AMCG00000939 (gpd2,LOC105019720,LOC106574870,LOC107660071,LOC106575774)


Basic Information

Item Value
gene id AMCG00000939
gene name gpd2,LOC105019720,LOC106574870,LOC107660071,LOC106575774
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 9833360 ~ 9867598 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000939
AATAGTGTCAATCACAGCTCTCTTACTTCCTGGTTCAGCTTCCAGATATGTCTTGCTAAATTGATGAAGGGAGGCTACAGTTGCATCTGTTTTCAGACACTACATAAAGCACACCAGGAAAAGCAGCACCGCTGAAAGAAACAACTCCTATTTTGACACTCCAAACCTTCCTTGTCAAAGgggACACTATGGCATTCCGAAAGGCAGCGAAGGGTACAGTACTTATTGGAGGGGGTGCCCTTGCTGCAATTTATGGCATCTCCCAGCTCTCTGAATATAAGAAAAGAAAGACCCGACTTTCGTATGTAGAAGCAGCAGAACCAATCAGAATACACTATAACGATGAGCTACCTCCAAGAGTAACTCAACTGATGACCCTTCAGACAACACAGGAATTTGATGTGTTGATTGTTGGGGGAGGAGCTACTGGCTCTGGGTGTGCCTTAGATGCAGTTACTCGAAATCTTAAAACTGCCCTGGTGGAGCGAAATGATTTCTCATCAGGCACGAGCAGCAGGAGTACCAAACTTATTCACGGAGGAGTAAGATATCTACAGAAAGCCATTATGAAATTAGATTATGAACAGTATATGATGGTTAAAGAAGCACTTCATGAACGCTCTAACCTTCTGGAAATTGCACCGCATTTGTCTGCGCCTTTACCTATTATGCTTCCTGTTTACAAGTGGTGGCAGATGCCATACTTTTGGGCTGGCATCAAGATGTACGACCTGGTGGCGGGCACGCAGTGTTTGAAGAGCAGCTATGTCCTCAGCAAGACAAAGGCTCTTGAACTTTTCCCCATGCTGAAGAAAGACAAACTCGTGGGTGCCATTGTCTATTTTGATGGACAACACAATGATGCACGAATGAACCTCGCCATCGCCCTTACTGCTGCCAGGTATGGCGCTGCCATAGCCAATTACACTGAAGTAGTGCGCCTACTAAAGAAGACAGATCCTGCAAGTGGAAAGGAGCGAGTCTGTGGAGCACGATGCAGAGATGTTATAACAGGGCAGGAATTTGATGTCAGAGCCAAATGTGTTATCAATGCCACGGGACCTTTCACAGACACGCTACGGAAAATGGATGATCAGAAAAACTCTAACATCTGTCAGCCCAGCGCTGGTGTACATATCGTCATTCCTGGCTATTACAGCCCTGACAACATGGGGCTCCTGGACCCCGCCACCAGTGATGGACGGGTTATCTTTTTCCTGCCGTGGGAGAAAATGACTATTGCTGGGACCACCGACACTCCCACGGATGTCACTGCACACCCAATACCGACCGAAGAGGACATCAATTTCATCCTGACTGAAGTCCGCAACTACTTGAGTCCGGATGTGGAAGTGAGAAGAGGAGATGTCTTGGCAGCCTGGAGTGGTATACGTCCCCTGGTCACTGACCCAAACTCCAAGGACACGCAGTCCATTTGCCGCAATCACATTGTTAATATAAGCGAGAGTGGACTTGTTACTATAGCAGGTGGAAAATGGACAACCTATCGTTCAATGGCCGAAGAGACATTAGATGCAGCAGTCGCGTCTCACAACCTGAATGCTGGGCCTAGCAAAACTGTAGGCCTGATGTTGGAAGGAGCCAAGGACTGGACCCCTACCATGTATATCCGTCTGGTTCAGGATTATGGTCTCGAGATGGAGGTTGCTCAGCATCTTGCTGCTACGTACGGAGGACGGGCTTTTGACGTGGCCAAAATGGCAAAGGTTACTGGAAAGCGGTGGCCCATCCTCGGGAAACGTCTGGTATCAGAATTCCCTTATATTGAAAGCGagGTTCAATATGCAATCAAAGAGTACGCCTGCACTGCCATCGATGTCATCGCACGCCGCACACGACTGGGGTTCCTGAACGTGCAAGCTGCTGATGAAGCACTTCCAAGAATTGTAGAAATAATGGGCAAGCACTTAAAGTGGAGCGAGCAGAAGAAAAAGGAAGAACTTGAAACGGCAAAACAGTTCCTGTACTACGAAATGGGCTACAAGTCGCGGTCAGAGCAGCTAACAGACACCTCTGAAATAAGTCTTCAACCATCAGAAGTTGACAGGTACAAAAAGAGATTTCACAAGTTTGATAAAGAAAAGAAGGGATTTATTACCACAGTTGATGTTCAGAGGGTCTTGGAGAGTATTAGTGTCCAGATTGACGAAAACGCACTCCATGAAATCCTTAATGAGGTGGACCTGAACAAGAACGGACAGGTTGAACTTAATGAATTCTTGCAGctTATGAGTGCGATCCAGAAAGGTCATGTGTCTAGTAGCAGGCTTGCCATTCTGATGAAAACCGCAGAGGAGAACCTGGATCAGAGGGAGCCCGTGTCCGTCGACCGCAGCGGTGGAGGAGTGTAAACCTCCGAGTGCCAAATGTTGCCCCGAGAAACACTGAATGCaaatctgctgctgctggtggctTGACTTGAAAGTTACTGAGAGGCTTCTCAAGTCTATAACTGCAATGAATGATCATTAGTATTcttcttaatattatttattcatcgTTATCTTTGCCTtcatatagtttgttttatgtgGCATTTCTCTTCTTTTGTAAGTGTTTACACAGTGCATTTTTTATTgagaacatttcattttgtttgaaacTATTGGCAGTTTGTTCAGTGATCTCCTGCTTCtcagtattgttgtttttgtctgtaatAATTATACTGATACTTTTCAGACATCTGGCTACTGTTAAATTTTTGCACAAATTCTtgaatgtgttgtgttgttacTGCTGTGTTATCCAGCATTGTGTTGTACTTCAGATTATCATGAAATGGCGTTTGCAGTACAAATCAATGTTAAAATTGTTTGTATTCAGTATTTAGCTGTCTAATTAAATGTTTGGTGTTGTAAACCTTACTACTGTGCCATTTTATACCTATTATTATATTCGCGATGTGATAggaaacatttttatatcagattttttttaatatgatccatttttaaaggtattttcaGTAAGTTCTGTAGTTTACAAGGAACATTAAATTGCTTAAATtgttccatttttaattaactgccattttaatctttatattttatttttaaaaagtgacttTTAAACGCAAGacatgtatttgatttaatgcaCTTTGATGTAAAGTGAGCTACAAATCAACAATAAGCATGCTTAAATATTCTGAATGCTTATGGGTGTATGTGATTGGTTCTtggaagtatttttttgtaatatgattttattatgcTGAATGGGATTAAGTATTGTATTTGAGCCTGGGTTTTAATTTCTCTATCTGTCTATGCACTTGgtgtttttattactattaatttattacttgTGGTATGCTGGGTGAGCCGCTTGCATTTATAGAGTAATAAgggaatgtatttaatgtgcCTTGCTTTCAAACCCAGTATGAATTGAGAGCATGAATCAATAGAACTGATTAAACTATACACTCACTGGCTTTTAGCATGCTTAATTTCACAGTctctataaataatacaattattgtttcatgcagacttttaaaataaagatttcatACATCTGCT

Function

symbol description
gpd2 Predicted to enable calcium ion binding activity and glycerol-3-phosphate dehydrogenase (quinone) activity. Predicted to act upstream of or within glycerol-3-phosphate metabolic process. Predicted to be part of glycerol-3-phosphate dehydrogenase complex. Predicted to be active in mitochondrion. Is expressed in several structures, including adaxial cell; ectoderm; musculature system; pectoral fin bud; and peripheral olfactory organ. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human GPD2 (glycerol-3-phosphate dehydrogenase 2).

NR:

description
PREDICTED: glycerol-3-phosphate dehydrogenase, mitochondrial-like isoform X2

GO:

id name namespace
GO:0006072 glycerol-3-phosphate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009331 glycerol-3-phosphate dehydrogenase complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity molecular_function

KEGG:

id description
K00111 glpA, glpD; glycerol-3-phosphate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000939 True 3548 mRNA 0.42 18 9833360 9867598

Neighbor

gene id symbol gene type direction distance location
AMCG00000936 kcnj3,LOC107671326,LOC107566749,LOC107567067,LOC107657376 coding upstream 216460 9616316 ~ 9616900 (+)
AMCG00000934 kcnj3 coding upstream 255659 9576061 ~ 9577701 (+)
AMCG00000935 NA coding upstream 279709 9518281 ~ 9553651 (+)
AMCG00000929 NA coding upstream 377259 9454157 ~ 9456101 (+)
AMCG00000930 fmnl2,LOC107745270,LOC106581828 coding upstream 402304 9395618 ~ 9431056 (+)
AMCG00000938 NA coding downstream 70609 9938207 ~ 9945452 (+)
AMCG00000948 NA coding downstream 156690 10024288 ~ 10035708 (+)
AMCG00000946 NA coding downstream 169076 10036674 ~ 10041048 (+)
AMCG00000947 tanc1 coding downstream 334059 10201657 ~ 10278211 (+)
AMCG00000952 march7,LOC107584818 coding downstream 514175 10381773 ~ 10391810 (+)
G127278 NA non-coding upstream 455771 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 750479 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 1193537 8638596 ~ 8639823 (+)
G127096 NA non-coding upstream 1538487 8294518 ~ 8294873 (+)
G127091 NA non-coding upstream 1543554 8288789 ~ 8289806 (+)
G127509 NA non-coding downstream 575395 10442993 ~ 10444937 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding downstream 1804170 11671768 ~ 11742750 (+)
G127924 NA non-coding downstream 2226543 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 2672483 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 2738441 12606039 ~ 12655172 (+)
G127134 NA other upstream 1213165 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 4367379 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 8019203 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 8134787 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 8227329 1599696 ~ 1606031 (+)
AMCG00000949 NA other downstream 232685 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 2132066 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 2421352 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 5282677 15150275 ~ 15184392 (+)
G128823 NA other downstream 5541514 15409112 ~ 15420880 (+)

Expression


Co-expression Network