AMCG00000914 (chpf,LOC106581838)


Basic Information

Item Value
gene id AMCG00000914
gene name chpf,LOC106581838
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 8890226 ~ 8900361 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000914
ATGAGGTTTTCAATGTTCATTTCTCTGCTCAGGCCGATCGGCCCGGTCGTTATTGGCATCTCGCTGGGCTTTACCCTGAGTTTGCTCAGTGTGAACTGGGTCGAGGAGCCGTGCGGCGCCGCCGGAGAAGGGGACGATGGAGATGTGTTGACCGAGGAGGGGCAGCTGAAGGGGGCACGGAAGCCCAACTCTCTCCCCGCTGGCACCACGGAGAACGGGGATGCTTCGGAGGATTTTGAGCCCAAGATTGTGCCCTATAAGCAGGTAGAGCAGCAGACCACCCCCAAGAAGTTCTTCAGggcAAAGTACATCAGTACAGAACTTGGAATGCGGGAACGTCTTTTTGTGGGGGTTCTGACGTCCAAAAATACACTTAATACCCTAGCTGTCGCAGTCAACAGGACCATCAGCCACCACCTGGACAATGTTGTCTACTTCACAGGGATGCGCAACCGAAAACTCCCCCATGGAATGATGGTCGTGGCCCACGGCGATGAGAGACGCATCTGGAACATGTTCCAGACCATTAAATATGTTCTAGAGCATTACATCAACGAATACGACTGGTTTTACTTTGTCCAAGACGACACCTACACTGAGGCAGATCGCATCAAATCGTTCGTAGGGCACCTGAGCATTGATACAGATTTGTATATGGGCAGCCCAGAAGAGTTCAttggaggagagacagaggggagatACTGCTATGGTGGGTTTGGATACCTTCTATCCCGGACTTTGCTTTTGAAACTGCAGGCCTATTTGGAGAATTGCCGCAATGACATCCTCAGTGCCAGGCCGGATGAGTGGCTGGGCAGGTGCATCATTGATTATGCCAAAGTGAACTGTGTAGATGAGCATGAGGGACTCCGCTACCATCGCTTTGAAATGGGAAAAAACTCTGATCCCAGTAAGGAAGAAGATGCTCGCTTTAAGAACGCCTTCACTGTTCACCCCGTCTCTGATCCAGCACAGATGTACAGACTGCATAAACACTTCACTGAAATTGAACTTCAGAGGACCTATGCAGAGATTGAAACATTACAGgcagaaataaaaaatatcagtGAAGTTGCTGCGGAAGGCAATCGAAGCTCTCTGTGGCCTATTGGGATCAGTCCACCATTTGAACCAAAAACGCGTTTTGAAGTTCTCCGGTGGGATTATTTCACTGAAGATCAGGTCTACTCATGTAATGATGGGTCCCCAAAATGTGAGCTACACGGGATTGATAAAGCAGATGTCATTGATGTTATTGAAACTGCCATGGGAGAACTTAACAAGAAATATAAGCCAGTTCTCCATCTGAAGAAACAGCAGCTCGTCAATGGCTACAGGCGCTTCGATCCAACGCGGGGCATGGAGTACACGCTCGACCTTCAGCTGGAGGTTGTCAATCAGAAAGGAAGGAGCCGTTCCATTACTAAACGAGTTTACCTGGTTCGGCCTCTGAGTGAGATTGAGATCATACCCATGCCTTACGTCACAGAAGCTACCAGAGTTAACATAATCCTGCCTATAACTACCCATGACCGTGACTATGTCAACAACTTTCTGGAGGTATACGCAGCAAACTGCTTTGAGACGAGCGAGAATTCGGTTCTGTCTTTTTTGTTCATCTACGACCCTCTTGAGGCTCAGCAGGTCAGtcaaaatgacatttttgcGAATGTCAAAGCCAAGATCAATACCTATGAGCGCCAGTACCCTGCGACCAAAATCCCATGGATCAGTGTAAAGACTGAAGCTCCATCCCAGATGAAGATAATGGACATCATCTCGAAGAAACATCCCGTCGACACTCTGTTCTTTGTGGCCAACGTCAACACTAATGTCAATTCCGAGTTTCTCAACCGCTGTAGGATGAACACCATTAACAACTGGCAGGTATTTTTCCCCATCCATTTCCAAGACTTCAATCCTGATGTTGCATATCACAACCAGCCAATTCCAGCCAAAATTGACTTGATCAAAGATGCCGGCCACTTTGACCGAAGTGTCTTTGACGAGGCTTGCTTCTATAATTCCGACTACATGACCGCCAGAACCAAGATGTCGGCTGATGTTCAGGAGAATGAGGAGATCCTGGAAACCCTCGACATCTACGACATGTTCATAAAGTACTCTAACCTCCACGTGTTCCGAGCAGTGGAGCCTGCGTTGCACCAGAAGTATCGGCACAGGGTGTGTAACCCTCGACTAAGTGAGGAGATCTATCACAGGTGTGTTCAAAGCAACCTTGAGGGCCTTGGATCGCGGTCCCAGCTGGCCATGCTATTATTTGAGCAAGAGCAGGGGAACAGTACTTGA

Function

symbol description
chpf Enables N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity and glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Involved in chondroitin sulfate biosynthetic process. Predicted to be located in Golgi membrane.

NR:

description
PREDICTED: chondroitin sulfate synthase 2-like

GO: NA

KEGG:

id description
K00747 CHPF; chondroitin polymerizing factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000914 True 2310 mRNA 0.48 4 8890226 8900361

Neighbor

gene id symbol gene type direction distance location
AMCG00000917 NA coding downstream 226005 8662117 ~ 8664221 (-)
AMCG00000916 NA coding downstream 228595 8654002 ~ 8661631 (-)
AMCG00000909 NA coding downstream 264875 8617271 ~ 8625351 (-)
AMCG00000902 NA coding downstream 464101 8413443 ~ 8426125 (-)
AMCG00000901 NA coding downstream 545197 8327997 ~ 8345029 (-)
AMCG00000915 NA coding upstream 1874 8902235 ~ 8908000 (-)
AMCG00000923 cdk5r2a,LOC107748545,LOC107660098,LOC107566326,LOC107566799,LOC107705611 coding upstream 102788 9003149 ~ 9044874 (-)
AMCG00000922 NA coding upstream 145760 9046121 ~ 9048715 (-)
AMCG00000921 LOC107560461,LOC107672280 coding upstream 155383 9055744 ~ 9057523 (-)
AMCG00000920 NA coding upstream 172097 9072458 ~ 9076264 (-)
G127159 NA non-coding downstream 125834 8764113 ~ 8764392 (-)
G127145 NA non-coding downstream 250343 8638596 ~ 8639883 (-)
G126977 NA non-coding downstream 1765185 7120244 ~ 7125041 (-)
G126887 NA non-coding downstream 2508978 6380963 ~ 6381248 (-)
G126873 NA non-coding downstream 2554360 6334713 ~ 6335866 (-)
G127229 NA non-coding upstream 166479 9066840 ~ 9083586 (-)
G127275 NA non-coding upstream 457987 9358348 ~ 9360596 (-)
G127291 NA non-coding upstream 507832 9408193 ~ 9408469 (-)
G127300 NA non-coding upstream 555610 9455971 ~ 9468876 (-)
G127325 NA non-coding upstream 650289 9550650 ~ 9557148 (-)
G127039 LOC100136012,LOC107575789 other downstream 1244504 7629915 ~ 7645722 (-)
AMCG00000888 LOC102209482 other downstream 2156409 6689568 ~ 6733817 (-)
G126700 NA other downstream 3317199 5572705 ~ 5573027 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 3907575 4957138 ~ 4982651 (-)
G126427 NA other downstream 4253710 4636096 ~ 4636516 (-)
G127292 NA other upstream 518635 9418996 ~ 9419325 (-)
G127443 NA other upstream 1374326 10274687 ~ 10278211 (-)
AMCG00000960 NA other upstream 1796495 10696856 ~ 10700364 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other upstream 3796816 12697177 ~ 12703910 (-)
AMCG00001039 NA other upstream 3825333 12725694 ~ 12732601 (-)

Expression


Co-expression Network