AMCG00001001


Basic Information

Item Value
gene id AMCG00001001
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11815603 ~ 11816325 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001001
ATGAAGACTCTTGTAGTGCTGGACTTCGACCACACGGTGGTGGACGACAACAGTGACACCTGGGTGATCAGGTGCACCCCGGAGCAGCGCCTGCCGGACTGGCTCAGGAAGACCTGCCAGAAAGGGCGCTGGACGGAGTACATGGGCAGAGTGATGGCTTACATCGGCGACCAGGCCATCGCAGAGGACGCGATCAGACATGTGATGGAAACGGTGCCTTTCACAGACGGCATGTTAGAGCTTTTGAACTTCATCGATCGGAACAAAGACAAGATGGACTGTATCATCATTTCGGACTCGAACAGCGTCTTCATTGACTGGATCTTGCGGGCGGGCGGTGTCCGCGGGGCTGTGGACCAGGTGTTCACCAACCCGGCCCAGTTCGACGAGCGAGGCTACCTGACAGTGCAGTGCTGTCACTCCCACGACTGTGCTCAGTGTCCGCTCAACCTCTGCAAGAGAAAGGTCCTGCGGGACTTTCTGGGGAGCCAGTCGCACAACGGCGTGGAGTATCGGACGACGTTTTACATCGGCGATGGAGGCAATGACCGCTGCCCCGCCGAGAGCCTGGCCGAGGGAGACATCGTCATGCCACGGAAGGGCTACACGCTGGAGAAGCTGCTGTGCCGTGCGGGCCCAGCCAGCGCGTCCCTGAAACCCCGGGTCGTGGTGTGGTCGAGTGGATGTGACATCCTCTCTGAGATCATTTCGTCTGTGAATTGA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K13248 PHOSPHO2; pyridoxal phosphate phosphatase PHOSPHO2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001001 True 723 mRNA 0.59 1 11815603 11816325

Neighbor

gene id symbol gene type direction distance location
AMCG00000993 ppig,LOC106586208 coding upstream 4314 11802855 ~ 11811289 (+)
AMCG00000997 NA coding upstream 20153 11786542 ~ 11795450 (+)
AMCG00000996 LOC106581781,LOC105022468 coding upstream 30861 11746159 ~ 11784742 (+)
AMCG00000990 NA coding upstream 74619 11737469 ~ 11740984 (+)
AMCG00000983 NA coding upstream 140544 11668570 ~ 11675059 (+)
AMCG00000995 NA coding downstream 10051 11826376 ~ 11839893 (+)
AMCG00000994 NA coding downstream 24165 11840490 ~ 11847160 (+)
AMCG00001004 ubr3 coding downstream 32052 11848377 ~ 11872129 (+)
AMCG00001006 NA coding downstream 66319 11882644 ~ 11909312 (+)
AMCG00001005 myo3b coding downstream 109000 11925325 ~ 11933099 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding upstream 72853 11671768 ~ 11742750 (+)
G127509 NA non-coding upstream 1370666 10442993 ~ 10444937 (+)
G127278 NA non-coding upstream 2438014 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 2732722 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 3175780 8638596 ~ 8639823 (+)
G127924 NA non-coding downstream 277816 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 723756 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 789714 12606039 ~ 12655172 (+)
G128107 ola1,LOC107660044 non-coding downstream 822660 12638985 ~ 12676174 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding downstream 1021326 12837651 ~ 12841008 (+)
AMCG00000949 NA other upstream 1661416 10100283 ~ 10154187 (+)
G127134 NA other upstream 3195408 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 6349622 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 10001446 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 10117030 1668845 ~ 1698573 (+)
AMCG00001002 myo3b other downstream 183339 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 472625 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 3333950 15150275 ~ 15184392 (+)
G128823 NA other downstream 3592787 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 3644207 15460532 ~ 15463853 (+)

Expression


Co-expression Network