AMCG00001006


Basic Information

Item Value
gene id AMCG00001006
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11882644 ~ 11909312 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001006
AATCCCCAGATGCAGATGTTGCTATGGACCTGGGCTCATCGGAGCAGCAGGTGTCTGAGGTGCTGTATGACTGTGTCATTTGTGGACAGAGTGGCCCCTCCACAGATGACAGGCCCACTGGCTTAGTGGTTCTGCTTCAAGCATCTTCAGGGCATCGTTGCAAAAGCACTGAGCTGAAGAAGCTACCAACCAGCGACGAGGAGCGCATTTACCCCGAAGATACATGTGGAGCAGCCAATGATGTCAGACTGGCAATGTTACAGCGCTTCTTCAAGGACAGTTCATGTCTGCAGTCAGTGTCTATTGGATGGGAAGGAGGCGTGTACGTGCAAACATGTGGCCATACTCTCCACATAGACTGCCACAAGTCTTACATGGAGTCATTGCGAAACGACCAGGTGCTGCAGGGCTTCTCGGTGGACAAGGGGGAGTTCACCTGCCCTCTCTGCAGACAGTTTGCCAACAGCGTCCTGCCCTGCCGCCCAGGCCGAGGTGTAGAGTTGGGCCCCTGGCATGCTCACAGCAACAAGAACATTGTCACCCTTGTGAAAGAAGTCGAAGAGTTACAGGAACACCTGGGGACATTCCCAtcagAATCCAATCTGAGTAAAGAGATGGAGTCTTTGATAAAGGACATAAAGAACACAACCCAGAAGAAATACATGGACTACAGCAAGACCCCAGGATCTCCAGataatgacttcctgttcatgtATTCTGTAGCTAGGACTaacctggagctggagctggtgcaTCGTGGGGGAGATTTGTGCTGCGGTGGAGCCAGTGCTGCTGCCAAGCGCTCCTGCCTCAATCAACTGTTTCATGTGATGGCAATGCACATGCGCCTTTACAGCATTGACTCGGCCTACAACCCCTGGACCAAGCTGACGCAGCTGACGCATAAGGATTTAAAAATCTGTGATGATGACAGGCCAGAGGTCCCCATGCTTTTCAGAGATGTCCCTTCTTTACTGATCATTTTTGTGTTAACGATGCCACAGCCTCTGCGAAAAGaACACTTTACCTGCATTGTGAAGATCTTGTACACGTTACAGTACGTTCACGCCATCACAGTGCTTTCGGTCAAGTTCACTCCCGAGGAGAGATTAGCTTGGAAGACCTCAGGAGCTCTTAAGAAGaatacCTGCAATGCAGAAAAGTGTAGCGAGACATTGTTGAGCCATGTCATAAGCGAGTTGTGTAAAGGAAAGAGCTTTTATGAAGTGGCCAATGATGAACTATCAATGCTAACTTCCAGTATCTGGTCCCCTCAGTCGATCGAATATGCCCTTCAGCAGTTTTGCCTCCCTTTCCTCCGCATCACCAGCCTTCTGCAACACCACCTGTATGGAGACGACTTACCGAGTTGTCTGAGAGAAGAGGAATTTTCTGTGCTGGCAAGCTGTCTAGGGCTTCTTCCATCTACTTTCCAGCCATCAATCCAGTCCAGCAGTGCCTCCTGTCTTGAGTGGTCAGTCTCCGCTTTTGACTTGATATCTCAGTGGTGCTCAGAAGTGACGGCATTTGCAGACgcacagaaaaaacatgctGTGACTTTGCTTGTTCAAGATCCTCATTGGTCTGCACCACATCTTCTGCACTTACCAGAGAATTACAACACCATCTTCCAGTACTATCACAGGAAGGCCTGTACGGTCTGTAATAAGGTGCCTAAGGATCCTGCACTGTGTCTCGTTTGTGGCACGTTTGTGTGCCTGAAGGGACTTTGCTGCAAGCAACAGAGTTACTGTGAATGTGTCCTGCATTCGCAGCACTGTGGGGCAGCAACAGGAATATTCCTGCTGATCAACGCCtccgtcatcatcatcatcagaggCCATCGATTCTGCCTGTGGGGCTCGGTCTACCTGGACGCCCatggagaggaggacagagacCTCCGCCGTGGCAAGCCGCTCTACCTGTGTGAAGAAAGGTACCGGGTGTTGGAGCAGCAGTGGGTGTCTCACACCTTCGACCACATCAACAAGCGCTGGGGCCCCCATTACAATGGATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001006 True 2021 mRNA 0.51 15 11882644 11909312

Neighbor

gene id symbol gene type direction distance location
AMCG00001004 ubr3 coding upstream 10515 11848377 ~ 11872129 (+)
AMCG00000994 NA coding upstream 35484 11840490 ~ 11847160 (+)
AMCG00000995 NA coding upstream 42751 11826376 ~ 11839893 (+)
AMCG00001001 NA coding upstream 66319 11815603 ~ 11816325 (+)
AMCG00000993 ppig,LOC106586208 coding upstream 71355 11802855 ~ 11811289 (+)
AMCG00001005 myo3b coding downstream 16013 11925325 ~ 11933099 (+)
AMCG00001007 myo3b coding downstream 42063 11951375 ~ 11962697 (+)
AMCG00001009 sp5 coding downstream 105402 12014714 ~ 12017222 (+)
AMCG00001008 NA coding downstream 110493 12019805 ~ 12034616 (+)
AMCG00001003 gad1 coding downstream 131013 12040325 ~ 12062111 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding upstream 139894 11671768 ~ 11742750 (+)
G127509 NA non-coding upstream 1437707 10442993 ~ 10444937 (+)
G127278 NA non-coding upstream 2505055 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 2799763 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 3242821 8638596 ~ 8639823 (+)
G127924 NA non-coding downstream 184829 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 630769 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 696727 12606039 ~ 12655172 (+)
G128107 ola1,LOC107660044 non-coding downstream 729673 12638985 ~ 12676174 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding downstream 928339 12837651 ~ 12841008 (+)
AMCG00000949 NA other upstream 1728457 10100283 ~ 10154187 (+)
G127134 NA other upstream 3262449 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 6416663 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 10068487 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 10184071 1668845 ~ 1698573 (+)
AMCG00001002 myo3b other downstream 90352 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 379638 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 3240963 15150275 ~ 15184392 (+)
G128823 NA other downstream 3499800 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 3551220 15460532 ~ 15463853 (+)

Expression


Co-expression Network