGGGGAGAGCCGAGAGATTGTGCTGTCAGGGAGCAATGTGGATATGTTTTCAGTGGCAGTCTTTGGGGCTTACATCTACTGGTCTGacagGGCACATGCCAACGGCTCCATCAGAAGAGGCTTCAAGAATGATGCTACAGATGCCTTGACCATGAGGAGTGGCCTCGGGATAAACCTGAAAGATGTGAAAGTCTTTAACAGAGCCCGGGAGAAAGGTACAAATCCCTGTGCCAAGAATAATGGTGGCTGTCAGCAGCTTTGCTTCTATCAAGGGAATGGGCGGAGGACTTGTGCTTGTGCTCATGGATTTCTCTCTGAGGGTGGATTCAATTGTCAGAAGTATGATGGCTACCTGCTGTACTCGGAGAGAACCATACTGAAGAGTATTCACCTTTCAGATGAGAGCAATTTAAATTCGCCAATAAAACCGTATGAGAACCCGGCCTATTTCAAGAATGTTATAGCTCTTGCCTTTGAATATAGGCAAAGGGCAAAAGGATCTAATCGCATCTTCTTCAGTGACGTCCATTTTGGGAATATTCAGGTTATTAATGATGACTGGACGGGAAGACGGATCATTGTTGAAAgtaagtgtgtatttcaatttttagatttaacattAGACTTCCTGCTAGAACTATTATCGTGGGATTTATTCTCACTCACAGACAGCTGTTTTGTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000893 True 5278 mRNA 0.44 30 7860066 7942406

Neighbor

gene id symbol gene type direction distance location
AMCG00000892 NA coding upstream 18554 7827672 ~ 7841512 (+)
AMCG00000891 NA coding upstream 513475 7343870 ~ 7346591 (+)
AMCG00000890 NA coding upstream 552410 7288283 ~ 7307656 (+)
AMCG00000884 orc4,LOC107577955 coding upstream 1116096 6733807 ~ 6743970 (+)
AMCG00000882 NA coding upstream 1318455 6532001 ~ 6541611 (+)
AMCG00000895 NA coding downstream 15443 7957849 ~ 7976053 (+)
AMCG00000894 LOC107746259,LOC107714450,LOC106586434 coding downstream 34753 7977159 ~ 8061207 (+)
AMCG00000906 NA coding downstream 170576 8112982 ~ 8163986 (+)
AMCG00000908 si:ch211-246m6.4,LOC107565497,LOC107656681,LOC107600970,LOC107751464,LOC107739350,LOC107653571,LOC107600989,LOC102786361 coding downstream 239971 8182377 ~ 8184025 (+)
AMCG00000907 NA coding downstream 632434 8574840 ~ 8575310 (+)
G127038 LOC100136012 non-coding upstream 214346 7629902 ~ 7645720 (+)
G127033 NA non-coding upstream 246210 7609617 ~ 7613856 (+)
G126982 NA non-coding upstream 605924 7231353 ~ 7254142 (+)
G126898 NA non-coding upstream 1111457 6685429 ~ 6748609 (+)
G126919 epc2,LOC106586324 non-coding upstream 1185839 6673612 ~ 6674227 (+)
G127091 NA non-coding downstream 346383 8288789 ~ 8289806 (+)
G127096 NA non-coding downstream 352112 8294518 ~ 8294873 (+)
G127144 NA non-coding downstream 696190 8638596 ~ 8639823 (+)
G127206 NA non-coding downstream 1138921 9081327 ~ 9082881 (+)
G127278 NA non-coding downstream 1420701 9363107 ~ 9377589 (+)
AMCG00000848 NA other upstream 2394085 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 6045909 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 6161493 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 6254035 1599696 ~ 1606031 (+)
G125561 NA other upstream 7456475 339640 ~ 403591 (+)
G127134 NA other downstream 674793 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 2157877 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 4057258 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 4346544 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 7207869 15150275 ~ 15184392 (+)

Expression


Co-expression Network