AMCG00000912 (LOC106586149)


Basic Information

Item Value
gene id AMCG00000912
gene name LOC106586149
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 8869964 ~ 8880928 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000912
ACTGTATAGCAGTTTCACATATAATGTACCACAGTGCTTTTCAGCTCTGTATTAAGACTTAAAATACTTTGTTGTTCAtcaaaaaaaaatttaaaagtgGATATTATGTTCTagtaaaataatgaacataTAGCTTAGTGTTCTGGCATCCAGTTTATTCCTCCTGAAGATTAGAAGCCCTAACTACATTTCTGTTAAAAGCTACTTACGTTTCTATGTTATTGCTGTTTAGGTTTACACTCGATATGGGAAATGCTACACCTTCAATGGGCAGAAGAGTTTACTTAAGAAGACCAAGCAAGGGGGGATGGGAAATGGACTGGAGATAATGCTTGACATACAGCAGGACGACTATCTGCCCATTTGGAAAGAGACAAaccaAACCTCACTAGAAGCTGGGTTACGTGTTCAAATACACAGCCAGGACGAACCACCTTACATTCATCAGCTTGGATTTGGCGTCTCTCCGGGATTTCAGACATTTGTTTCATGTCAGGAACAAAGGCTGACATACCTACCTCAGCCATGGGGAAACTGCAGACCAAACGGTGACACATTGATTCCTGGGTATGAAACGTACAGCATCAGTGCCTGTCGGCTGAAGTGCGAGGCAGAAGACGTGATAAAAAGGTGTCACTGCAGAATGGTGCACATGCCAGGGAATGCAAAAATCTGTACTCCCAATGATATAGAATGTGTCGAGGAGGCCTTGTCTGGTTTTCAGAAGAAGACCAATGATTCTTGTTCCTGTGAAACACCTTGCAATCTGACCCGCTATGGGAAGGAACTTTCTATGGTGAAAATCCCCAGCAAGGGGTCTGCTCGATACTTATCAAAAAAATTCAACAAGACAGAGGCATACATTAGAGATAATTTTCTTGTTCTGGATATTTTTTTTGAAGCCCTTAACTACGAAACAATAGAACAAAAGAAAGCATATGATGTGACAGGCTTATTGAGTGACATTGGAGGTCAAATGGGATTGTTTATTGGGGCCAGCATTCTTACCATTTTGGAAATACTTGACTACATCTATGAGGTGATGAAAGATAGGCTTCAGCGACTTATGAAGCCCCAGAAAGATGAAAACAAGAAGCAGTCTGGCAGCATAGCAACTCTGGGATTGGAAGATATGAAAGCCCAGGACACCTGCGAAATGATCAGAAGCCACCCAGAAGGAACGTACGCGGCCACAATCCTTCcgaaccaccaccaccatccgCACCACGGTGTCTTCGAAGATTTTGCCTGCTAGAGCTCCgggatatattttttctcaacaataaaatactgtttctgTGCTGGAAGTGGGCTTTACTACAGACCCTTGGACATAAGATATCAGTTCTACCTTTTTGCTGTCACCAGTGAAAGCTACAGCCAAAGTCTAACACCAAGCCTGTGCTGCTAACAGACTTACTCAACAGCACAGATTGGATTACACAACGTGGTCCTACTGAATACTTGTACCTTTTGTTCTCCTCTTCTGGAAAGCTATCTTCTCAGTTCCTTTACAGTTTCTATACTGTGGATTTTGCTATGGTCactattgaaatacaaaacaaggaCTGCATGTCACCTAGATAcaatttatactttttaaaataacctaaaaCGTAGATATGTCTGACTTCTTAtgtcacattttgattttgtatatgtatgtattctgaAATGCATACTATATTTAATGAAGGTTCTCatccaatttattttcatgttcaaTTGACATTTTCTCTGTCCCTTTaccagaagaaacaaaaccatttaaaacgAGTGGTGAAAATAAAGAAGGTTCTGCATTAGCTGCGGTCATTACAGTTCCCTGCGGAAGACATTCTGGCTGATTGAAATGATGACTACATTAATCAGCACttaatttatgaaaacaattaaatatttttttatttggtgtaagttaaatgtaatgaatatataatacatatgaaAGTAAATTAGAGGCttgatattgtttgtttattttctaatgtaatttataaataagggagaacaatatttttaaatgaaaagataaatgaTCTAAAGCAGTCACATTGAAGTCTtctattacatttgtttatgaatgttttaaaatgcttggTCTCACCAACAATTATGACATTACAgttcagtgaaaacaaaaccaaacaaatcaatGTAATATAGTTATCTATATACATAACCCTCGAATATATAGAACTGTTCCTGTCCTGCCTCATAGTAGCTGCTGTAGCTGTGGCCTCATTGCCCGGGGACCGGTTCCAAATCAGTCGCGTTCAAGCAGGATTTTCTTGTATCCAGGAAAACGACCACTTGTGCCATTGTAATTAGTGCATTTAGTGTGATTTCTCCTCATGCCATAACTTCACGCCCACCCTCGATGTCTCCGTCAGAGATCAGAGCTCAGAAATGGCAACGATCAAGTTCTTTCCCAAGTTGCGTGTGAAGTTCCACTGCTCCATGGTCCAACACATGATTCGCTACATCTCCCCAAATAAGACTATAACTGGTTGTCTGGAGCTGATATTTGTGTAGCCAATGcctcatttatttgaattgattCTAAACTTCAAAGTGCCTCTCATGGGGTCAGTATTAAACTCCTCTGTGTTGCCCCCTAAGTCTCTTCTGCTGTCACCAAGCCCAAGTATTTCAGAGAATGGCCTGCCACCATCATACCAATGTTtctgcacagaaataaatacatttctttctgacACACCAGAGATagatatgtaaaaatatgtcttctccttggattttcttttaaattatatcttGCTGTGCAGCGTACTTTACAGCAAGTAGTGATATTGAACAAATCAGaagtattaaatgtaaaatacttgaATTTTGCCAAAGTATACTCCTAAAcccagattaaaaacaaaacttgtatactaaagtagaaaaacagaaaatagaaaactacaatCGTGTACTCAGTGGCGGCTTAATGTGTTGTCAGatgcttttttcttctactcataaataTAACTGCTATAAAGTATaaatgtgtagttttctattagtgggtgggtcaactTTTTTGACGTTTTTATGGTCAGATTGTTCAAGTTTTCATTGGGCTTTTACATACAGGCCCATTTTTATGTACTCGTAtatgacaaaatacagaaagCTAGGTaggcagatttttatttttattttattttatttttggatgaaAAGAACCTATAGACTGATTTCAAACAATATTGTATCATCTTCCATATCACTTTATGAACCTTATATATTACACTGCCAAGctatcattttcatttgcatcatTGTTCTTGCAACACAGTTTATTGCTTCAGCAAATCCTGTTGTGTATTCATAGTAAACAGGAAatcattatattaatacataatcagtgtctgtatatgtaatcatatatatttaaattatatttccatgtatccttttctttttcaaatttaaatttacaaaactgttaatcaatataatttcattaaaacatatatcAATTCACTGTATGCACCATTTATAACTAACATTGCATGTGTACCGGTTATCCATGAACACTGCATGGctgtaacatttagaaatcATACACCTAAAAGCGACCTCTGTAGAGGGTCTTCTTCATATGCAAGCCTCTATTGGCACAATAAACTGGAAATGCTTATTTAAGTAATCTCATCACATGCATAATCATATATTCACAACAGGTGAAATGCACAGAATGATGAATATTTCATGGGAAAAGGGTTTGGGTACTATTTGActtctgctttattttgtaCTTCCTTCCTAACAGAATGAAAATGATTCTATGCTAACCAATCTCGCAATTAGACAGATGCTTTATAGaaccaatgtttttttgtttttgttttttagatccACCATCGGTAATTAATATCATACCTTCTAGAAAACTGTggctgaaaaatattttattaaggagTTGTATTGATTGTTGTGCATATAACTGTGTTTGATTTCAAAATCCTAAACCTTGAGTAGCAATCTGTATCTTATTTCTATACAACGGTACACCTGGTGTCAAAATTGTAGCCTTTTCCTGATTTTCTTGGTTGatcataaacatttataaatgtgtaaaatatctGTCTTAATTGTACactcctttttatttattttgaagaattgTTTGTAATCCAAACTTCTgataaattaaactgtacacattgtatttttttaccaaTTTGTGCATTTGGTTGTCTTtctatgtaatgtatttttgttttattttttacttgagTGTCACCATGTACAACAAAAGAGAGCAAGAAAGTCATATAGTAAGATGCCAGTGGGGCACACAGCATATCACTGTTAAGATTACAAGCAGAGGGTTAACGACAAATTATACGCTAAACTTTTAAGTTGGGAAAAGGAATGGACTTTACATTGCAAAGAAtgggaaatgcattttgtacagAAGTCTACTGTTGTGACTGTGAATTATTTAGTTTAAACacattgtataaatgtaataGCAAATTAAAccgattaaatattaaaactaaaa

Function

NR:

description
PREDICTED: acid-sensing ion channel 4-like isoform X1

GO:

id name namespace
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0015280 ligand-gated sodium channel activity molecular_function

KEGG:

id description
K04831 ASIC4, ACCN4, BNAC4; acid-sensing ion channel 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000912 True 4522 mRNA 0.36 10 8869964 8880928

Neighbor

gene id symbol gene type direction distance location
AMCG00000911 asic4 coding upstream 70343 8798586 ~ 8799621 (+)
AMCG00000913 gmppaa,LOC105902665,LOC107556449,LOC108266472 coding upstream 217917 8646653 ~ 8652047 (+)
AMCG00000910 NA coding upstream 224767 8641674 ~ 8645197 (+)
AMCG00000905 NA coding upstream 234084 8628581 ~ 8635880 (+)
AMCG00000904 mcm6,LOC107748580,LOC107705596,LOC107688862 coding upstream 253430 8609600 ~ 8616534 (+)
AMCG00000919 wnt6,LOC107672249,LOC107560470,LOC107663826,LOC107562106 coding downstream 37824 8918752 ~ 8929267 (+)
AMCG00000918 wnt10a,LOC107663825,LOC107562105,LOC107672309,LOC107560469 coding downstream 62914 8943842 ~ 8960784 (+)
AMCG00000924 NA coding downstream 151228 9032156 ~ 9033118 (+)
AMCG00000928 NA coding downstream 397266 9278194 ~ 9281019 (+)
AMCG00000927 NA coding downstream 413543 9294471 ~ 9358158 (+)
G127144 NA non-coding upstream 230141 8638596 ~ 8639823 (+)
G127096 NA non-coding upstream 575091 8294518 ~ 8294873 (+)
G127091 NA non-coding upstream 580158 8288789 ~ 8289806 (+)
G127038 LOC100136012 non-coding upstream 1224244 7629902 ~ 7645720 (+)
G127033 NA non-coding upstream 1256108 7609617 ~ 7613856 (+)
G127206 NA non-coding downstream 200399 9081327 ~ 9082881 (+)
G127278 NA non-coding downstream 482179 9363107 ~ 9377589 (+)
G127509 NA non-coding downstream 1562065 10442993 ~ 10444937 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding downstream 2790840 11671768 ~ 11742750 (+)
G127924 NA non-coding downstream 3213213 12094141 ~ 12096863 (+)
G127134 NA other upstream 249769 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 3403983 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 7055807 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 7171391 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 7263933 1599696 ~ 1606031 (+)
AMCG00000949 NA other downstream 1219355 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 3118736 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 3408022 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 6269347 15150275 ~ 15184392 (+)
G128823 NA other downstream 6528184 15409112 ~ 15420880 (+)

Expression


Co-expression Network