AMCG00000973


Basic Information

Item Value
gene id AMCG00000973
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11259400 ~ 11283681 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000973
TGGAGGCCTGTCGCTCCCAACTCCATTCCTGCATCAGATCCATTACTTCTTCCTGGACACCTCACGGAAATGGCGGCCCGTTGTTAAGTAACCCAGACGCTGTGGACCCAGTATCAAGATGGCGAAAATCAAGTAAAATGTAGCGAATTCAGCCTCGAAACACAACGTAACGAATTGTGAACCGTGTGCAGGTCATTTAGTGTCAGCCGAGCCGCTGCAATGGCAGGGACAGCAGACGACGAGTTAATGCTGgcTTTAATCAACTATTACTGCCAGGAAAAGTATTTCAATCATGTGCAGAATGCTGCAAACGAGGCTCTGAAAAAGAACAGCAGCGATCCCATCTTCATGTTTTTTCATGCCTATGGAGTATTAATGGAAGACAGAATCCAGGAAGCCATTCGAGAGTTCGAAGCTATTAAAGAAAGACGCGAGGTGTCTCTGTGCACGTTGATGGCTCTTATTTATGCCCATAAGAAGAGTCAAAATCCAGATCGAGATGCCATTCAGGAGCTGGATGCCAAGCTGAAGGAGCATCGCAAGAGTGCCACTCAGAAAGGGCTGTATTTTGCAGGACTGTTCCTCTGGCATCTGGGGCGCAATGAAAAAGCCAGAGAATACACTGACAGGATGATAAAGATCTCTAATGGTGCAAAAGAAggGCTGATCTTGAAGGGATGGATAGACGTTACATCTAATAAAGATGCCAGTGTTAAAAAGGCGGGGAAATATTTTGATGAAGCTTTAAAGGAAGGAGCAGATGTTTTTGCTTTGATGGGGAAGGCACAATACTTCGAGCTGCGACAAAACTACTCTGGAGCTTTAGAAACGATCAATCAAATCATTGTCAGCTTCCCTGAATTCCTGCCTgcttttataaagaaaatgaagctACTACTAACCTTGCAAGACTGGGAGCAGACTGTTGAAGCAGCTCAGAGGCTTTTACAAAAGGACAAAACTAACATTGAAGCTCTTCGGATGCTGGCTCTCCATTCATTGTGCAGAGAAGGAGATTTGAATGAGtCTTTCAACCAGCTCACCAACCTCTTTGCCACCCTGGACCGTTATGAGCCACACAATCCTGATCTTTTCTATCAGATGTCATTGGCTTTTACACGCGTGtGTGGAAGAAACGAGAAGATCCTTGAAAAGACACACACTTTGGTGGAGCGAGCATTTTCCATGGCATCAGGTGATGCAGAGCGAGCCACTGAGCTGGGCTATCAGCTCGTTCTGCAGGGGAAAATAAAGGAGGCGATGAAGTGGTACAGAACAGCAATGACACTGGATGAGACCAGCATCTCTGCTCTAACTGGAATGATTAGGTGCCAGCTTATTGAGGGACACCTGGAAGATGCAGAGCAACAGCTTGAATTTCTTACTGAAATCCAGCAAACTATTGGGAAATCTGGGGAGTTGTCTTACCTGCGAGCAGTTTTAGCGATTAAGAAGTGCAAGCCACAGGAGGAGGTCATTAACCTGCTCAATGATGCTATGGACACACATTTCTCTGCTCTGCAAGGACTGCCACTTGGGGTTGAATACTTTGAGAAGCTCAACCCGGACTTCCTGCTTGAGATCATTAAGGAATACATTGCTCTCTGTCCAACACAGCCACCTTCTCAAGGCCAGCCTGCCTCTCCCCAGCTGAAGCACTGCGCCTCAGTACTGGAGACAGTGGTCAAGACTGTGCCTGGGCTCATCCAAGCTGTTTATTTAATGGCTAAAGTAAAATTCCAAGCAGGCGACATCAAAGCGGCTCAGAGCAGCCTGCAACACTGTTTAGAACAGAATCCATCCCATGCTGATGCTCATCTCTTAATGGCCCAGATTTATCTTTTACAAGGAAATTTGAAACTGTCTTCACAATCTCTGGAGCTCTGCCTAAGCTATAATTTTGAGATACGAGAGCATCCTCTATACCACTTGATTAAAGCACAGActcaaaagaaaacaggagagcTGCAAGAAGCCATTCACACCCTGCAGATAGCAATGAGTTTACAAGGAATGAAAAGGACTGGGAGTTCTTCAAAATCCAAAAGTAAAAGAATCGAGATCAGCTCTACTGACTGTGTCTCCCATGAAGCAGCTAAAGTGATGCAGGATGCAATCAATGAATTCTCAGGGACCCCTGAAGAATTGCGTGTCACTATTGCAAACGCAGACCTGGCTCTTCTCCGAGGGGACACAGAACTGGCCCTTAACATGCTTCGCAACATCACACCAGAGCAGCCGTACTATATTCAAGCCAAGGAAAAAATGGCTGACATTTATCTAAACCACAGAAAGGAAAAGCGCCTCTATGCCAGTTGTTACAGagacTTGGTGGAGAAACTGCCTAGCTCCCATACCTATCTCTTGTTGGGTGATGCCTATATGAACATCCAGGAGCCAGAAAAAGCGATTGAAATATATGAACAAGCATTAATGAAAAACCCAAAAGATGGTGCCCTGGCCAGCAAGATTGGTAAAGCCCTTGTGAAAACTCATAACTATGCTAAGGCAATAAATTATTATGAAGCAGCACTCAAGAGCGGTCAGCAGAATTTCCTTCGTTACGACTTGGCAGAGCTTTTGCTTAAACTCAGGCAGTATGAGAAATCGGAGAGGGTTTTACAGCAGGCACTGAACCATGAGCCTGTCACTGACCTCGCAGCACTAAGTGAAGATGGTCGCTATCTAGTTCTTTTAGCTAAGATACAAAACAGGATGGAAAACAATGAGCAGGTGATACTATCCTTACAGAGAAAACAACTAGCAGCAGAGATCTGCGCTGAGATTGCCAAGCATTACACTTGTCAAAGGGACTATGAGAAAGCCATCAAATTCTACAAAGAGGCACTTGTTTATTGTGAGAGCGATAACAAGGTGATGTTGGAGCTTGCACGGCTATACCTTTCTCAAGATGATGTAGAGGCATGCCAGCATCAGTGTGCAGTTCTCCTTAAAACTGACCAAGATAATGAAGCTGCAACTATGATGATGGCAGATCTGATGTTTAGGAAGCAAGATTATGAGCAAGCCGTTTTCCACTTCCAACAACTTCTAGAGCGAAAACCAGACAACTACCCCACACTGTCACGTTTAATTGACTTGCTAAGGAGAGCAGGAAAGTTGGAAGAAGTTCCCAGATTTCTAGAGATGGCTGAAAAGCATTCTTCAAGAGCCAAGCTAGAACCTGGATTTAACTACTGCAAAGGAATTTATCAGTGGTACACAGGGGAACCAAATGATGGATTACGTCATTTTAACAAAGCTAGGAAGGACAACGAGTGGGGtcaaaatgcaatttacaacATGATTGAAATTTGCTTGAATCCCGACAATGACACGATGGGGGGTGAAGTGTTTGAAAACTTAGATGGAGACATTGGCAACTCTACAGAAAAACAGGAATCTGAACAACTGGCTGTGAGAACAGCAGAGAAACTTCTAAAAGAACTAAAACCACAGACCCCCGATGGGCATGTTCAGTTACGAATCATGGAGAACTACTGCCTCATGGCAACCAAGCAAAAAGCAAATGTAGAAAAAGCACTGAACGTTTTTACTGAGATTGCAAACAGTGAGAAAGATCATGTCCCTGCATTGCTTGGTATGGCAACAGCTTATATGATTCTCAAACAGACCCCAAGAGCACGGAACCAGCTCAAACGCATTGCTAAAATGAACTGGAATGCCATTGATGCCGATGAGTTTGAGAAAAGCTGGCTTCTCTTAGCTGATATTTATATTCAGTCAGGAAAATATGACATGGCAGGGTACAAACTTGCATTCAATTACTTGAAAGCAAAAAGATATGTTGATGCCATTGATATATGCCATAAGGTTTTGGATGCACACCCCAATTATCCAAAGATGAGGAAAGACATTCTGGACAAAGCCCGAGCAGCCCTAAGATCTTagtgtgattttgtgtgtgtgtttttaataaggGATCATATAAACctatcaataaatataaatatatattttgcttatttCTCAGGATCTCCAAATTATTGAGTATGACACAATGGTACACAACTCTGATTATTCACTTTCCATTCAATATAATATCACGCAAGTGCTGTAGATAGTTTGTTGTTTATAGTAGACAATGAGATATTTAAGTGTGTAATTACGATATTGTTCACTATATTTTATGTGGGAAATAAAATTACTTCTTGGAGTGTGTAAGggtgtatttttatatgaaagtgtttttgttttgtttttaactaagAAGTCTTTTGTACGAAACTTCatgtaaataaaattgtgaTAATTGTGTCTTGGTTCTTCTACCATGTGACCTGTTTTTTCTCCTATACTGTGAATTTGAAATTAGTGATATAAAAcccatttgtttgcttttccattttgtgtCCAACAAATACATGTTATGAGCTTATGTGGAAATAAAATTGGACATTTGTCTGCAGTATTCACTATTCATGATTTACAACtgtggtttatttaaaatatatttttcacatgaaGGTGGTTTTGTTCACTTTGCTTGTTAAATCATGCTTAACTGAGGAAAATACTCATGGGCGCAGATTggtc

Function

GO: NA

KEGG:

id description
K19673 TTC21B, IFT139B; tetratricopeptide repeat protein 21B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000973 True 4557 mRNA 0.42 28 11259400 11283681

Neighbor

gene id symbol gene type direction distance location
AMCG00000976 NA coding upstream 6177 11242598 ~ 11253223 (+)
AMCG00000974 scn1lab,LOC107706643,LOC107581364,LOC107705566,LOC107677574 coding upstream 17017 11213271 ~ 11242383 (+)
AMCG00000975 NA coding upstream 46361 11211761 ~ 11213039 (+)
AMCG00000966 gran,gca,LOC108242177,LOC106575298 coding upstream 499903 10753086 ~ 10759497 (+)
AMCG00000967 slc4a10 coding upstream 579114 10649612 ~ 10680286 (+)
AMCG00000972 NA coding downstream 2814 11286495 ~ 11303124 (+)
AMCG00000986 NA coding downstream 95302 11378983 ~ 11393332 (+)
AMCG00000980 NA coding downstream 113206 11396887 ~ 11410209 (+)
AMCG00000989 b3galt1,LOC106586201,LOC106581793,LOC106575305 coding downstream 225067 11508748 ~ 11509983 (+)
AMCG00000981 cers6 coding downstream 275060 11558741 ~ 11597550 (+)
G127509 NA non-coding upstream 814463 10442993 ~ 10444937 (+)
G127278 NA non-coding upstream 1881811 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 2176519 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 2619577 8638596 ~ 8639823 (+)
G127096 NA non-coding upstream 2964527 8294518 ~ 8294873 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding downstream 388087 11671768 ~ 11742750 (+)
G127924 NA non-coding downstream 810460 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 1256400 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 1322358 12606039 ~ 12655172 (+)
G128107 ola1,LOC107660044 non-coding downstream 1355304 12638985 ~ 12676174 (+)
AMCG00000949 NA other upstream 1105213 10100283 ~ 10154187 (+)
G127134 NA other upstream 2639205 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 5793419 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 9445243 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 9560827 1668845 ~ 1698573 (+)
AMCG00001002 myo3b other downstream 715983 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 1005269 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 3866594 15150275 ~ 15184392 (+)
G128823 NA other downstream 4125431 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 4176851 15460532 ~ 15463853 (+)

Expression


Co-expression Network