AMCG00000983


Basic Information

Item Value
gene id AMCG00000983
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11668570 ~ 11675059 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000983
GCCGGACAGTGTCCCAGTGCAAATGTGCAGTGCAGTTTGACACTGGAATAGGCCAACTAGTATAAGTAACCCAAGCTCCTGTTGAAAGGTATAAAAGAAGACAAAGACCATGGTATCTGAAGTGGAGAATGGAACATATAGTTTCACTGAGctcTTCATGTCAAACCCAGTGACCACAtgcattttggccagtgttttggCCTTAATTGCTCTCTGGTACATAAAGGATTCCCTGAAGATCGATCACATTGACCAGAAGTATGTCTTAGTAACAGGCTGTGACACCGGCTTTGGGAATCTCTTGTGTAAGCAGCTTCACCACAGAGGGTTCTGCGTCATAGCTGCATGTCTGTCAGAGAAAGGGGCTGACGATTTGAAGGCTGCCACCTCCCCCAGACTGAAGACAGTCCTGCTCAACGTTACTGACAGCACCAGCATTGAGAACGCGTTTCAGTTTGTGCAGGCTGAGACTGGGGAACGAGGTCTCTGGGGTTTGGTAAACAATGCTGGGAGAGCCACGCCCATTGGCCCCACAGATTGGATGCAAATGGAAGATTATAAAAAGGTCCTTGATGTGAATCTGATGGGCTTGATTGAGGTGACCCTGAAGTTCCTTCCACTTCTGAAGAAAGCCAGAGGCCGGGTGGTGAACGTGGCCAGTATCATGGGCAGGCTGTCTATGATAGGGGGAGGATACTGCTTATCCAAGTGGGGTGTGGAGTCCTTCTCCGACAGCTTGagGAGGGACATGCACCATTTCGGTGTCAAAGTGAGTATAATAGAGCCCGGCTTCTTCAAGACCGCAGTGACCAGTCTGGAGACTATTGAGGCAGACCTGAAGAGACTCTGGAATTGCCTGACACCTGAGGTCAGGGACTCCTATGGAGCACAATATTTTGAGGAATATCTGAAAGCTCAGCGTTTCTCAATGAATATCTTATGCAGTTCTGACATCTCGAAAGTGACTAACTGTATGGAGCACACCTTGACCACACGCCACCCCAGGACACGCTATGGAGTCGGGTGGGACGCCAAGTTCTTTTGGCTTCCTTTGTCCTATGCACCTACATGCATCTCAGACTTCATTTTGAGTACACTATTGCCAGTTCCTTCAGGCAACAAAATTGTCCAAACAAATCAGGTAGCTATTTAAGAAACACaagcaaaattaatttaaaaaacttaTTCACTAGTTTTAAATTCTGTTTGAGTCTAACATGTCAACCTCTTGACTTCATCTGGATCTTGATCTTGGGAATGCTGTCTAAATTAACCAATATagcatcaaattaaaataaagctccCAATCTCAAGTTCACAAAGTGCCATATTTTGCTGAGGTGTTTTCcctgtgaagaagaaaataaagttgtgGGGATGGGATATGAGACTCTCCTAATTACAGAGGATTATCTGAGTTTTCCAATGACAGGAGAGAGAAGGCACTCTGAATGAAGCAAAACAGCAGCAGATAAAGATGAATGTGAATTAGGATTAAGAAAGTAAAAGTAatcgattaaaaataaatctactcAGAACAGGAACAATAATCTGTTAgagaactaaaacaaacattttcagactGTGATTAATAGTAAATTAGACTCTTTAGGGTGAAGCCTAAATTAGATTTATACAGCATCACTTTTGTTTATATGGTATATAATTCTACATATATGTTAAATGTGGtcaatattattgtatttttaatcatgtaaag

Function

GO: NA

KEGG:

id description
K11154 RDH16; retinol dehydrogenase 16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000983 True 1720 mRNA 0.43 6 11668570 11675059

Neighbor

gene id symbol gene type direction distance location
AMCG00000985 NA coding upstream 5924 11656653 ~ 11662646 (+)
AMCG00000984 NA coding upstream 45934 11620258 ~ 11622636 (+)
AMCG00000982 NA coding upstream 56916 11600268 ~ 11611654 (+)
AMCG00000981 cers6 coding upstream 71020 11558741 ~ 11597550 (+)
AMCG00000989 b3galt1,LOC106586201,LOC106581793,LOC106575305 coding upstream 158587 11508748 ~ 11509983 (+)
AMCG00000990 NA coding downstream 62410 11737469 ~ 11740984 (+)
AMCG00000996 LOC106581781,LOC105022468 coding downstream 71100 11746159 ~ 11784742 (+)
AMCG00000997 NA coding downstream 111483 11786542 ~ 11795450 (+)
AMCG00000993 ppig,LOC106586208 coding downstream 127796 11802855 ~ 11811289 (+)
AMCG00001001 NA coding downstream 140544 11815603 ~ 11816325 (+)
G127509 NA non-coding upstream 1223633 10442993 ~ 10444937 (+)
G127278 NA non-coding upstream 2290981 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 2585689 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 3028747 8638596 ~ 8639823 (+)
G127096 NA non-coding upstream 3373697 8294518 ~ 8294873 (+)
G127924 NA non-coding downstream 419082 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 865022 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 930980 12606039 ~ 12655172 (+)
G128107 ola1,LOC107660044 non-coding downstream 963926 12638985 ~ 12676174 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding downstream 1162592 12837651 ~ 12841008 (+)
AMCG00000949 NA other upstream 1514383 10100283 ~ 10154187 (+)
G127134 NA other upstream 3048375 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 6202589 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 9854413 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 9969997 1668845 ~ 1698573 (+)
AMCG00001002 myo3b other downstream 324605 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 613891 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 3475216 15150275 ~ 15184392 (+)
G128823 NA other downstream 3734053 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 3785473 15460532 ~ 15463853 (+)

Expression


Co-expression Network