AMCG00001000 (mettl5)


Basic Information

Item Value
gene id AMCG00001000
gene name mettl5
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11844137 ~ 11847160 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001000
CCCGGACCGCTTTTGCTGTGGCTCCGTGTTTACCCTCCGTGCTTCCGCCTTGGGTTGCAGCATGGAAACTATACAGCACTTTACATGTGTTTCACTGCACAATCgataaaacagcacaaaataacAACGTGACTACGGGTAtttgaaagagggagagaaatatacaatattttttgcttttacgTGACATTTGTCCTGATTAAGGAAGGTGAACAGACGAAGGAGGACGTCACATGGCAGGGTCCTAATTGCAATCTAATCCATATAAAAGAATTGCAGACATGAAACTGAAGGAGCTGGAAAGCTGCCTACAGCAGGTCGATGTGTTTGAAGACCCAAAGCTGCTTCTCGAGCAGTACCCCACCAGCCCCCACATCGCCGCCCGTATGCTTTATACCATCCACAACTCCTTCGATGACATTGAAAGCAGGTTGGTGGCAGATCTGGGATGTGGCTGTGGCGTTCTCAGCGTCGGCGCTGCCATGCTAGATGCAGGGCTGTGCGTGGGCTTTGACATTGATGAAGATGCGTTGGAGATATTTAGCAGGAATGCAGAAGAGTTCGAGCTCACAAACATAGACATGGTTCAGTGTGACGTCTGCTCGTTGGAGTCCGACAGATTCTACAATAAGTTTGATACAGTCATCATGAATCCACCATTTGGAACCAAACACAATAAAGGTATGGACATGCACTTTCTCAAAACAGCATTAAACATGGCAAGCAATGCGGTGTATTCCCTTCATAAGACATCAACACGAGAAcacatcCAAAAGAAAGCGAGTGATTGGAAAGTCAAAATGGAAGTATTAGCAGAGCTTAGATACGACTTGCCAGCAACATACAAGTTCCATAAAAAGAAATCGGTTGACATTGAGGTGGATTTCATACGCTTCTCCACGACG

Function

symbol description
mettl5 Predicted to enable S-adenosyl-L-methionine binding activity and rRNA (adenine-N6-)-methyltransferase activity. Predicted to be involved in positive regulation of translation; rRNA methylation; and stem cell differentiation. Predicted to act upstream of or within methylation. Predicted to be located in nucleus; postsynapse; and presynapse. Used to study autosomal recessive intellectual developmental disorder-72. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder-72. Orthologous to human METTL5 (methyltransferase 5, N6-adenosine).

NR:

description
PREDICTED: methyltransferase-like protein 5

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K24418 METTL5; rRNA N6-adenosine-methyltransferase METTL5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001000 True 905 mRNA 0.46 9 11844137 11847160

Neighbor

gene id symbol gene type direction distance location
AMCG00000998 NA coding downstream 29087 11811434 ~ 11815050 (-)
AMCG00000999 NA coding downstream 41684 11795399 ~ 11802453 (-)
AMCG00000991 atp5b,LOC102199207 coding downstream 97956 11741361 ~ 11746181 (-)
AMCG00000992 lrp2 coding downstream 110497 11675086 ~ 11733640 (-)
AMCG00000987 abcb11b,abcb11,LOC105911976,LOC107692229,LOC107602798,LOC108438644,LOC108270741 coding downstream 189131 11625091 ~ 11655006 (-)
AMCG00001015 tlk1 coding upstream 247306 12094466 ~ 12110600 (-)
AMCG00001014 NA coding upstream 281405 12128565 ~ 12141472 (-)
AMCG00001021 slc25a12,LOC102297988 coding upstream 346039 12193199 ~ 12210908 (-)
AMCG00001020 dlx2,LOC106581766,LOC102799862 coding upstream 439007 12286167 ~ 12287617 (-)
AMCG00001024 NA coding upstream 553350 12400510 ~ 12415391 (-)
G127747 NA non-coding downstream 226032 11615457 ~ 11618105 (-)
G127743 NA non-coding downstream 232525 11610243 ~ 11611612 (-)
G127742 NA non-coding downstream 234507 11609271 ~ 11609630 (-)
G127740 NA non-coding downstream 237961 11605804 ~ 11606176 (-)
G127718 NA non-coding downstream 436277 11396710 ~ 11407860 (-)
G127899 NA non-coding upstream 61826 11908986 ~ 11911822 (-)
G127976 NA non-coding upstream 307348 12154508 ~ 12158483 (-)
G128045 NA non-coding upstream 511399 12358559 ~ 12387584 (-)
G128070 NA non-coding upstream 646018 12493178 ~ 12495215 (-)
G128155 NA non-coding upstream 917752 12764912 ~ 12810017 (-)
AMCG00000960 NA other downstream 1143773 10696856 ~ 10700364 (-)
G127443 NA other downstream 1565926 10274687 ~ 10278211 (-)
G127292 NA other downstream 2424812 9418996 ~ 9419325 (-)
G127039 LOC100136012,LOC107575789 other downstream 4198415 7629915 ~ 7645722 (-)
AMCG00000888 LOC102209482 other downstream 5110320 6689568 ~ 6733817 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other upstream 850017 12697177 ~ 12703910 (-)
AMCG00001039 NA other upstream 878534 12725694 ~ 12732601 (-)
G128160 wipf1 other upstream 885024 12732184 ~ 12751516 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other upstream 1509823 13356983 ~ 13359770 (-)
AMCG00001068 LOC107576050 other upstream 1920381 13767541 ~ 13773878 (-)

Expression


Co-expression Network