AMCG00001015 (tlk1)


Basic Information

Item Value
gene id AMCG00001015
gene name tlk1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12094466 ~ 12110600 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001015
AGGTGCAATGGATGAACTACACAGCCTTGATCCCAGGCGACAAGAGCTGTTGGAAGCCCGGTTCACTGGTGGTGTGAGTGGCAGCACGGGGGGCAGCACGGGCAGCGGCAGTGCAGGAGCTAAAgCCTTGACAAATAATGAATGTTCAAACCACAGTTTTGGAAGTCTTGGTTCCTTAAGTGATAAGGAATCAGAGGGCTCTGATGTGAAGAGAGGCAGCTCCCCTGCGTATTCAACCCCTGAAAAAAAGCTCTCTGAATCCtcgagagggagaaagaggaaaGCAGAAAATCAGACTGAGAGCAACCAAGGTGACAAATTATATAGATGTACATTAAAGTTCCAGGGAGGGAACGGGTCCAGTCCGGTGAGAGGAGTCCCTCCGGTTATCCGCTCGCCTCAGAACTCACATTCACATTCCACCCCCGGCTCCACTATTAGACAAAATAGCCCATCTCCAACTAGTCTGTCTTTTGGGGACCATGTTGTAGTACATCCAAAACAGTTGTCCATTAAATGTGTTCAGACTGATCTTACGGTGCTCAAGTTAGCTGCCCTTGAAAGTAATAAGAATCTGGACCTAGAGAAAAAAGAAGGGAGAATAGATGATTTGCTTCGGGCAAACTGTGATCTCAGGAGACAAATAGATGAACAGCAGAAATTACTTGAAAAGTACAAGGAACgcttaaataaatgcatcaccATGAGCAAGAAGTTACTTATTGAAAAGaGTACACAGGAGAAGCAGGCGTGCCGGGAGAAAAGCATGCAGGACAGATTGCGGCTTGGCCATTTCACCACAGTTCGGCATGGGGCCTCCTTCACAGAACAGTGGACAGATGGCTTTGCATTTCAGAATCTTGTAAAGCAGCAAGAATGGATAAATCAGCAGAGAGAAGAAATTGAAAGGCAGAGAAAACTGTTGGCCAAGAGGAAACCTCCGACAACCAACAACTCTCAGACCCCGACCATGAACTCTGAGCCAAAGCAACGGAAAACCAAGGCAGTCAATGGAGCCGACAATGATCCATTTCTCAAACCTAGCCTACCTCAGCTGTTGACTGTAGCTGAGTACCATGAACAGGAAGAAATATTCAAGCTTCGACTAGGGCATCTCAAAAAGGAAGAAGCTGAAATCCAAGCTGAACTTGAACGTCTGGAAAGAGTACGGAATCTGCACATACGGGAACTGAAGagaataaataatgaagatAACTCGCAgtTTAAAGATCATCCAACTTTGAACGAGAGATATCTATTATTGCATCTTCTGGGAAGAGGAGGCTTTAGTGAAGTATATAAgGCCTTTGATTTGTTTGAGCAACGGTATGCTGCAGTGAAGATCCACCAGctcaataaaaactggagagaagagaagaaagaaaactacCACAAGCATGCCTGTCGAGAATATAGAATACACAAGGAGTTGGATCACCCCAGGATAGTGAAATTGTATGACTATTTCTCGCTCGATACAGACACGTTTTGTACAGTGTTAGAATACTGTGAAGGCAATGACTTGGACTTCTACTTGAAACAGCATAAGCTAATGTCTGAAAAAGAAGCCAGGTCAATTGTCATGCAGATTGTGAATGCACTACGATATCTGAATGAAATCAAGCCACCTATCATACACTACGATCTCAAGCCCGGGAACATCCTCCTTGTTGATGGGACTGCTTGTGGCGAGATCAAAATCACAGACTTTGGTTTGTCCAAAATCATGGACGATGACAATTATGGTGTAGATGGAATGGATTTGACATCACAGGGAGCAGGCACCTattgGTACTTGCCTCCTGAATGTTTTGTAGTTGGCAAAGAACCCCCCAAGATTTCCAACAAGGTTGATGTCTGGTCTGTCGGAgtcatttttttccagtgtcTTTATGGAAGAAAGccATTCGGCCACAATCAGTCCCAGCAGGATATCTTGCAGGAGAACACAATACTAAAAGCTACAGAAGTTCAGTTTCCTGTCAAGCCAGTTGTTAGTAATGAAGCAAAGGCCTTTATAAGACGCTGCCTGGCATACCGAAAGGAGGACCGGTTCGACGTTCATCAGCTGGCCAGTGATTCCTACCTGCTTCCTCACATGAGGAGGTCAAATTCTTCAGGGAATCTGCACATGGGGGGCTCGGTCCCTCCCGGGCCTCCGTCTTCGAGTATCATTTCCTACTGAGGATCTGTGCCGACTGAAGTCCGGCGTGGTGTTTTGAGCAGCTTCCTCCTACAGGACCTGGAAAGTGTTAAAGCAAGCATCACCTGTGCGTGTATGACCCGTTTGGGCCCGTGTCAGCTGCTTTGTGATTGGAGAGGAACGGCACCGCACTGGCTCTCCGCTTGGGCTGTACTGACATAGAGTTAAGGGCCTTAGCAAGGTAATGAATTATAGAGCACTGCGACAGAGTAGCCTGAAACGGGACTGGTAACCGAGTACTGTTACTGGTTGGCTGAATAGTGTCCGATCTGGCACAAACACTTGACACAGGAGGCAAAAGGGAGAAATTGCAGCctgctgttttgatttaatgaaaTTTGTGCCTGCCTGGACATGAATAATAGAACTACTATACCTGTATTTAAAGAGCTGTTGGTCTTTTTAAATTCTGATCctgtagtgtttgttttaacatcTCAGCAGTTGCATTCCTGTTGGTTTCTGTAAAGCGTTTGCTTTAAATTTTCCTTCTCACCCTTTTTGTTAAACGACCATGGGAATTTTCTGTTACAATGTGAGTGTGTGGCTACAGCTGGCATTATTGATATCCAGGCAGGAGCATGTTTGCAGAATGCACAGAAAGTAACCAAATGTAGACAAACTGCAATGTATAGTATCCTATGCaggatgatttaaaaaatcccTCTTagaaaaattgtatatttattgtacagATGTCAATTTCAGTTATTCTTAAATTTCAGCAGTTTAATTTCTGTacaaagtgttatttttattttttttttcttactggaaattgtcatttttatgtCTCCTGGAGCATTTTCATTTGCTGCTATTGATGTTGCTTTTACTTTTTGATAAGGCTGTATGATCTACTTGAGGTACAAGTTGTACAGttcagttaaaagaaaaaaataatagttacAAGAAAATCAAGGCATGTAATAACTAATTTGTTAGGACACAATTCTTAAAAAGTAAGAGGCCATCGTGCTTTTTTTGGCAATTAATAGGCTGTTATGGTGTCTGTTCTAGGTGGTCGTCCCTATAGAGGCGGCTCTGTGCTGCCTGAGGGGATGATCTTGCTGTAGATTAAAGGGTGTCAGGCACCTCCTCTTCAGACTGACACTAATAAggtttaatattttgttcttaatgTGCTACAAAGCCATTGCTGTGAAATTACAAGAACTGCCTTGTCAGTACAATCCAGTAACTCTGTACATGGTCTGTCTGTTCTGTACATTACCCTGGTCAATGTTATGTCCACGATACTGAATGAATGCTTGTTTGTAATTTCTGCAAAGGAAAACCTGTAACTACAGGTTTCACCTCAATGTTCAGAAGTTAAGCTTTTGCTAATGTTTTTGATGTTgcaggccttttttttttccNNNNNNNNNNttttttttttt

Function

symbol description
tlk1 Enables ATP binding activity and protein serine/threonine kinase activity. Involved in several processes, including intracellular protein transport; protein phosphorylation; and regulation of chromatin assembly or disassembly. Located in nucleoplasm.

NR:

description
serine/threonine-protein kinase tousled-like 1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08864 TLK; tousled-like kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001015 True 3603 mRNA 0.43 20 12094466 12110600

Neighbor

gene id symbol gene type direction distance location
AMCG00001000 mettl5 coding downstream 247306 11844137 ~ 11847160 (-)
AMCG00000998 NA coding downstream 279416 11811434 ~ 11815050 (-)
AMCG00000999 NA coding downstream 292013 11795399 ~ 11802453 (-)
AMCG00000991 atp5b,LOC102199207 coding downstream 348285 11741361 ~ 11746181 (-)
AMCG00000992 lrp2 coding downstream 360826 11675086 ~ 11733640 (-)
AMCG00001014 NA coding upstream 17965 12128565 ~ 12141472 (-)
AMCG00001021 slc25a12,LOC102297988 coding upstream 82599 12193199 ~ 12210908 (-)
AMCG00001020 dlx2,LOC106581766,LOC102799862 coding upstream 175567 12286167 ~ 12287617 (-)
AMCG00001024 NA coding upstream 289910 12400510 ~ 12415391 (-)
AMCG00001035 LOC106600091,LOC108430841 coding upstream 425218 12535818 ~ 12544417 (-)
G127899 NA non-coding downstream 182644 11908986 ~ 11911822 (-)
G127747 NA non-coding downstream 476361 11615457 ~ 11618105 (-)
G127743 NA non-coding downstream 482854 11610243 ~ 11611612 (-)
G127742 NA non-coding downstream 484836 11609271 ~ 11609630 (-)
G127740 NA non-coding downstream 488290 11605804 ~ 11606176 (-)
G127976 NA non-coding upstream 43908 12154508 ~ 12158483 (-)
G128045 NA non-coding upstream 247959 12358559 ~ 12387584 (-)
G128070 NA non-coding upstream 382578 12493178 ~ 12495215 (-)
G128155 NA non-coding upstream 654312 12764912 ~ 12810017 (-)
G128191 NA non-coding upstream 888982 12999582 ~ 12999876 (-)
AMCG00000960 NA other downstream 1394102 10696856 ~ 10700364 (-)
G127443 NA other downstream 1816255 10274687 ~ 10278211 (-)
G127292 NA other downstream 2675141 9418996 ~ 9419325 (-)
G127039 LOC100136012,LOC107575789 other downstream 4448744 7629915 ~ 7645722 (-)
AMCG00000888 LOC102209482 other downstream 5360649 6689568 ~ 6733817 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other upstream 586577 12697177 ~ 12703910 (-)
AMCG00001039 NA other upstream 615094 12725694 ~ 12732601 (-)
G128160 wipf1 other upstream 621584 12732184 ~ 12751516 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other upstream 1246383 13356983 ~ 13359770 (-)
AMCG00001068 LOC107576050 other upstream 1656941 13767541 ~ 13773878 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025252 tlk2 coding NC_007114.7 CM002887.2 19685873 ~ 19717934 (+)