AMCG00000948


Basic Information

Item Value
gene id AMCG00000948
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 10024288 ~ 10035708 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000948
ATGTACGGGCATGTGCAGCAGAGCatcaCACTGGAATCGATCACCATCACACACGCGTCCAACGCCACCCCGGAAGTGATAATAGCGCGGCGGCGTGTGTGCGCCTGCGCGGGTTCCGTCGCCATGGTTACCAGAAACGGCAGCTTCCTCCCAGAACCCAACAGTAAACACAAAGCTGGAGGCAGCGCACCACCCTACGCCGGCGAGATTCCTGGCCTGGGATACGGCGTTGACATGGGTCCTGAGAAAATAACCCACGGACGTCGGACCGGTGTTTTTGAGTCAGATTCTGACTATGTGAAACTGGCTAAACGAGGAGGACAAAAGGGTTTATTATGGCACGAGGACACAAATGTAGACTCAAAAACCaattcaaattacaaacctCCAGACTGGTTTTCAGCAGAATCTGAGTCTCAGGAACAGCAAAGCACATCTAAAAGAACAATTCCTGATTACATGACTTCCGAAGAATTCCAGAAAAGTCCAACTAAGGGAACTTTTCAGCCCCTAGATGCTCCCTTTGGGACTGATAATAAAACAACTTGGGAGCGGGAGCCTGATAGTTTTACATCTGGTAAAAATAAGATGGAATTGAACCATCCCGTGGATCAGATGGAGGACCTGACTTTGACCAGTCCAAATTCCCAGGAAGGGGGCAAGTTTAAGAAAACGTCTTTTGACAAAAAACAGCCACCAGTTAGCATGCAGAAACTGCTCAGTTTTGGCTATGCAGATGATTGGCATGCAgtaaataaaggagaaaaagaTGATGAAGGATCAAGTATAGAGTCAGAACATCCGAGCGCCATCACTCCAGACCAAGACCTCTCTTAGTGTGATATTGAGGATGTTCAGTCAAACCAGTCACATGTTATTAACAgactgtttgtatttctttgctGCAACATAACcgttccattttttattttgtattttctctttttgttacAATTGTACATGTAGTTAATCACTTCATCGTTTTATTGATTTCTCTATATAGTGTAActtaaaaacaactgcaaaatcAAAAGACACCTTGGTCCATAGAgcgtatttatttttatttatagtgcAACCATCGGGAATTGAGTGACAGTAGTGGAGGTTACAACCCTCTTTGTTGTTGCCTTCCTGAAGAGGTTTGGTTATAATtagtaatttattatatttttaatttgatctgtACTGTGGATATATCTGTCAAATAAAAtggtgtgatttgttttctggttAACAAATGAATTCCAGTTTACAATCTCTTCCCCTGTATTCTGCCACCATTGAATGTGTTTAAAACTTTAAGATATCTGGAGTCACTACATTGAAACAACGTTTAGAAATTGAGAAGACAAACCACAACTCATGCCACTTTCTAGGCAGCTATTTATACAGGTCATTGCCCCTTCCTCTGCCTCCCCATGAAGGCCCTGGCATCTGCCCCTATGCCCAAGGGGAGTCCTGGTCACCTTGGTGGTCTTGGTGGCCAGGCTCTTCTCCACAAGGCAGGACAGTTAAGAGCCTCAACTACTACTTAGGAGTAAACCCATGAGCATTATGTGTTCAGGGTTTTCGATCTCCTGAACTACATTGAGTTTAAATTTATTTCCATGGCTGTTCCTTTAAGAAAAATGCAGCTAGACCTAACTAACTTTCAATTACCATTCATCCAGCCAGACAGCTAGTAGAAGGTACAAGTTTTAGAAGGAAGTTGAAAggatgtttttggttttgatcACTGCTACATCTCTATATCACACTTCTAGCAAAATATCCCATTTTCCTAAATCATTTTCACTGCAATACAAACAGGTTACCTTATTCAGGACTGGTTTGAATTTATCATGAAGGGCTTGCAAAGTATACATATTACTGCTGCACTCAACCTATATTTGTGAAATTGTCAATTTTGTGATGCTGGCCTTTACCGCtggggttttattttaagaaaggcCAGTAAGATTTAAGTAGGCATTCAGAACAAGCTCCTCCCTATTGGGCAAAGTAACTGCAGCTGATCACAGCTTTATATAGCATTTGAGCTGAGCGCAAAACTGCTTCTGCATTTGCAAGATGAAGCTAATTTTACAATGTACTATCAATAACATGCTCTGTACACTGCCTGGAGATGTTTCAGCATATGAGAATAAATCTGATTGTTGTGAGCTTATCACTTATTTCTGTGAATTTTCTGTACCACAATATGACCATTTCAAGGACCTTTTCCTGGACTAAAATCATTCAGATTCCCCTTGATACTGCTCTCATTATCGGTGTTCTGCTTATTAAAGGTTTAATACTGTCCAGCAGATGTTGCAAGACTGTATGATGTCTTCCATTAATGTTTTTACCTTTTGAACTGCGaagtttgcattttttgtttgttagaatATCTTGAAGAAAATGTGACAATAAACTTGCATGTGcatgaaaattgtgttttgtatttgatttcgCATGAAATATTGTAATCTCCCAATATACTTCATGTGAATGGTATGTTGTTGATGTATTATTTCCTGATGAAATAAACTAAcctttgtgtgtatatatatgtataactcATTCTGAGTTAAACATTCATTTGTTAAacttaagaaaatgtaagtagatcAAAAGATAATTGAAGAAGTCGAAAGCTGTCTatcttggacaacaaatcaacGAGATATCATCTTAAGGAAGAAATGAAAATGGGATAgagtacatttgaaagaaaaggcagactattgaaaggaaattacCCATCGACTATTTGATCAATTCAAACTACCAGTACTcccttatggctctgaaaccaggtcacaaaatgcaaacaatatacagaaactggaaatgactcaagcatggaaagatgcttgtttggaataacaaggacacagaaaaacaaataaatggatcagagaacaaagaaaagtatgtgacattgaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000948 True 2933 mRNA 0.39 9 10024288 10035708

Neighbor

gene id symbol gene type direction distance location
AMCG00000938 NA coding upstream 78836 9938207 ~ 9945452 (+)
AMCG00000939 gpd2,LOC105019720,LOC106574870,LOC107660071,LOC106575774 coding upstream 156690 9833360 ~ 9867598 (+)
AMCG00000936 kcnj3,LOC107671326,LOC107566749,LOC107567067,LOC107657376 coding upstream 407388 9616316 ~ 9616900 (+)
AMCG00000934 kcnj3 coding upstream 446587 9576061 ~ 9577701 (+)
AMCG00000935 NA coding upstream 470637 9518281 ~ 9553651 (+)
AMCG00000946 NA coding downstream 966 10036674 ~ 10041048 (+)
AMCG00000947 tanc1 coding downstream 165949 10201657 ~ 10278211 (+)
AMCG00000952 march7,LOC107584818 coding downstream 346065 10381773 ~ 10391810 (+)
AMCG00000959 NA coding downstream 524848 10560556 ~ 10570905 (+)
AMCG00000957 psmd14,psde,LOC107563735 coding downstream 544092 10579800 ~ 10603207 (+)
G127278 NA non-coding upstream 646699 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 941407 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 1384465 8638596 ~ 8639823 (+)
G127096 NA non-coding upstream 1729415 8294518 ~ 8294873 (+)
G127091 NA non-coding upstream 1734482 8288789 ~ 8289806 (+)
G127509 NA non-coding downstream 407285 10442993 ~ 10444937 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding downstream 1636060 11671768 ~ 11742750 (+)
G127924 NA non-coding downstream 2058433 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 2504373 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 2570331 12606039 ~ 12655172 (+)
G127134 NA other upstream 1404093 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 4558307 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 8210131 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 8325715 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 8418257 1599696 ~ 1606031 (+)
AMCG00000949 NA other downstream 64575 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 1963956 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 2253242 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 5114567 15150275 ~ 15184392 (+)
G128823 NA other downstream 5373404 15409112 ~ 15420880 (+)

Expression


Co-expression Network