AMCG00000967 (slc4a10)


Basic Information

Item Value
gene id AMCG00000967
gene name slc4a10
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 10649612 ~ 10680286 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000967
agaaaTGATGAGGAGGCTGTTGTGGACAGAGGTGGAACTCGTTCCATCTTGAAAACTCACTTCGAAAAGGAAGAACTAGAAGGCCACCGGACATTGTACATTGGTGTGCACGTACCACTTGGAGGAAGAAAGAGCCACAGAAGACACAGGCATCGTGGACATAAGCACAGGAAGAGAGACCGAGAGCGGGACTCTGGGGTAGAGGATGGGAGAGAGTCTCCCACGTATGatACTCCCTCCCAGCGAGTTCAGTTCATCCTGGGCACCGAGGATGACGATGAGGAGCACATTCCTCATGACCTCTTCACTGAACTTGATGAAATCTGCATGCGTGATGGAGAGGAACCTGAATGGAGAGAGACAGCTAGGTGGCTGAAGTTTGAGGAGGACGTAGAAGATGGAGGGGAGCGCTGGAGTAAGCCCTATGTTGCTACTCTGTCACTCCACAGTCTGTTTGAACTTAGAAGCTGCATCCTCAATGGCATTGTGCTTCTGGACATGAGAGCCAACTCACTGGACGAGATTGCAGacATGATAATGGACCAGCAGGAGCAGTCGGGGCAGCTGGCGGAAGAGGTGCGCAGGAAGTTGCGAGAGGCTCTCCTGAAGCAGCACCACCACCAGAACCAGAAGAAGCTCAGCAACAGGATTCCCATTGTGCGCTCATTTGCCGACATTGGAAAAAAACAGTCTGAGCCCCATTCCATGGATAAAAATGTGCCTCCCAATGCAGAGGGGAAGAGTGATGTCAGCCGAGAAAACAGCACTGTTGACTTTAGTAAGgTAGATTTACACTTTATGAAAAAGATTCCTCCTGGGGCCGAAGCTTCTAATATTTTAGTCGGTGAACTGGACTTCCTGGATCGGCCTGTGGTGGCGTTTGTGCGCCTGTCTCCTGCAGTCCTGCTCTCAGGCTTGACTGAAATTTTTCATGATGTGGCTTACAAAGCAAAAGATCGTAATGACCTGATAGCTGGAATTGATGAATTTCTTGACCAAGTGACAGTCCTGCCACCTGGAGAGTGGGACCCATCGATCAGAATAGAGCCACCAAAAAATGTACCCTCTCAGGAGAAACGTAAGCTGCCCGCTGTGCCAAACGGCACAGCTGCTCTCGGTGAAAATGAGGAACATGGTGGCCACGGAGGACCTGAGCTGCAGCGAACTGGCAGGTTCTTTGGTGGGTTGGTGCTGGATATCAAAAGAAAAGCCCCACATTACTTGTCTGACTACACTGATGCAATCAGTCTGCAGTGCTTGGCATCCttcctttttctgtattgtgcgTGCATGTCACCCGTGATCACGTTTGGAGGCCTGCTAGGAGAGGCAACTGAAGGGCGCATAAGTGCAATTGAATCCCTGTTTGGAGCCTCGATGACAGGAATAGCCTATTCATTGTTCGCAGGACAGCCTCTCACAATACTGGGTAGCACAGGGCCTGTTCTTGtgtttgaaaaaatactgtacaaattCTGCAAGGAAAATGGATTATCCTACCTCTCGTTAAGAACATGCATAGGACTCTGGACAGCATTTCTGTGTATTGTCCTCGTTGCAACCGATGCAAGTTCCCTTGTGTGCTACATTACCCGTTTCACCGAGGAGGCTTTTGCTTCCcttatctgtattatttttatttatgaggCCTTGGAGAAGTTAATTCACCTTGGTGAAACATACCCATTCAACATGAACAATAATCTGGATAAACTCACTCAATATACgtgtgtttgtgtggagcCCCCAAATCCAAGCAATGCAACTCTGTTGTATTGGGATAAAAACAATATCACTGCCTCTGAAATCCAGTGGCAGTCTTTAGATGTGCATGACTGTATTCAAAGTCGCGGAGAGTTCATGGGAACGGCTTGTGGGCCCCATGGCCCGTATGTACCAGATGTTGTGTTCTGGTCCGTTGTCCTCTTCTTTTCCACCGTAATTATGTCCGCCTTTCTGAAAGAATTCAAGACCAGCCGCTATTTTCCTACTAAGGTTCGGGCAATTATTAGTGACTTTGCTGTTTTCATTACCATTCTCACTATGGTTTTGATTGATTTCGCCTTAGGAATACCATCTCCAAAACTTCAAGTTCCAAATGAATTTAAGCCCACCAGAGATGACCGAGGCTGGCTGATAAATCCGCTGGGTCCCAATCCATGGTGGACCACCATCGTGACTGTGTTCCCTGCTTTGCTCTGCACTATTCTCATCTTTATGGACCAGCAGATCACAGCGGTCATCATCAACCGAAAGGAACACAAACTGAAGAAAGGATGTGGATACCACCTTGATCTGTTCATGGTTGGTGTCATGCTGGGAGTGTGCTCCATCATGGGATTGCCTTGGTTTGTAGCTGCCACTGTTCTCTCCATATCACATGTGAACAGCCTCAAACTGGAATCTGAATGCTCCGCTCCAGGGGAGCAGCCGAAATTCCTCGGGATCAGGGAGCAGAGGTTCACAGGGCTGATGATCTTTTTACTGATGGGTTGCTCTGTGTTTATGACCTCCATTCTGAAGTTTATTCCAATGCCTGTGCTGTATGGAGTTTTCCTTTACATGGGAGGTTCTTCACTGAAAGGGATACAGTTCTTTGATCGAATTAGACTTTTTGGGATGCCAGCTAAGCACCAACCAGACTTCATCTACCTACGCCATGTCCCTCTAAGGAAGGTGCACCTCTTTACCATCGTCCAGCTGAGCTGTCTCGTCCTGCTCTGGATAATAAAGACTTCAAATTTTGCCATCGTATTCCCAATGATGGTATTGGCCTTGGTGTTCATTCGGAAGTTGCTCGACTTTATATTCACAAAGAGGGAGCTAAGTTGGTTGGATGACTTAATGCCAGAAAGTAAGAAGAAGAAATTAGAGGATGCTCAACAAGAGGAAGAACAAAGCATGCTGGCAGAAGAAGAGGGAATAGTACACCTGCCACTAGAAGGAAATTACAAGGATGATCCATCTACGGTAAACATTTCTGATGAAATGAACAAGACATCTGTTTGGAAGACCCTCTCCATGAATACGGAAAACTCCAAAAAGGATCTCAGTGTTCCCTCCAAA

Function

symbol description
slc4a10 Enables sodium:bicarbonate symporter activity. Predicted to be involved in several processes, including bicarbonate transport; regulation of short-term neuronal synaptic plasticity; and visual perception. Predicted to act upstream of or within several processes, including brain development; locomotory exploration behavior; and regulation of cellular pH. Predicted to be located in several cellular components, including apical plasma membrane; axon terminus; and neuronal cell body. Predicted to be active in basolateral plasma membrane.

NR:

description
PREDICTED: sodium-driven chloride bicarbonate exchanger isoform X3

GO: NA

KEGG:

id description
K13861 SLC4A10, NCBE; solute carrier family 4 (sodium bicarbonate transporter), member 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000967 True 3066 mRNA 0.47 22 10649612 10680286

Neighbor

gene id symbol gene type direction distance location
AMCG00000958 tbr1,tbr1b,LOC105022444,LOC106586185 coding upstream 38203 10605668 ~ 10611409 (+)
AMCG00000957 psmd14,psde,LOC107563735 coding upstream 46405 10579800 ~ 10603207 (+)
AMCG00000959 NA coding upstream 78707 10560556 ~ 10570905 (+)
AMCG00000952 march7,LOC107584818 coding upstream 257802 10381773 ~ 10391810 (+)
AMCG00000947 tanc1 coding upstream 371401 10201657 ~ 10278211 (+)
AMCG00000966 gran,gca,LOC108242177,LOC106575298 coding downstream 72800 10753086 ~ 10759497 (+)
AMCG00000975 NA coding downstream 531475 11211761 ~ 11213039 (+)
AMCG00000974 scn1lab,LOC107706643,LOC107581364,LOC107705566,LOC107677574 coding downstream 532985 11213271 ~ 11242383 (+)
AMCG00000976 NA coding downstream 562312 11242598 ~ 11253223 (+)
AMCG00000973 NA coding downstream 579114 11259400 ~ 11283681 (+)
G127509 NA non-coding upstream 204675 10442993 ~ 10444937 (+)
G127278 NA non-coding upstream 1272023 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 1566731 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 2009789 8638596 ~ 8639823 (+)
G127096 NA non-coding upstream 2354739 8294518 ~ 8294873 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding downstream 991482 11671768 ~ 11742750 (+)
G127924 NA non-coding downstream 1413855 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 1859795 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 1925753 12606039 ~ 12655172 (+)
G128107 ola1,LOC107660044 non-coding downstream 1958699 12638985 ~ 12676174 (+)
AMCG00000949 NA other upstream 495425 10100283 ~ 10154187 (+)
G127134 NA other upstream 2029417 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 5183631 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 8835455 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 8951039 1668845 ~ 1698573 (+)
AMCG00001002 myo3b other downstream 1319378 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 1608664 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 4469989 15150275 ~ 15184392 (+)
G128823 NA other downstream 4728826 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 4780246 15460532 ~ 15463853 (+)

Expression


Co-expression Network