AMCG00000923 (cdk5r2a,LOC107748545,LOC107660098,LOC107566326,LOC107566799,LOC107705611)


Basic Information

Item Value
gene id AMCG00000923
gene name cdk5r2a,LOC107748545,LOC107660098,LOC107566326,LOC107566799,LOC107705611
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 9003149 ~ 9044874 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000923
ATGGTCAACACTGCTGTCATGGTCCTGGAATACCTGAGTAAAGAAGTGGGGATCAGAATTGATCTGCAGCATCTTGGCACTCATTTTATCAATGACCTGCAGACACCGCTCCCAGAAGACCTCCTTGTTCGTCTCGACCAGGAATGGTTTCAGTGGGTAAGAGATCTCGTTGCCCATGTAGGAATAGGCCAGGTAGAGGCAGGTCAGAAAGGTGGCCTGGAGTTCATATTCACTGCTGATGTCGTCGCCCACAGCTTCTCTGCACAGCAAGTAGACAAAAACCAGGTTGGCGGGTGTGATGAAGCCCTGGTCCTGCCAACCCTGCAGGAGGAGCGACCGGTCCACATTTCGGAACCACAGGATGATCTCGTTGGGGCTCAGTTCCTTGAGTTTAAAGCATCTCCGGCACATGAACTCGCCCAGGCAGCGCAACAGCTCCCCGGTGGACGCCTGGACGATCACTCGTCTGGGGGAGATCAGAGATCTGTTGCTCGGTTGCTTCTGGACCGATATCAGCTGCTTCCCATTCTGCGATGCATTCTGGGGGTGTACGTGGTGTGTGAATGTATACATAGGCATCAGGAAGACACGATGTCCAACAAGTCTGACAACCTAAGTTTGGCAGgtggccgcaagtcttccatgaacaCCCATCGCCGTAGCTTCATCGACGAGTCAAAGTTGCCCAAACTATTTGGATCCCGCTTCGGGGGATGCCGGCCGACTTCTCTCAACCTCAGCACAAAGGCCTGCACTGTCTCTCCAGCCCACTGCCTATAA

Function

symbol description
cdk5r2a Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity. Acts upstream of or within embryonic retina morphogenesis in camera-type eye and retina layer formation. Predicted to be located in plasma membrane. Predicted to be part of protein kinase 5 complex. Orthologous to human CDK5R2 (cyclin dependent kinase 5 regulatory subunit 2).

NR:

description
PREDICTED: cyclin-dependent kinase 5 activator 1-like

GO:

id name namespace
GO:0010842 retina layer formation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0016533 protein kinase 5 complex cellular_component

KEGG:

id description
K19929 CDK5R2; cyclin-dependent kinase 5 activator 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000923 True 780 mRNA 0.54 5 9003149 9044874

Neighbor

gene id symbol gene type direction distance location
AMCG00000915 NA coding downstream 95149 8902235 ~ 8908000 (-)
AMCG00000914 chpf,LOC106581838 coding downstream 102788 8890226 ~ 8900361 (-)
AMCG00000917 NA coding downstream 338928 8662117 ~ 8664221 (-)
AMCG00000916 NA coding downstream 341518 8654002 ~ 8661631 (-)
AMCG00000909 NA coding downstream 377798 8617271 ~ 8625351 (-)
AMCG00000922 NA coding upstream 1247 9046121 ~ 9048715 (-)
AMCG00000921 LOC107560461,LOC107672280 coding upstream 10870 9055744 ~ 9057523 (-)
AMCG00000920 NA coding upstream 27584 9072458 ~ 9076264 (-)
AMCG00000926 NA coding upstream 38850 9083724 ~ 9108370 (-)
AMCG00000925 kalrn,LOC106581831,LOC106586158 coding upstream 92941 9137815 ~ 9196563 (-)
G127159 NA non-coding downstream 238757 8764113 ~ 8764392 (-)
G127145 NA non-coding downstream 363266 8638596 ~ 8639883 (-)
G126977 NA non-coding downstream 1878108 7120244 ~ 7125041 (-)
G126887 NA non-coding downstream 2621901 6380963 ~ 6381248 (-)
G126873 NA non-coding downstream 2667283 6334713 ~ 6335866 (-)
G127229 NA non-coding upstream 21966 9066840 ~ 9083586 (-)
G127275 NA non-coding upstream 313474 9358348 ~ 9360596 (-)
G127291 NA non-coding upstream 363319 9408193 ~ 9408469 (-)
G127300 NA non-coding upstream 411097 9455971 ~ 9468876 (-)
G127325 NA non-coding upstream 505776 9550650 ~ 9557148 (-)
G127039 LOC100136012,LOC107575789 other downstream 1357427 7629915 ~ 7645722 (-)
AMCG00000888 LOC102209482 other downstream 2269332 6689568 ~ 6733817 (-)
G126700 NA other downstream 3430122 5572705 ~ 5573027 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 4020498 4957138 ~ 4982651 (-)
G126427 NA other downstream 4366633 4636096 ~ 4636516 (-)
G127292 NA other upstream 374122 9418996 ~ 9419325 (-)
G127443 NA other upstream 1229813 10274687 ~ 10278211 (-)
AMCG00000960 NA other upstream 1651982 10696856 ~ 10700364 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other upstream 3652303 12697177 ~ 12703910 (-)
AMCG00001039 NA other upstream 3680820 12725694 ~ 12732601 (-)

Expression


Co-expression Network