AMCG00000938


Basic Information

Item Value
gene id AMCG00000938
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 9938207 ~ 9945452 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000938
GTTTCAATTTCAGAATTTCCTGTTAATCCCCCTTCTTTCAGCTTGTGAcagaaataGTGTAACTtcgggaagaaaaaagaaaaggtgtcCTGCGCGGCGCAGAGGTGAGGCCGCTTGGCAGCTGCGGGCCGCTGAGCTCAGGTAGCCCATCAGGAAGTGCGGGACCCGGGCAGCGAAAGCGCCGCGTTTCACGCAAAACCGTCACTTCAATGAGCTGCGAGTGCCGGGAAAACATGCCAGAGCCCGGCGTGGAGCTGCAGCACACACAGCGTCGCACTGCGGCCAAGGTAAACAGTCTTGAGAAGTGGGAGATGTGTATAAAGTCAAGTGCAAACATCATATTgtaaaggtatatatatattaatatcaaCTTTTCAAGCCAGTTTCAGATGAGGATGTGTGCACAACCGTTCATCAGAGCTGCTCTGCTGGAATAGCAATGCCACGCAGGCAGCGCGGAGGAGGACACTTATGAATGCTAAACCATCAGCTGGGATAagatttgattttactttttaaaaatgaggaTCCGTAAATACTTCCGAGGCAGTGGACGGGTCCTGGCGTTTGTTTTCATCGCGTCTGTCATCTGGTTACTTTTCGACATGGCAGCGCTGAGGGTTTCATTCAGCGAAGTGAACCCTCAGCTCTTAAAGGAGCTCATAGTGAAAGAAAGGGAGGCTCTGAAACACCAGGCCACGACCAGGACACCTTTCCTGAAGAAAAGAGGGCCCAAACTTCCCCAACAGAAAAGTGACATGCAGCGGCTGAATGAAGTGCAGTTCGCCTTCAAAGTCGACGAGCAGGCGGGGGGGAGAGCAGCAGATGCCGCACAGGTGAAACAGGATCTGCAACTCGGGCCGGATAAGAAAGCAGCCCGAGAAAATAAAGACTCTGAGCTCAAACGTGCACACAAAAACGCACAAAGTGATGCAAAACTACATGCTAAAGTGCAAGTTAAGTGGCCAAAGGACTTGATCACGAACACTTCCATCCGTGCAGCTCCTATAGCTGtgaacaaacaggaaaacattGCTAAGCAAGGCATGCACGTAAGAAAAGAGGCTATTTCAGACACACAAAAGGGTATACATGTCCCAAGCAAAGCATCTGTCAAAATACCTAAGGAATTGCCCAAAGCTCCACCTGGTGCGAAGGAAGAAGAACTGCACTTAACCCCCAAACCTGGGAAAAAGTCTCCTCACACGACTGGGGCTAGTAAACTAGTAGTAGTGGATAAGTCCAAGAACAATGTGTTAGACACAGGTGCCACATCTGAGATCAAAGCTGATGAAAAGGCACATCCGAAAGAAAGTCAAGCAGGGGATGACAACTCTTTACAGGTGAAAGTTAAAGAGTTTCCAAAAATGGACAAATCCAAAGACCAACAAAGTAATATTTCTATCCCTGTGAACAAGAAGGAGGTCTCAAAAGAAAGAGACGGTGGTCCTGGCATGGGGAAGATCTCTGTATTGAACGTGAAGGAAGCAGGGGGAGAGGTGAAGGTGAACTCCACAGTGCGGGTGCGGGATTCAGGGACGCACAAAGTGTTGCACATAGATGTAACCCAACACCCAAGAGATGCCAAAGTCATCGGGCAGTTTGGACAACCTGCGGAGGTAGCCAAGGACAAAGAAGTGCAGGTGATGAAAATGTGGAATGAAGGATATTTCAATGTGTACCTCAGTGAGCAGATTCCCTTGGACAGGGCCATTCCCGATACCAGACCTCAAGGATGTTCTGAAATGTTGGTGCACAATGACCTTCCGACTACTAGCGTGATCTTCTGTTTTGTGGATGAGGTGTGGTCCACGTTGCTCAGATCTGTACACAGTGTGCTTAATCGCTCTCCTCCTCACCTGCTTAAGGAGATCATCTTAGTGGATGACTTCAGTACCAAAGATTACCTCAAGGAGAAGTTAGACGAGTATATGTCACAGTTTCCAAAGGTCCGCATCGTCCGCCTGAAGGAGAGACAGGGCCTAATCCGGGCCAGGCTTGCTGGAGCAGCTGTTGCTACAGGTGAAGTTTTAACCTTTCTTGACTCGCATATTGAGTGCAACGTGGGCTGGTTGGAGCCACTCCTGGAGAGAGTGTATTTGGACAGAAGAAAAGTTGCAATTCCAGTAATTGAAGTAATTAGCGATAAGGATTTGAGttaCATGTTAGTTGACAACTTTCAAAGAGGCATTTTCAAATGGCCCCTGGTGTTTGGGTGGAAGCCTATCCCAGAAGAAATCATCAAGAGAGATAAAATTAAAGATTCAGACCCTTTAAGATGTCCCGTTATGGCTGGAGGGCTTTTCTCAATAGATAAAAAGTACTTCTATGAACTTGGGACGTATGACCCTGGTCTTGATGTGTGGGGTGGAGAAAACATGGAGATCTCCTTTAAGaTTTGGATGTGTGGAGGAGAAATGGAGATAATCCCTTGCTCACGAGTCGGCCACATCTTCAGGAATGAAAACCCCTATAAGTTTcccaaagacagacagaaaactgTGGAGAGGAATCTGGTCCGTGTGGCTGAGGTGTGGTTGGACGAGTACAAGGACCTGTTCTATGGGCATGGCTATCACCATCTCCTGAACAAGAACAATGTTGAAGTGGGAGACCTCTCTGAGCAGATCCAGCTCCGCAAAAATCTCAAATGTAAAAGCTTCAAATGGTACCTGGAAAATATCTACCCAGACTTGGAGGCGCCATTAGTGAAAGCTGAGGGTCTGATTTTCAATCTGGGTGCGAGAAAATGCCTTGTTGTTGAGAAGGAGAAGCTTTCATTCGAAGTCTGTGATCTCAGCAGACAGAACCAGCATTTTAATCACACTTGGTTACGACACGTCAGACAACAAAATGTCTGTCTCGCACTGAAGAATGCAAAAGATGATGTTGGTCCGGTGGAGTGTGACCGTGCAGACCCACAGCTGCGCTGGCTGCATAAATCACATGTTTTTAATCCCCCTTTGCTGGAGCATCTCATTCTGGAGCATCTTCCCCAGCCTGCGTGTTTAGAAGCTGACCGTAAGGGAGTAGCTGTGCTTCTGAGGAAGTGTGACCCTGGCAGTCCATTTCAAAAGTGGCAGTTCACAAATTACTATGCCGAATAGTCTTAAACACAAACTGTTCACTTGGGAACATTGAGATGAATGGAGTTCTTCTTCATGTGGATGCTTTACAGTGTAACGTTTCATATGAAGTGACTAAagatacgtttttttttttagttgtttcaGATATTTATGTGAagaattatgtttgtttgtctacATTTTGAATTGTCTTGGCTGACAATATAACCTGCATACAACAACAGCGAGAGTCCTGTTTGAGGGAATCCGTGTTGCTTTCCAAACATCGTTCTAGATCATTTGCCGACTCTTCAGTAGCCTGCTATAGCCACCTACGGACTGCCTTTGACTTATAAAGCATTAAAAGTTGGACTGTCCCTGCTTAATTGAAATAAGCTGGTGACGGGGGTTTTTGTTGAATATCATAAGTAGTGCTTGTTGATTATTATGTTGGGGTGggatttttcctttaaaaatataatatgtctGTCATAGGGATGGGTAGCAAATCAATtccttttctatattttgtttttatcataacTGTAAGGGTGGTTAAGGGTGTAACACTAAAAGCAAGCCATGCAAATAActctaaatacaaaaacacaaaaaatgtacacGATGGACATATTATTTTGAATCTATGgacatgtttttcttctgtaccATAAGTGCCATAATAATGCATTGAAAAAGCTGAGCAGtatgtgttcatattttaactATGTTTgcaaaaactgtgaaaatgtgttaCAATGTAATATTCTTTTTAGTTCTAGACAACTACATGCAAAGGgaggttatttttgttttgttagtaatACTTTAagtatttgtctttcttttcctgtaAGAACTAAATGTGTATCCTATATCCAACTAGCATTATATCTTGAATATTAagttacagttacatttttcaattgtgATCAATTTGTGTTCCTCCCTTCGACCACTTGGTGTCACTTTGTATCCatgaaaacatttcctttctCTCAAAGCCTTTCCAAAGATTGAACTTAAACTATACTGGTTACAGCATGTGGAAATCAGGTAACACTTACCAAATACTGCCTTAGTGAATTTCTCCTGtggtgcatttgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000938 True 4189 mRNA 0.44 11 9938207 9945452

Neighbor

gene id symbol gene type direction distance location
AMCG00000939 gpd2,LOC105019720,LOC106574870,LOC107660071,LOC106575774 coding upstream 70609 9833360 ~ 9867598 (+)
AMCG00000936 kcnj3,LOC107671326,LOC107566749,LOC107567067,LOC107657376 coding upstream 321307 9616316 ~ 9616900 (+)
AMCG00000934 kcnj3 coding upstream 360506 9576061 ~ 9577701 (+)
AMCG00000935 NA coding upstream 384556 9518281 ~ 9553651 (+)
AMCG00000929 NA coding upstream 482106 9454157 ~ 9456101 (+)
AMCG00000948 NA coding downstream 78836 10024288 ~ 10035708 (+)
AMCG00000946 NA coding downstream 91222 10036674 ~ 10041048 (+)
AMCG00000947 tanc1 coding downstream 256205 10201657 ~ 10278211 (+)
AMCG00000952 march7,LOC107584818 coding downstream 436321 10381773 ~ 10391810 (+)
AMCG00000959 NA coding downstream 615104 10560556 ~ 10570905 (+)
G127278 NA non-coding upstream 560618 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 855326 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 1298384 8638596 ~ 8639823 (+)
G127096 NA non-coding upstream 1643334 8294518 ~ 8294873 (+)
G127091 NA non-coding upstream 1648401 8288789 ~ 8289806 (+)
G127509 NA non-coding downstream 497541 10442993 ~ 10444937 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding downstream 1726316 11671768 ~ 11742750 (+)
G127924 NA non-coding downstream 2148689 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 2594629 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 2660587 12606039 ~ 12655172 (+)
G127134 NA other upstream 1318012 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 4472226 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 8124050 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 8239634 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 8332176 1599696 ~ 1606031 (+)
AMCG00000949 NA other downstream 154831 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 2054212 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 2343498 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 5204823 15150275 ~ 15184392 (+)
G128823 NA other downstream 5463660 15409112 ~ 15420880 (+)

Expression


Co-expression Network